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2021-12-02gnu: khmer: Fix build with Python 3.8....* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T. [arguments]: Remove trailing #T from build phases; add build phase 'python-3.8-compatibility. Ricardo Wurmus
2021-12-02gnu: python-biom-format: Update to 2.1.10....* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10. [source]: Simplify snippet. [arguments]: Add phase 'relax; remove trailing #T from other build phases. [propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with python-pandas. Ricardo Wurmus
2021-12-02gnu: Add trayer-srg....* gnu/packages/wm.scm (trayer-srg): New variable. Co-authored-by: Disseminate Dissent <disseminatedissent@protonmail.com> Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2021-12-02gnu: pardre: Update to 2.2.5....* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5. [arguments]: Remove trailing #T and update comment about tests. Ricardo Wurmus
2021-12-02gnu: pardre: Use C++ bindings for MPI....* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with openmpi-c++. Ricardo Wurmus
2021-12-02gnu: Add openmpi-c++....* gnu/packages/mpi.scm (openmpi-c++): New variable. Ricardo Wurmus
2021-12-02gnu: Add libconfini....* gnu/packages/cpp.scm (libconfini): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Liliana Marie Prikler
2021-12-02gnu: shotcut: Update to 21.10.31....* gnu/packages/video.scm (shotcut): Update to 21.10.31. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vinicius Monego
2021-12-02gnu: kdenlive: Update to 21.08.3....* gnu/packages/kde.scm (kdenlive): Update to 21.08.3. [arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are currently disabled. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vinicius Monego
2021-12-02gnu: mlt: Update to 7.2.0....* gnu/packages/video.scm (mlt): Update to 7.2.0. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vinicius Monego
2021-12-02gnu: ccls: Update to 0.20210330....* gnu/packages/cpp.scm (ccls): Update to 0.20210330. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2021-12-02gnu: guile-udev: Update to 0.2.0...* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Artyom V. Poptsov
2021-12-02gnu: python-ipython: Update to 7.20.0....* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0. Ricardo Wurmus
2021-12-02gnu: python-ipython: Remove trailing #T....* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T from build phases. Ricardo Wurmus
2021-12-02gnu: yggdrasil: Simplify build phases....* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom 'build phase reusing go-build-system 'build phase. Remove custom 'install phase. Efraim Flashner
2021-12-02gnu: go-golang-zx2c4-com-wireguard: Fix downloading source....* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]: Adjust commit string in git-reference. Efraim Flashner
2021-12-02gnu: go-github-com-vividcortex-ewma: Adjust import-path....* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]: Adjust import-path to location other go packages expect it to be. Efraim Flashner
2021-12-02gnu: guix: Update to 8cc099b....* gnu/packages/package-management.scm (guix): Update to 8cc099b. Ludovic Courtès
2021-12-02gnu: Add python-mygene....* gnu/packages/bioinformatics.scm (python-mygene): New variable. Ricardo Wurmus
2021-12-02gnu: Add python-biothings-client....* gnu/packages/bioinformatics.scm (python-biothings-client): New variable. Ricardo Wurmus
2021-12-02gnu: Add r-scdblfinder....* gnu/packages/bioconductor.scm (r-scdblfinder): New variable. Ricardo Wurmus
2021-12-02Revert "gnu: godot: Update to 3.4."...This reverts commit dd4365efa1c6fb609de9bd7cd10f9c82e064aed4. We reverted this commit because it broke the operation of the only package in Guix that depends on Godot, SuperStarfighter: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20 Leo Famulari
2021-12-02gnu: cl-tooter: Update to 1.0.0-3.ec97bee....* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee. Signed-off-by: Leo Famulari <leo@famulari.name> cage
2021-12-02gnu: cl-i18n: Update to 0.5.1-1.4216fe9....* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9. Signed-off-by: Leo Famulari <leo@famulari.name> cage
2021-12-02gnu: godot: Update to 3.4....* gnu/packages/game-development.scm (godot): Update to 3.4. [source]: Add new bundled dependencies to the origin snippet. Signed-off-by: Leo Famulari <leo@famulari.name> Andy Tai
2021-12-01gnu: linux-libre 4.19: Update to 4.19.219....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-12-01gnu: linux-libre 5.4: Update to 5.4.163....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-12-01gnu: linux-libre 5.10: Update to 5.10.83....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-12-01gnu: linux-libre: Update to 5.15.6....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari
2021-12-02gnu: Remove couger....This package has been moved to the Guix Past channel. * gnu/packages/bioinformatics.scm (couger): Remove variable. Ricardo Wurmus
