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2022-01-10gnu: libpcap: Update to 2.62....* gnu/packages/linux.scm (libpcap): Update to 2.62. [phases]{configure}: Delete phase, and move LDFLAGS to... [make-flags]: ... here. Define arguments via G-expressions. Maxim Cournoyer
2022-01-10gnu: cmake-bootstrap: Update to 3.21.4....* gnu/packages/cmake.scm (cmake-bootstrap): Update to 3.21.4. Maxim Cournoyer
2022-01-10gnu: eudev: Update to 3.2.11....* gnu/packages/linux.scm (eudev): Update to 3.2.11. [phases]{make-source-writable}: Remove phase, no longer needed. {patch-bindir-in-btrfs-rules}: Likewise, fixed upstream. Remove trailing #t. Maxim Cournoyer
2022-01-10gnu: util-linux: Update to 2.37.2....* gnu/packages/linux.scm (util-linux): Update to 2.37.2. Maxim Cournoyer
2022-01-10gnu: gnupg: Update to 2.2.32....* gnu/packages/gnupg.scm (gnupg): Update to 2.2.32. (gnupg-2.2.32): Delete variable. (qgpgme)[native-inputs]: Use the regular gnupg package. * gnu/packages/emacs-xyz.scm (emacs-pinentry): Likewise. Maxim Cournoyer
2022-01-10gnu: glibmm-2.64: Fix libsigc++ propagation....Fixes <https://issues.guix.gnu.org/52519>. The package was propagating two variants of libsigc++. * gnu/packages/glib.scm (glibmm-2.64)[propagated-inputs]: Replace existing libsigc++ package instead of prepending an extra one. Reported-by: Leo Famulari <leo@famulari.name> Maxim Cournoyer
2022-01-10gnu: glibmm: Remove trailing #t....* gnu/packages/glib.scm (glibmm): Remove trailing #t. Maxim Cournoyer
2022-01-10gnu: pciutils: Fix the conditional for the kmod input....Fixes <https://issues.guix.gnu.org/52411>. Thanks to Maxime Devos for suggesting the solution. * gnu/packages/pciutils.scm (pciutils): Delete trailing #t. [inputs]{kmod}: Use the hurd-target? procedure in the condition, which correctly handles the Nix system of %current-system and GNU triplet of %current-target-system. Maxim Cournoyer
2022-01-10gnu: help2man: Update to 1.48.5....* gnu/packages/man.scm (help2man): Update to 1.48.5. Maxim Cournoyer
2022-01-10gnu: python-nose: Fix build....This unmaintained package doesn't build anymore on Python 3.9.9. * gnu/packages/check.scm (python-nose)[phases]{invoke-2to3}: New phase. [properties]: New field. (python2-nose): Strip python2 property. [phases]{invoke-2to3}: Delete phase. Maxim Cournoyer
2022-01-10gnu: glib: Fix cross-compilation....Fixes <https://issues.guix.gnu.org/52574>. Reported by L p R n d n <guix@lprndn.info>. Thanks to Maxime Devos for the suggested fix. * gnu/packages/glib.scm (glib)[configure-flags]: Define as a G-expression. (glib-with-documentation)[configure-flags]: Likewise. Maxim Cournoyer
2022-01-10gnu: libproxy: Remove target condition from check phase....* gnu/packages/networking.scm (libproxy)[phases]{check}: Remove target condition. Maxim Cournoyer
2022-01-10gnu: libcap: Use #$output unconditionally....* gnu/packages/linux.scm (libcap)[phases]{configure}: Use #$output unconditionally. Maxim Cournoyer
2022-01-10gnu: heimdal: Unify phases, addressing TODO....* gnu/packages/kerberos.scm (heimdal)[phases]: Unconditionally use the %current-target-system branch. Maxim Cournoyer
2022-01-10gnu: cairo: Use bash-minimal unconditionally....* gnu/packages/gtk.scm (cairo)[inputs]: Use bash-minimal unconditionally. Maxim Cournoyer
2022-01-10gnu: llvm-12: Use quasiquote, addressing TODO....* gnu/packages/llvm.scm (llvm-12)[configure-flags]: Use quasiquote. Maxim Cournoyer
2022-01-10gnu: mozjs-60: Use quasiquote, addressing TODO....* gnu/packages/gnuzilla.scm (mozjs-60)[configure-flags]: Use quasiquote. Maxim Cournoyer
