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2019-12-05gnu: libimagequant: Update to 2.12.5....* gnu/packages/image.scm (libimagequant): Update to 2.12.5. Tobias Geerinckx-Rice
2019-12-05gnu: procenv: Update to 0.51....* gnu/packages/linux.scm (procenv): Update to 0.51. Tobias Geerinckx-Rice
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascrip......This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’. Tobias Geerinckx-Rice
2019-12-05gnu: librsvg-next: Use generate-all-checksums....* gnu/packages/gnome.scm (librsvg-next)[arguments]: Use generate-all-checksums instead of manually traversing the directories. Efraim Flashner
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and st......* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp. Pierre Neidhardt
2019-12-04gnu: Remove unused module import....* gnu/packages/image.scm: Do not import (gnu packages gcc). Marius Bakke
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201....* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field. Marius Bakke
2019-12-04gnu: pd: Update to 0.50-2....* gnu/packages/music.scm (pd): Update to 0.50-2. Tobias Geerinckx-Rice
2019-12-04gnu: libgig: Update to 4.2.0....* gnu/packages/music.scm (libgig): Update to 4.2.0. Tobias Geerinckx-Rice
2019-12-04gnu: imapfilter: Update to 2.6.16....* gnu/packages/mail.scm (imapfilter): Update to 2.6.16. [arguments]: Remove ‘fix-include-path’ phase. Tobias Geerinckx-Rice
2019-12-04gnu: mpop: Update to 1.4.6....* gnu/packages/mail.scm (mpop): Update to 1.4.6. Tobias Geerinckx-Rice
2019-12-04gnu: girara: Fetch sources from git....The tarball URI is having server issues. Use the upstream git repository instead until this is resolved. Reported by Marius Bakke <mbakke@fastmail.com>. * gnu/packages/gtk.scm (girara)[source]: Switch to GIT-FETCH. Tobias Geerinckx-Rice
2019-12-04gnu: emacs-org-contrib: Fix build....* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Refer to the updated installation directory. Pierre Neidhardt
2019-12-04gnu: emacs-scel: Fix build....* gnu/packages/emacs-xyz.scm (emacs-scel): Refer to the updated installation directory. Pierre Neidhardt
2019-12-04gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331]....* gnu/packages/dns.scm (knot): Update to 2.9.1. Leo Famulari
2019-12-04gnu: notmuch: Fix build....* gnu/packages/mail.scm (notmuch): Refer to the updated installation directory. Pierre Neidhardt
2019-12-04gnu: ffmpeg: Update to 3.4.7....* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.7. Marius Bakke
2019-12-04gnu: feh: Update to 3.3....* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (feh): Update to 3.3. [source](patches): Remove. Marius Bakke
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: Remove duplicate nlohmann-json-cpp package....* gnu/packages/serialization.scm (nlohmann-json-cpp): Move variable ... * gnu/packages/cpp.scm (nlohmann-json-cpp): ... here. Mark as deprecated by JSON-MODERN-CXX. * gnu/packages/jupyter.scm (xeus)[inputs]: Change NLOHMANN-JSON-CPP to JSON-MODERN-CXX. * gnu/packages/video.scm (mkvtoolnix)[inputs]: Likewise. Marius Bakke
2019-12-04gnu: sunxi-tools: Simplify build....* gnu/packages/admin.scm (sunxi-tools-source): New procedure. (sunxi-target-tools): New variable. (sunxi-tools)[source]: Use sunxi-tools-source. [native-inputs]: Remove cross-gcc, cross-libc, cross-libc-static. Add sunxi-target-tools. [arguments]<#:make-flags>: Modify. [arguments]<#:phases>[set-environment-up]: Delete phase. [build-armhf]: Delete phase. [install]: Modify. Danny Milosavljevic
2019-12-04machine: ssh: <machine-ssh-configuration> can include the host key....* gnu/machine/ssh.scm (<machine-ssh-configuration>)[host-key]: New field. (machine-ssh-session): Pass #:host-key to 'open-ssh-session'. * doc/guix.texi (Invoking guix deploy): Document it. Ludovic Courtès
2019-12-04gnu: bitlbee: Use Python 3....* gnu/packages/messaging.scm (bitlbee)[inputs]: Replace python-2 with python. [arguments]: Set the PYTHON environment variable before configuring. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2019-12-04services: Add GNOME Keyring service....* gnu/services/desktop.scm: (<gnome-keyring-configuration>): New record type. (pam-gnome-keyring): New procedure. (gnome-keyring-service-type): New variable. * doc/guix.texi (Desktop Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Leo Prikler
2019-12-04gnu: ncmpc: Update to 0.36....* gnu/packages/mpd.scm (ncmpc): Update to 0.36. Leo Famulari
2019-12-04gnu: MPD: Update to 0.21.16....* gnu/packages/mpd.scm (mpd): Update to 0.21.16. Leo Famulari