2021-12-02gnu: randomjungle: Fix compatibility errors....* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase 'fix-compatibility-errors to patch type errors. Ricardo Wurmus
2021-12-01gnu: icecat: Remove leftovers of release 78....No longer required as icedove is now based on the 91 branch. * gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove. (all-mozilla-78-locales): Remove. (%icecat-78-version): Remove. (icecat-78-source): Remove. Jonathan Brielmaier
2021-12-01gnu: icedove: Update to 91.3.2....The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may need to migrate (copy) your profile over. * gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2. [source]: Switch back to icecat-source. [arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during build, so it can't deleted in front. Remove surounding `'` from MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update path of `customizeToolbar.js`. Delete `'bootstrap` phase and no longer set AUTOCONF variable as the autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and MOZ_APP_NAME, the latter is the binary name. `--enable-calendar` flag got removed. Use bundled NSS until core-updates merge. [inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now. [native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4. Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`. Jonathan Brielmaier
2021-12-01gnu: Add nspr@4.32....Required for icecat/icedove 91. * gnu/packages/nss.scm (nspr-4.32): New variable. Jonathan Brielmaier
2021-12-01gnu: emacs-citar: Remove unnecessary input....* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex. Nicolas Goaziou
2021-12-01gnu: bullet: Update to 3.17....* gnu/packages/game-development.scm (bullet): Update to 3.17. [arguments]<#:configure-flags>: Disable access to third-party libs. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Andy Tai
2021-12-01gnu: Update Trezor support....* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Apply previous removal. * gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4. [source]: Remove now useless patch. (python-mnemonic): Update to 0.20. (python-trezor): Update to 0.12.4 (trezor-agent): Update to 0.11.0-1. [source]: Add file-name field. [arguments]: Remove trailing #T in phases. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Attila Lendvai
2021-12-01gnu: python-daemon: Update to 2.3.0....* gnu/packages/python-xyz.scm (python-daemon): Update to 2.3.0. [native-inputs]: Add python-coverage and python-twine. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Attila Lendvai
2021-12-01gnu: openssh: Add support for ecdsa-sk, ed25519-sk ssh keys....* gnu/packages/ssh.scm (openssh)[inputs]: Add LIBFIDO2. [arguments]: Pass "--with-security-key-builtin". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ahmad Jarara
2021-12-01gnu: Add libfido2....* gnu/packages/security-token.scm (libfido2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ahmad Jarara
2021-12-01gnu: Add libcbor....* gnu/packages/compression.scm (libcbor): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ahmad Jarara
2021-12-01gnu: Add vim-nerdtree....* gnu/packages/vim.scm (vim-nerdtree): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Foo Chuan Wei
2021-12-01gnu: Add smplayer....* gnu/packages/video.scm (smplayer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Attila Lendvai
2021-12-01gnu: Add python-codespell....* gnu/packages/python-xyz.scm (python-codespell): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2021-12-01installer: Make LUKS2 the default format for encrypted devices...* gnu/installer/parted.scm (luks-format-and-open): Change it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret
2021-12-01gnu: system: Add LUKS2 support for the root file system....* gnu/bootloader/grub.scm (grub-configuration-file): Add 'insmod luks2'. * gnu/system/mapped-devices.scm (open-luks-device): Create '/run/cryptsetup/' directory. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret
2021-12-01gnu: sdrangel: Add missing input....QtQuick is required by some runtime features. * gnu/packages/radio.scm (sdrangel)[inputs]: Add qtquickcontrols2. Guillaume Le Vaillant
2021-12-01gnu: python-language-server: Add deprecated alias....* gnu/packages/python-xyz.scm (python-language-server): New variable. Add deprecated alias for package removed in the parent commit. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> jgart via Guix-patches via
2021-12-01gnu: Add python-lsp-server....* gnu/packages/python-xyz.scm (python-language-server): Delete variable. * gnu/packages/python-xyz.scm (python-lsp-server): New variable. Removes deprecated python-language-server package and adds maintained fork. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> jgart via Guix-patches via
2021-12-01gnu: python-lsp-jsonrpc: Add deprecated alias....* gnu/packages/python-xyz.scm (python-jsonrpc-server): New variable. Add deprecated alias for package removed in the parent commit. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> jgart via Guix-patches via