2022-01-10gnu: gobject-introspection: Unconditionally use flex and bison....* gnu/packages/glib.scm (gobject-introspection): Delete trailing #t. [native-inputs]: Unconditionally use flex and bison. Maxim Cournoyer
2022-01-10gnu: rust-bitflags-1: Absorb rust-bitflags-1.3....* gnu/packages/crates-io.scm (rust-bitflags-1.3): Delete variable, absorbed into... (rust-bitflags-1): ... this one. * gnu/packages/syndication.scm (newsboat)[cargo-inputs]: Adjust to use rust-bitflags-1. Maxim Cournoyer
2022-01-10gnu: binutils: Absorb binutils-next....* gnu/packages/base.scm (binutils)[configure-flags]: Set out-of-source? to #t. {--enable-64-bit-bfd, --enable-compressed-debug-sections=all, --enable-lto, --enable-separate-code, --enable-threads}: New flags. (binutils-next): Delete variable. (binutils-gold): Inherit from binutils. * gnu/packages/linux.scm (kexec-tools)[native-inputs]: Replace binutils-next with binutils. Maxim Cournoyer
2022-01-10gnu: isc-dhcp: Address TODOs....* gnu/packages/admin.scm (isc-dhcp): Remove trailing #t. [phases]{post-install}: Remove the 'native-inputs' argument. {post-configure}: Do not patch the libexec scripts. [inputs]{bash}: Remove conditional. Maxim Cournoyer
2022-01-10gnu: autoconf-2.69: Repatriate unpatch-shebangs phase from 2.71....* gnu/packages/autotools.scm (autoconf-2.71)[phases]{unpatch-shebangs}: Move to... * gnu/packages/autotools.scm (autoconf-2.69)[phases]: ... here. Maxim Cournoyer
2022-01-10gnu: avahi: Make all arguments unconditional....* gnu/packages/avahi.scm (avahi)[origin]: Fix indentation and remove trailing #t. [arguments]: Re-integrate conditional arguments. Maxim Cournoyer
2022-01-10gnu: python-3.9: Update to 3.9.9....* gnu/packages/python.scm (python-3.9): Update to 3.9.9. Maxim Cournoyer
2022-01-10gnu: Remove meson-0.59 workarounds....Mostly automated with the following command: $ grep --include='*.scm' '#:meson ,meson-0.59' -rl \ | xargs sed -z 's/#:meson[^\n]*\s*//' -i * gnu/packages/freedesktop.scm (malcontent) (accountsservice): Delete #:meson argument. * gnu/packages/games.scm (gnome-2048): Likewise. * gnu/packages/geo.scm (gnome-maps): Likewise. * gnu/packages/gnome.scm (gnome-photos, gnome-music) (gnome-initial-setup, gnome-user-share, gnome-characters) (gnome-disk-utility, gnome-font-viewer, evince, glade3) (gnome-mines, gnome-sudoku, gnome-settings-daemon, devhelp) (totem, eog, gvfs, simple-scan, epiphany, gnome-session, gedit) (network-manager-applet, gnome-control-center, gnome-shell, nautilus) (gnome-default-applications, gnome-weather, gnome-tweaks, cheese, gthumb) (gitg, polari, gnome-boxes, gtranslator): Likewise. * gnu/packages/gtk.scm: (gtkmm-3): Likewise. * gnu/packages/pdf.scm (zathura): Likewise. * gnu/packages/photo.scm (entangle): Likewise. * gnu/packages/video.scm (pitivi): Likewise. * gnu/packages/virtualization.scm (libvirt-glib): Likewise. Maxim Cournoyer
2022-01-10gnu: meson: Update to 0.60.2 and absorb meson-wrapped....* gnu/packages/build-tools.scm (meson): Update to 0.60.2, and integrate fixes made in 'meson-wrapped': [phases]{wrap}: Replace phase. [inputs]: Add python-wrapper. [propagated-inputs]: Delete field. [properties]: Likewise. (meson-wrapped): Delete variable. Maxim Cournoyer
2022-01-10gnu: python-flit-core: Update to 3.5.1....* gnu/packages/python-build.scm (python-flit-core): Update to 3.5.1. Maxim Cournoyer
2022-01-10gnu: python-tomli: Update to 2.0.0....* gnu/packages/python-build.scm (python-tomli): Update to 2.0.0. Maxim Cournoyer
