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2023-05-06gnu: mod-wsgi: Update to 4.9.4....* gnu/packages/web.scm (mod-wsgi): Update to 4.9.4. Ludovic Courtès
2023-05-06services: dbus-service, secret-service: Do not cause (fibers) to be loaded....* gnu/build/dbus-service.scm (sleep*): Pass #:ensure #f to 'resolve-module'. * gnu/build/secret-service.scm (wait-for-readable-fd): Likewise. Ludovic Courtès
2023-05-06tests: Add missing module imports for marionette-evaluated code....This missing imports became apparent with commit a09c7da8f8d8e732f969cf0a09aaa78f87032ab1, which runs the marionette service in a fresh Guile process with fewer imports. * gnu/tests/databases.scm (run-postgresql-test, run-timescaledb-test) (run-mysql-test): Add missing module imports for code passed to 'marionette-eval'. * gnu/tests/docker.scm (run-docker-test, run-docker-system-test): Likewise. * gnu/tests/mail.scm (run-dovecot-test, run-getmail-test): Likewise. * gnu/tests/monitoring.scm (run-zabbix-server-test): Likewise. * gnu/tests/pam.scm (run-test-pam-limits): Likewise. * gnu/tests/reconfigure.scm (run-switch-to-system-test) (run-install-bootloader-test): Likewise. * gnu/tests/security-token.scm (run-pcscd-test): Likewise. * gnu/tests/install.scm (gui-test-program): Likewise. * gnu/tests/telephony.scm (run-jami-test): Add modules to the #:imported-modules argument of 'marionette-operating-system'. [test]: Remove them from 'with-imported-modules'; remove 'with-extensions'. Add "d-bus tooling loaded" test to set up %load-path and %load-compiled-path so the marionette process can find guile-ac-d-bus and guile-packrat. Ludovic Courtès
2023-05-06gnu: guile-irc: Fix build....* gnu/packages/guile-xyz.scm (guile-irc)[arguments]: Add 'fix-autogen.sh phase to patch shebang removing leading space. [inputs]: Add guile-gnutls. Signed-off-by: Christopher Baines <mail@cbaines.net> Christopher Baines
2023-05-06gnu: ibus-libpinyin: Update to 1.15.2....* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.15.2. Ricardo Wurmus
2023-05-06gnu: libpinyin: Update to 2.8.1....* gnu/packages/ibus.scm (libpinyin): Update to 2.8.1. Ricardo Wurmus
2023-05-06gnu: ibus-libpinyin: Wrap setup tool in full GI_TYPELIB_PATH....* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Include GTK+ and its dependencies in the effective GI_TYPELIB_PATH of the setup executable. Ricardo Wurmus
2023-05-06gnu: ibus-libpinyin: Drop package labels and use G-exps....* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Use G-expression. [inputs]: Drop labels. Ricardo Wurmus
2023-05-06gnu: libnode: Use node-lts as base....* gnu/packages/node.scm (libnode): Use node-lts as base. * gnu/packages/cran.scm (r-v8)[arguments]<#:phases>: Adjusted accordingly. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Hilton Chain
2023-05-06gnu: node-lts: Update to 18.16.0....* gnu/packages/node.scm (node-lts): Update to 18.16.0. [snippet]: Keep file deps/openssl/nodejs-openssl.cnf. [arguments]<#:configure-flags>: Enable v8 snapshot compression. <#:phases>: Adjust problematic tests to delete accordingly. Patch additional file with hardcoded references to /bin/sh. [native-inputs,inputs]: Replace openssl-1.1 with openssl. Replace libuv-for-node with libuv. Replace nghttp2-for-node with nghttp2. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Co-authored-by: Jelle Licht <jlicht@fsfe.org> Hilton Chain
2023-05-06gnu: llhttp-bootstrap: Update to 6.0.10....* gnu/packages/node.scm (llhttp-bootstrap): Update to 6.0.10. * gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch: Remove file. * gnu/local.mk: Remove it. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Hilton Chain
2023-05-06gnu: emacs-nodejs-repl: Build with node-lts....* gnu/packages/emacs-xyz.scm (emacs-nodejs-repl)[inputs]: Replace node by node-lts. Jelle Licht
2023-05-06gnu: node-openzwave-shared: Fix compilation for new versions of node...* gnu/packages/zwave.scm (node-openzwave-shared)[arguments]<#:phases>: Add patch-compiler phase to allow compilation with node versions 16 and up. Jelle Licht
2023-05-06gnu: node-serialport: Avoid gyp rebuilds....* gnu/packages/node-xyz.scm (node-serialport)[arguments]<phases>: Explicitly disable gyp recompilation. Jelle Licht
2023-05-06gnu: node-uglify-js: Update to 3.14.2....* gnu/packages/uglifyjs.scm (node-uglify-js): Update to 3.14.2. Jelle Licht
2023-05-06gnu: node-yazl: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-yazl)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-ieee754: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-ieee754)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-resolve-protobuf-schema: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-resolve-protobuf-schema)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-protocol-buffers-schema: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-protocol-buffers-schema)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-pbf: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-pbf)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-minimist: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-minimist)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-crx3: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-crx3)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-buffer-crc32: Ignore development dependencies....* gnu/packages/node-xyz.scm (node-acorn)[arguments]<phases>: Explicitly patch out development dependencies. Re-enable configure phase. Jelle Licht
