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2016-07-28gnu: r-genomicalignments: Update to 1.8.4....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4. Ben Woodcroft
2016-07-28gnu: r-rtracklayer: Update to 1.32.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2. Ben Woodcroft
2016-07-28gnu: r-genomeinfodb: Update to 1.8.3....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3. Ben Woodcroft
2016-07-28gnu: r-s4vectors: Update to 0.10.2....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2. Ben Woodcroft
2016-07-28gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}]....* gnu/packages/patches/mysql-fix-failing-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (mysql): Update to 5.7.13. Leo Famulari
2016-07-28gnu: the-silver-searcher: Update to 0.32.0....* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0. Tomáš Čech
2016-07-27gnu: imagemagick: Update to 6.9.5-3....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3. Leo Famulari
2016-07-27gnu: mariadb: Update to 10.1.16....* gnu/packages/databases.scm (mariadb): Update to 10.1.16. Leo Famulari
2016-07-27gnu: calibre: Update to 2.63.0....* gnu/packages/ebook.scm (calibre): Update to 2.63.0. [inputs]: Remove unnecessary imagemagick dependency. [phases]: Use modify-phases. * gnu/packages/patches/calibre-drop-unrar.patch: Update for new version. Signed-off-by: Roel Janssen <roel@gnu.org> Alex Griffin
2016-07-27system: Source /etc/environment before $HOME/.guix-profile/etc/profile....* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing of /etc/environment before that of $HOME/.guix-profile/etc/profile. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carlos Sánchez de La Lama
2016-07-27gnu: krona-tools: Update to 2.7....* gnu/packages/web.scm (krona-tools): Update to 2.7. [arguments]: Delete 'build' phase. Install new scripts. Ben Woodcroft
2016-07-27gnu: diamond: Update to 0.8.16....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16. Ben Woodcroft
2016-07-27gnu: guix: Update revision number in version....This is a follow-up to commit 95af24a2f1fb58eb9e6ee902c9330534f0aca9f3. Reported by Alex Kost <alezost@gmail.com>. Andreas Enge
2016-07-27gnu: magit: Fix rebase commands that require perl....* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'. [arguments]: Adjust 'patch-exec-paths' phase to make some rebase commands find 'perl'. Signed-off-by: Alex Kost <alezost@gmail.com> Alex Griffin
2016-07-27gnu: Add httping....* gnu/packages/networking.scm (httping): New variable. Tobias Geerinckx-Rice
2016-07-27gnu: Add missing copyright symbol....* gnu/packages/networking.scm: Add missing "©" to header comments. Tobias Geerinckx-Rice
2016-07-26gnu: gmime: Remove 'gpg' to 'gpg2' substitution....* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-07-26gnu: dmd: Remove package, superseded by shepherd....* gnu/packages/admin.scm (dmd): Remove variable. Andreas Enge
2016-07-26gnu: Add perl-db-file....* gnu/packages/databases.scm (perl-db_file): New variable. Signed-off-by: Andreas Enge <andreas@enge.fr> Danny Milosavljevic
2016-07-26gnu: icecat: Install icons....* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add 'install-icons' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Griffin
2016-07-26gnu: Add haveged....* gnu/packages/linux.scm (haveged): New variable. Tobias Geerinckx-Rice
2016-07-26gnu: Add perceptualdiff....* gnu/packages/image.scm (perceptualdiff): New variable. Tobias Geerinckx-Rice
2016-07-26gnu: linux-libre@4.1: Update to 4.1.28....* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28. Mark H Weaver
2016-07-26gnu: linux-libre: Update to 4.7....* gnu/packages/linux.scm (linux-libre): Update to 4.7. * gnu/packages/linux-libre-4.7-x86_64.conf, gnu/packages/linux-libre-4.7-i686.conf: New files. * gnu/packages/linux-libre-4.6-x86_64.conf, gnu/packages/linux-libre-4.6-i686.conf: Delete files. * Makefile.am (KCONFIGS): Update accordingly. Mark H Weaver
2016-07-26gnu: calibre: Build with non-modular Qt....* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT. [inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5. This essentially reverts commit 76806c54ed72f8f04079bbb187b186b833c103e1. Reported by Roel Janssen <roel@gnu.org>. Andreas Enge