2019-12-04gnu: tmux: Update to 3.0a....* gnu/packages/tmux.scm (tmux): Update to 3.0a. Leo Famulari
2019-12-04services: SSH services: Provide 'ssh' and 'sshd' Shepherd services....* gnu/services/ssh.scm (lsh-shepherd-service, dropbear-shepherd-service, openssh-sheperd-service): Add 'ssh' and 'sshd' to provision. Leo Famulari
2019-12-04gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008, CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012. * gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update hash for the firefox source tarball. Update to the latest from gnuzilla.git. Don't apply icecat-gnuzilla-fixes.patch. Remove determinism fix in makeicecat that is now upstream. Tweak a status message. (icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag. * gnu/packages/patches/icecat-makeicecat.patch: Adapt. Mark H Weaver
2019-12-04gnu: emacs-transient: Refer to the updated installation directory....* gnu/packages/emacs-xyz.scm (emacs-transient)[arguments]: Refer to the updated installation directory. Clément Lassieur
2019-12-04gnuL librsvg-next: Unvendor some rust crates....* gnu/packages/gnome.scm (computed-origin-method, librsvg-next-source): New variables. (librsvg-next)[source]: Use computed librsvg-next-source. [arguments]: Import %cargo-build-modules. Enable 'patch-source-shebangs, 'patch-generated-source-shebangs, 'patch-user-bin-file phases. Change custom phase to patch cargo checksums and Cargo.lock. Efraim Flashner
2019-12-04gnu: emacs-emacsql: Fix build....* gnu/packages/emacs-xyz.scm (emacs-emacsql): Refer to the updated installation directory. Signed-off-by: Clément Lassieur <clement@lassieur.org> Maxim Cournoyer
2019-12-04gnu: emacs-ert-runner: Fix build....* gnu/packages/emacs-xyz.scm (emacs-ert-runner): Refer to the updated installation directory. Signed-off-by: Clément Lassieur <clement@lassieur.org> Maxim Cournoyer
2019-12-04gnu: emacs: Use load-path instead of EMACSLOADPATH....This enables the use of the subdirs.el feature of Emacs, where specifying a directory in EMACSLOADPATH translates into a `load-path' variable containing the directory and all its sub-directories. * gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages): Use `load-path' directly instead of parsing EMACSLOADPATH. Reported-by: Leo Prikler <leo.prikler@student.tugraz.at> Signed-off-by: Clément Lassieur <clement@lassieur.org> Maxim Cournoyer
2019-12-04gnu: emacs: Fix guix-emacs.el indentation....* gnu/packages/aux-files/emacs/guix-emacs.el: Fix indentation. Signed-off-by: Clément Lassieur <clement@lassieur.org> Maxim Cournoyer
2019-12-04gnu: emacs: Simplify the EMACSLOADPATH search path specification....The EMACSLOADPATH can be greatly simplified by relying on a subdirs.el file that causes Emacs to search recursively a directory found in EMACSLOADPATH. * gnu/packages/emacs.scm (emacs)[native-search-paths]: Remove the match-all file pattern regexp. Remove the versioned site-lisp directory from searched files, as it appears unused by Emacs. Reported-by: Leo Prikler <leo.prikler@student.tugraz.at> Signed-off-by: Clément Lassieur <clement@lassieur.org> Maxim Cournoyer
2019-12-04gnu: r-catterplots: Update to 0-3.ae17cd5....* gnu/packages/statistics.scm (r-catterplots): Update to 0-3.ae17cd5. Ricardo Wurmus
2019-12-04gnu: hexchat: Fix up inputs....* gnu/packages/messaging.scm (hexchat)[inputs]: Move glib:bin ... [native-inputs]: ... to here. Efraim Flashner
2019-12-04gnu: ocaml-gen: Don't use unstable tarball....* gnu/packages/ocaml.scm (ocaml-gen)[source]: Download using git-fetch. Efraim Flashner
2019-12-04gnu: p7zip: Move *asm inputs to native-inputs....* gnu/packages/compression.scm (p7zip)[inputs]: Move yasm, nasm ... [native-inputs]: ... to here. Efraim Flashner
2019-12-04gnu: lablgtk: Use a source file-name....* gnu/packages/ocaml.scm (lablgtk)[source]: Add 'file-name'. Efraim Flashner
2019-12-04gnu: r-rversions: Update to 2.0.1....* gnu/packages/statistics.scm (r-rversions): Update to 2.0.1. Ricardo Wurmus
2019-12-04gnu: r-survival: Update to 3.1-8....* gnu/packages/statistics.scm (r-survival): Update to 3.1-8. Ricardo Wurmus
2019-12-04gnu: r-all: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-hsmmsinglecell: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-arrmdata: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-abadata: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-do-db: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]: Use bioconductor-uri. Ricardo Wurmus
2019-12-04gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use bioconductor-uri. Ricardo Wurmus