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2019-09-05gnu: texlive-union: Fix font map generation.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-union)[arguments]: Exclude sed and coreutils from union; add sed to the PATH; run updmap-sys twice; delete ls-R to avoid lookup failures.
2019-09-05gnu: texlive-latex-base: Ensure that extra sources are installed.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-base): Use simple-texlive-package to install additional files.
2019-09-05gnu: Add texlive-booktabs.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-booktabs): New variable.
2019-09-05gnu: Add texlive-siunitx.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-siunitx): New variable.
2019-09-05gnu: Add texlive-standalone.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-standalone): New variable.
2019-09-05gnu: texlive-latex-xkeyval: Fix build.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-xkeyval)[arguments]: Add various custom build phases to fix the build. [native-inputs]: Add texlive-latex-base, texlive-cm, texlive-lm, texlive-url, texlive-graphics-def, texlive-xcolor, texlive-latex-footmisc, texlive-latex-listings, texlive-iftex, texlive-pstricks, texlive-pst-text, texlive-tools, and texlive-latex-pgf.
2019-09-05gnu: Add texlive-tools.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-tools): New variable.
2019-09-05gnu: Add texlive-iftex.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-iftex): New variable.
2019-09-05gnu: Add texlive-pst-text.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-pst-text): New variable.
2019-09-05gnu: Add texlive-pstricks.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-pstricks): New variable.
2019-09-05gnu: Add texlive-ydoc.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-ydoc): New variable.
2019-09-05gnu: Add texlive-xcolor.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-xcolor): Bind to deprecated package pointing... (texlive-color): ...to this variable; implement in terms of simple-texlive-package. [arguments]: Add phase "move-files" to install xcolor.pro to the expected location.
2019-09-05gnu: texlive-fonts-iwona: Use double spacing in description.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-iwona)[description]: Use double spacing.
2019-09-05gnu: vigra-c: Update to 0.0.0-1.66ff4fa.Ricardo Wurmus
* gnu/packages/image.scm (vigra-c): Update to 0.0.0-1.66ff4fa. [inputs]: Add hdf5.
2019-09-05gnu: libbigwig: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libbigwig): Update to 0.4.4.
2019-09-05gnu: python-pyfaidx: Remove python-setuptools as an input.Christopher Baines
As this is provided by the build system, and I'm assuming that it's not necessary to have it as a propagated input. * gnu/packages/bioinformatics.scm (python-pyfaidx)[propagated-inputs]: Remove python-setuptools.
2019-09-05gnu: umi-tools: Remove python-setuptools as an input.Christopher Baines
As this is provided by the build system. * gnu/packages/bioinformatics.scm (umi-tools)[inputs,native-inputs]: Remove python-setuptools.
2019-09-05gnu: Syncthing: Update to 1.2.2.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 1.2.2. [inputs]: Remove go-github-com-calmh-du and add go-github-com-shirou-gopsutil.
2019-09-05gnu: Add go-github-com-shirou-gopsutil.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-shirou-gopsutil): New variable.
2019-09-05gnu: go-github-com-urfave-cli: Update to 1.21.0.Leo Famulari
* gnu/packages/golang.scm (go-github-com-urfave-cli): Update to 1.21.0.
2019-09-05gnu: emacs-org-contrib: Update to 20190904.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20190904.
2019-09-05gnu: emacs-org: Update to 9.2.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.6.
2019-09-05gnu: emacs-org-caldav: Update to 0.0.0-1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-caldav): Update to latest commit, since there is no release yet. [description]: Remove alpha status, no longer specified in README.
2019-09-05Revert "gnu: next: Compress the executable."Pierre Neidhardt
Some essential references (e.g. libfixposix) are lost in the process. This reverts commit 0e8b91dbc45306984d682307d8b40b0e323bb4be.
2019-09-05gnu: gama: Update to 2.07.Efraim Flashner
* gnu/packages/gps.scm (gama): Update to 2.07.
2019-09-05gnu: bwa-meth: Capture one more reference to "bwa".Ricardo Wurmus
Reported by: Alexander.Blume <Alexander.Blume@mdc-berlin.de> * gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Capture invocation of "bwa index" to retain reference to "bwa" package.
2019-09-05gnu: next: Compress the executable.Pierre Neidhardt
* gnu/packages/web-browsers.scm (next)[arguments]: Compressing the executable brings it from about 95 MiB to 22 MiB.
2019-09-05gnu: emacs-evil-collection: Update to 0.0.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.2.
2019-09-05gnu: Add r-bigmelon.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigmelon): New variable.
2019-09-05gnu: Add r-gdsfmt.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): New variable.
2019-09-05gnu: Add r-watermelon.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-watermelon): New variable.
2019-09-05gnu: Add r-illuminahumanmethylation450kanno-ilmn12-hg19.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): New variable.
2019-09-05gnu: Add r-roc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-roc): New variable.
2019-09-05gnu: efl: Update to 1.22.4.Efraim Flashner
* gnu/packages/enlightenment.scm (efl): Update to 1.22.4.
2019-09-05gnu: sbcl: Use CLISP instead of unboostrappable CCL to build.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl)[arguments]: Build with CLISP.
2019-09-05gnu: sbcl: Update to 1.5.6.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl): Update to 1.5.6.
2019-09-05gnu: dolphin-emu: Update to commit a974540.Rutger Helling
* gnu/packages/emulators.scm (dolphin-emu): Update to commit a974540. [source]: Delete unneeded MoltenVK map. [arguments]: Properly hardcode libvulkan path.
2019-09-05gnu: docker: Add support for tini.Maxim Cournoyer
* gnu/packages/docker.scm (docker)[inputs]: Add tini. [phases]{patch-paths}: Patch the path of the default init binary.
2019-09-05gnu: Add tini.Maxim Cournoyer
* gnu/packages/docker.scm (tini): New variable.
2019-09-05gnu: nginx: Update to 1.17.3 [security fixes].Marius Bakke
This release fixes CVE-2019-9511, CVE-2019-9513, and CVE-2019-9516. * gnu/packages/web.scm (nginx): Update to 1.17.3.
2019-09-05gnu: miniupnpc: Update to 2.1.20190824.Marius Bakke
* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190824.
2019-09-05gnu: varnish: Update to 6.2.1.Marius Bakke
* gnu/packages/web.scm (varnish): Update to 6.2.1.
2019-09-05gnu: libnl: Update to 3.5.0.Marius Bakke
* gnu/packages/linux.scm (libnl): Update to 3.5.0.
2019-09-05gnu: samba: Update to 4.10.8 [fixes CVE-2019-10197].Marius Bakke
* gnu/packages/samba.scm (samba): Update to 4.10.8.
2019-09-05gnu: tevent: Update to 0.10.1.Marius Bakke
* gnu/packages/samba.scm (tevent): Update to 0.10.1.
2019-09-05gnu: talloc: Update to 2.3.0.Marius Bakke
* gnu/packages/samba.scm (talloc): Update to 2.3.0.
2019-09-05gnu: tdb: Update to 1.4.2.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.4.2.
2019-09-05gnu: libvisio: Update to 0.1.7.Marius Bakke
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.7.
2019-09-05gnu: libabw: Update to 0.1.3.Marius Bakke
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.3. [arguments]: Remove.
2019-09-05gnu: LibRaw: Update to 1.19.5.Marius Bakke
* gnu/packages/photo.scm (libraw): Update to 0.19.5.
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