2022-01-10gnu: python-pyparsing: Update to 3.0.6....* gnu/packages/python-build.scm (python-pyparsing): Update to 3.0.6. [properties]: Add a python2-variant property. (python2-pyparsing): Inherit from the 2.4.7 variant, and strip the python2-variant property. Maxim Cournoyer
2022-01-10gnu: python-wheel: Update to 0.37.0....* gnu/packages/python-build.scm (python-wheel): Update to 0.37.0. Maxim Cournoyer
2022-01-10gnu: python-packaging-bootstrap: Update to 21.3....* gnu/packages/python-build.scm (python-packaging-bootstrap): Update to 21.3. (python2-packaging-bootstrap): Peg version to 20.0. Maxim Cournoyer
2022-01-10gnu: mesa: Update to 21.3.2....* gnu/packages/gl.scm (mesa): Update to 21.3.2. [phases]{disable-failing-test}: Disable the anv_state_pool unstable tests. Maxim Cournoyer
2022-01-10gnu: libx11: Update to 1.7.3.1....This update eliminates multiple xkbcomp unresolved symbols warnings. * gnu/packages/xorg.scm (libx11): Update to 1.7.3.1. Fix indentation. [source]: Update origin's URI. Maxim Cournoyer
2022-01-10sitecustomize.py: Honor .pth files....Fixes <https://issues.guix.gnu.org/52269>. * gnu/packages/aux-files/python/sitecustomize.py: Use site.addsitedirs to add the site directories; this takes care of the .pth files. Make sure the added items still appear before Python's own 'site-packages' directory. Maxim Cournoyer
2022-01-10gnu: i2c-tools: Fix cross-compilation....* gnu/packages/linux.scm (i2c-tools)[arguments]: Use #$output to fix cross-compilation. Mathieu Othacehe
2022-01-10gnu: Add xfel....* gnu/packages/admin.scm (xfel): New variable. Danny Milosavljevic
2022-01-10gnu: julia-simd: Update to 3.4.0....* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.0. Efraim Flashner
2022-01-10gnu: Add julia-bioalignments....* gnu/packages/julia-xyz.scm (julia-bioalignments): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-intervaltrees....* gnu/packages/julia-xyz.scm (julia-intervaltrees): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-biosequences....* gnu/packages/julia-xyz.scm (julia-biosequences): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-biosymbols....* gnu/packages/julia-xyz.scm (julia-biosymbols): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-yaml....* gnu/packages/julia-xyz.scm (julia-yaml): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-stringencodings....* gnu/packages/julia-xyz.scm (julia-stringencodings): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-automa....* gnu/packages/julia-xyz.scm (julia-automa): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-scanbyte....* gnu/packages/julia-xyz.scm (julia-scanbyte): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-simd....* gnu/packages/julia-xyz.scm (julia-simd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-twiddle....* gnu/packages/julia-xyz.scm (julia-twiddle): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-indexablebitvectors....* gnu/packages/julia-xyz.scm (julia-indexablebitvectors): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: Add julia-biogenerics....* gnu/packages/julia-xyz.scm (julia-biogenerics): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun
2022-01-10gnu: julia-documenter: Adjust style....* gnu/packages/julia-xyz.scm (julia-documenter)[propagated-inputs] Remove labels. [inputs, native-inputs]: Remove labels. [arguments]: Remove unnecessary return '#t'. Use search-input-file to find pip. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> zimoun