2016-07-26gnu: pyqt: Add versions based on non-modular Qt 5.5....* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables. Andreas Enge
2016-07-25gnu: guix: Update development snapshot....* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef. Andreas Enge
2016-07-25system: Add mapped devices for RAID....* gnu/system/mapped-devices.scm (raid-device-mapping, open-raid-device, close-raid-device): New variables. * doc/guix.texi (Mapped Devices): Add documentation for RAID devices, reorganize documentation for LUKS devices. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Andreas Enge
2016-07-25gnu: emacs-solarized-theme: Remove unneeded dependencies....* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]: Remove 'emacs-f' and 'emacs-s'. Alex Kost
2016-07-25gnu: emacs: Install site-start.el in non-versioned directory....Reported by Ricardo Wurmus on #guix. * gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in "/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp" to let inherited package with another version find it. Alex Kost
2016-07-25gnu: Add guile-daemon....* gnu/packages/guile.scm (guile-daemon): New variable. Alex Kost
2016-07-25gnu: Add guile-xosd....* gnu/packages/guile.scm (guile-xosd): New variable. Alex Kost
2016-07-25gnu: Add xdpyprobe....* gnu/packages/xdisorg.scm (xdpyprobe): New variable. Alex Kost
2016-07-25gnu: mkfontdir: Do not propagate 'mkfontscale'....* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move 'mkfontscale' to ... [inputs]: ... here. [arguments]: Add 'wrap-mkfontdir' phase. Alex Kost
2016-07-25gnu: Add xfd....* gnu/packages/xorg.scm (xfd): New variable. Alex Kost
2016-07-25gnu: Add xfontsel....* gnu/packages/xorg.scm (xfontsel): New variable. Alex Kost
2016-07-25gnu: sbcl: Update to 1.3.7....* gnu/packages/lisp.scm (sbcl): Update to 1.3.7. [arguments]: During the patch-unix-tool-paths phase, avoid running substitute* on a utf-16-be encoded file. Signed-off-by: 宋文武 <iyzsong@gmail.com> Andy Patterson
2016-07-25gnu: ecl: Wrap with PATH, CPATH, LIBRARY_PATH, and LD_LIBRARY_PATH....* gnu/packages/lisp.scm (ecl)[arguments]: Add 'wrap' phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Andy Patterson
2016-07-25gnu: ecl: Enable tests....* gnu/packages/lisp.scm (ecl): Enable tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andy Patterson
2016-07-25gnu: ecl: Update to 16.1.2....* gnu/packages/lisp.scm (ecl): Update to 16.1.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andy Patterson
2016-07-25gnu: gnupg@2.1: Use 'modify-phases'....* gnu/packages/gnupg.scm (gnupg@2.1)[arguments]: Use 'modify-phases' syntax. Efraim Flashner
2016-07-25gnu: hdup: Update source url....* gnu/packages/backup.scm (hdup)[source]: Update url. Efraim Flashner
2016-07-24gnu: gnupg-2.1: Install executable as 'gpg'....* gnu/packages/gnupg.scm (gnupg-2.1)[arguments]: Add '--enable-gpg2-is-gpg' to #:configure-flags. Leo Famulari
2016-07-24gnu: gnupg@2.0: Add the 'gpg' and 'gpgv' commands....* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Add 'rename-v2-commands' phase. Ludovic Courtès
2016-07-24gnu: gnupg@2.0: Fix typo....* gnu/packages/gnupg.scm (gnupg@2.0)[arguments]: Fix typo that prevented gnupg from building. This is a follow up to 6b547d22952fb30c4419d4f81545353907ab398d. Efraim Flashner
2016-07-24gnu: exiv2: Update source url....* gnu/packages/geeqie.scm (exiv2)[source]: Update url. Efraim Flashner
2016-07-24doc: gnupg@2.0: Use 'modify-phases'....* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Use 'modify-phases'. Ludovic Courtès
2016-07-24gnu: icecat: Disable parallel build....* gnu/packages/gnuzilla.scm (icecat)[arguments]: Disable parallel build. Andreas Enge
2016-07-24gnu: icecat: Update to 38.8.0-gnu2....* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu2. Andreas Enge
2016-07-24gnu: openssh: Fix CVE-2016-6210....* gnu/packages/ssh.scm (openssh)[source]: Add patches openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch, openssh-CVE-2016-6210-3.patch. * gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file. * gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file. * gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
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