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2022-06-01Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2022-06-01gnu: vim: Update to 8.2.5048.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.2.5048. [arguments]: Patch another instance of '/bin/sh'.
2022-06-01gnu: pigx-rnaseq: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0. [arguments]: Remove phase 'patch-knitr.
2022-06-01gnu: pigx-rnaseq: Update to 0.0.21.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.21.
2022-06-01gnu: pigx-rnaseq: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase 'patch-knitr.
2022-05-31gnu: python-pyopenssl: Downgrade to 21.0.0.Efraim Flashner
This is a follow-up to 048e05b7ef568dc5e29df774baaf69f7cc5ddaaa. * gnu/packages/python-crypto.scm (python-pyopenssl): Downgrade to 21.0.0. [source]: Add patch used by python2-pyopenssl. [properties]: Remove field. (python2-pyopenssl): Inherit from python-pyopenssl regularly.
2022-05-30gnu: python2-cryptography: Update to 3.3.2.Efraim Flashner
* gnu/packages/python-crypto.scm (python2-cryptography-vectors, python2-cryptography): Update to 3.3.2.
2022-05-30gnu: python-cryptography: Downgrade to 3.4.8.Efraim Flashner
Skip dealing with the rust version for now. * gnu/packages/python-crypto.scm (python-cryptography): Rename to python-cryptography-next. Replace with python-cryptography@3.4.8. (python-cryptography-vectors): Rename to python-cryptography-vectors-next. Replace with python-cryptography-vectors@3.4.8.
2022-05-29gnu: gnome-commander: Update to 1.14.2.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (gnome-commander): Update to 1.14.2.
2022-05-29gnu: angband: Update to 4.2.4.Tobias Geerinckx-Rice
* gnu/packages/games.scm (angband): Update to 4.2.4. [arguments]: Don't explicitly return #t from phases.
2022-05-29gnu: freeipmi: Update to 1.6.9.Tobias Geerinckx-Rice
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.9.
2022-05-29gnu: corefreq: Update to 1.90.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (corefreq): Update to 1.90.1.
2022-05-29gnu: services: Update setuid service description.Tobias Geerinckx-Rice
* gnu/services.scm (setuid-program-service-type)[description]: Remove ‘root’, add ‘setgid’.
2022-05-29gnu: libfprint: Update to 1.94.4.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (libfprint): Update to 1.94.4.
2022-05-29gnu: fprintd: Update to 1.94.2.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (fprintd): Update to 1.94.2.
2022-05-29gnu: fprintd: Remove input labels.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Remove input labels.
2022-05-29gnu: fprintd: Fix build.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Add python.
2022-05-29gnu: beancount: Update to 2.3.5.Tobias Geerinckx-Rice
* gnu/packages/finance.scm (beancount): Update to 2.3.5.
2022-05-29gnu: caf: Update to 0.18.6.Tobias Geerinckx-Rice
* gnu/packages/cpp.scm (caf): Update to 0.18.6.
2022-05-29gnu: quazip: Update to 1.3.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (quazip): Update to 1.3.
2022-05-29gnu: foomatic-filters: Use project home page.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (foomatic-filters)[home-page]: Point upstream.
2022-06-01gnu: Add sylamer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sylamer): New variable.
2022-05-31gnu: linux-libre 5.10: Update to 5.10.119.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.119. (linux-libre-5.10-pristine-source): Update hash.
2022-05-31gnu: linux-libre 5.15: Update to 5.15.44.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.44. (linux-libre-5.15-pristine-source): Update hash.
2022-05-31gnu: linux-libre: Update to 5.17.12.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.12. (linux-libre-5.17-pristine-source): Update hash.
2022-05-31gnu: Add r-gsalib.Ricardo Wurmus
* gnu/packages/cran.scm (r-gsalib): New variable.
2022-05-31gnu: Add glibc-locales-2.32.Ricardo Wurmus
* gnu/packages/base.scm (glibc-locales-2.32): New variable.
2022-05-31gnu: Add glibc-locales-2.31.Ricardo Wurmus
* gnu/packages/base.scm (glibc-locales-2.31): New variable.
2022-05-31gnu: Add glibc-locales-2.30.Ricardo Wurmus
* gnu/packages/base.scm (glibc-locales-2.30): New variable.
2022-05-31gnu: Add glibc-2.32.Ricardo Wurmus
* gnu/packages/base.scm (glibc-2.32): New variable.
2022-05-31gnu: Remove python2-biopython.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python2-biopython): Delete variable.
2022-05-31gnu: Remove pplacer-scripts.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (pplacer-scripts): Delete variable.
2022-05-31gnu: Remove pplacer.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (pplacer): Delete variable.
2022-05-31gnu: Remove python2-pytest-cov.Maxim Cournoyer
* gnu/packages/check.scm (python2-pytest-cov): Delete variable.
2022-05-31gnu: Remove python2-called-python.Maxim Cournoyer
* gnu/packages/python.scm (python2-called-python): Delete variable.
2022-05-31gnu: Remove python-prompt-toolkit-2.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-prompt-toolkit-2): Delete variable. (python-prompt-toolkit)[properties]: Delete field. (python-jupyter-console): Replace python-prompt-toolkit-2 with python-prompt-toolkit.
2022-05-31gnu: Remove python2-setuptools.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-setuptools): Delete variable. (python-setuptools)[properties]: Delete field. * gnu/packages/syncthing.scm (syncthing-gtk): Delete commented native input. * guix/lint.scm (check-inputs-should-not-be-an-input-at-all): Remove obsolete entries.
2022-05-31gnu: Remove python2-checkm-genome.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python2-checkm-genome): Delete variable.
2022-05-31gnu: qtwebengine: Re-style inputs.Maxim Cournoyer
* gnu/packages/qt.scm (qtwebengine)[phases]: Delete trailing #t. {substitute-source}: Use search-input-file. [inputs, native-inputs]: Use new style.
2022-05-31gnu: Remove python2-backports-csv.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-backports-csv): Delete variable.
2022-05-31gnu: python2-six: Disable tests.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-six)[native-inputs]: Clear. [phases]: Delete check phase.
2022-05-31gnu: Remove python2-fonttools.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-fonttools): Delete variable. (python-fonttools)[properties]: Delete field.
2022-05-31gnu: Remove python2-py.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-py): Delete variable.
2022-05-31gnu: Remove python2-pyparsing.Maxim Cournoyer
* gnu/packages/python-build.scm (python2-pyparsing): Delete variable. (python-pyparsing)[properties]: Delete field.
2022-05-31gnu: Remove python2-setuptools-scm.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-setuptools-scm): Delete variable. (python-lfdfiles)[properties]: Delete field.
2022-05-31gnu: Remove python2-six-bootstrap.Maxim Cournoyer
* gnu/packages/python-build.scm (python2-six-bootstrap): Delete variable.
2022-05-31gnu: Remove python2-pyxdg.Maxim Cournoyer
* gnu/packages/freedesktop.scm (python2-pyxdg): Delete variable.
2022-05-31gnu: Remove python2-wcwidth.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-wcwidth): Delete variable.
2022-05-31gnu: openbox: Patch for Python 3.Maxim Cournoyer
* gnu/packages/patches/openbox-python3.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/openbox.scm (openbox)[source]: Apply it. [arguments]: New field. [propagated-inputs]: Replace python2-pyxdg with python-pyxdg. [native-inputs]: Replace python-2 with python-wrapper. Add autoconf, automake, gettext-minimal and libtool.
2022-05-31gnu: Remove python2-pyyaml.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-pyyaml): Delete variable. (python-jsonschema)[properties]: Delete field.
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