2023-05-06gnu: node-acorn: Fix broken transpilation....* gnu/packages/node-xyz.scm (node-acorn)[native-inputs]: Add `esbuild'. [arguments]<phases>: Replace build phase by custom `esbuild' invocations. Jelle Licht
2023-05-06gnu: node-acorn: Remove lifecycle script....* gnu/packages/node-xyz.scm (node-acorn)[arguments]<modules>: New argument. <phases>: Patch out unused 'prepare' script that breaks dependents. Jelle Licht
2023-05-06gnu: node-acorn: Disable tests....* gnu/packages/node-xyz.scm (node-acorn): Explicitly disable tests. Jelle Licht
2023-05-06services: guix-build-coordinator: Simpify service startup....Take advantage of changes in the build coordinator to reduce the complexity of the service startup script. * gnu/services/guix.scm (make-guix-build-coordinator-start-script): Remove the metrics registry and datastore. Christopher Baines
2023-05-06gnu: guix-build-coordinator: Update to 0-80.d030cac....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-80.d030cac. Christopher Baines
2023-05-06gnu: guix-data-service: Update to 0.0.1-40.3734a85...* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-40.3734a85. Christopher Baines
2023-05-06gnu: rizin: Fix build....* gnu/packages/engineering.scm (rizin)[arguments]: Skip failing tests. 宋文武
2023-05-06gnu: mupdf: Simplify snippet....* gnu/packages/pdf.scm (mupdf)[source]: Simplify code to remove unused thirdparty libs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2023-05-06gnu: mupdf: Update to 1.22.0....* gnu/packages/pdf.scm (mupdf): Update to 1.22.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2023-05-05gnu: git-crypt: Fix build issues on OpenSSL 3....* gnu/packages/version-control.scm (git-crypt)[arguments]: In 'build' phase, set 'CXXFLAGS'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sergey Trofimov
2023-05-05gnu: lttng-tools: Fix build failure....* gnu/packages/instrumentation.scm (lttng-tools) [native-inputs]: Add autoconf, automake, libtool. [arguments]: Add 'autoreconf build phase before 'configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Olivier Dion
2023-05-05gnu: bear: Build against 'abseil-cpp-cxxstd11'....Fixes a linker error when building bear, caused by incompatibility between abseil-cpp used by bear and abseil-cpp-cxxstd11 used by grpc. * gnu/packages/build-tools.scm (bear)[native-inputs]: Use ABSEIL-CPP-CXXSTD11. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andrew Whatson
2023-05-05gnu: guile2.0-shepherd: Remove....Version 0.9.x of the Shepherd requires Guile >= 2.2. * gnu/packages/admin.scm (guile2.0-shepherd): Remove. Ludovic Courtès
2023-05-05Revert "gnu: Add python-gimmemotifs."...This reverts commit dc8b3ebe5d4ba2a39c12f62d836963ffee1e4b47. python-gimmemotifs is not usable without proprietary third-party tools. Ricardo Wurmus
2023-05-05gnu: gcc-11: Fix patch-hurd-libpthread phase....It didn't work when it was introduced in 08acdd0765b5f4fbfafa699a823ea7985d4d35a7. * gnu/packages/gcc.scm (gcc-11)[arguments]: Remove the procedure arguments, and use %build-inputs rather than inputs. * gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Add hurd-patch, as this package inherits from gcc-11. Christopher Baines
2023-05-05gnu: Add python-gimmemotifs....* gnu/packages/bioinformatics.scm (python-gimmemotifs): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-norns....* gnu/packages/python-xyz.scm (python-norns): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-xdg....* gnu/packages/python-xyz.scm (python-xdg): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-qnorm....* gnu/packages/python-xyz.scm (python-qnorm): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-biofluff....* gnu/packages/bioinformatics.scm (python-biofluff): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-genomepy....* gnu/packages/bioinformatics.scm (python-genomepy): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-filelock-3.5....* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-logomaker....* gnu/packages/bioinformatics.scm (python-logomaker): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-mysql-connector-python....* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable. Ricardo Wurmus
2023-05-05gnu: Add protobuf-3.20....* gnu/packages/protobuf.scm (protobuf-3.20): New variable. Ricardo Wurmus
2023-05-05gnu: Add python-palettable....* gnu/packages/python-xyz.scm (python-palettable): New variable. Ricardo Wurmus
2023-05-05gnu: python-pyfaidx: Update to 0.7.2.1....* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1. [build-system]: Use pyproject-build-system. [arguments]: Ignore tests that require large downloads. [native-inputs]: Remove python-six; add python-fsspec, python-pytest, python-pytest-cov, python-mock, and python-numpy. Ricardo Wurmus