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2022-05-06gnu: fenics: Honor #:tests? flag....* gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: fenics-dolfin: Honor #:tests? flag....* gnu/packages/simulation.scm (fenics-dolfin)[source]: Remove trailing boolean. [arguments]: Adjust custom 'check' phase to honor the #:tests? flag. While here, remove trailing booleans. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: Add Guix-Modules....* gnu/packages/package-management.scm (guix-modules): New variable. Ludovic Courtès
2022-05-06gnu: monero-gui: Update to 0.17.3.2....* gnu/packages/finance.scm (monero-gui): Update to 0.17.3.2. Guillaume Le Vaillant
2022-05-06gnu: monero: Update to 0.17.3.2....* gnu/packages/finance.scm (monero): Update to 0.17.3.2. [source]: Remove obsolete part of snippet. [arguments]: Remove trailing booleans. Guillaume Le Vaillant
2022-05-06gnu: Add dezyne....* gnu/packages/dezyne.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Jan (janneke) Nieuwenhuizen
2022-05-06gnu: mescc-tools: Update supported-systems....* gnu/packages/mes.scm (mescc-tools)[supported-systems]: Add riscv32-linux, riscv64-linux, remove powerpc64le-linux. Jan (janneke) Nieuwenhuizen
2022-05-06gnu: links: Use gexps....* gnu/packages/web-browsers.scm (links)[arguments]: Rewrite using gexps. Efraim Flashner
2022-05-06gnu: links: Remove input labels....* gnu/packages/web-browsers.scm (links)[inputs]: Remove input labels. Efraim Flashner
2022-05-06gnu: links: Use configure-flags....* gnu/packages/web-browsers.scm (links)[arguments]: Add configure-flags field. Adjust custom 'configure phase to use configure-flags. Efraim Flashner
2022-05-06gnu: links: Update to 2.26....* gnu/packages/web-browsers.scm (links): Update to 2.26. Efraim Flashner
2022-05-06gnu: ncdu-2: Update to 2.1.2....* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.2. Efraim Flashner
2022-05-06gnu: Add python-ipydatawidgets....* gnu/packages/jupyter.scm (python-ipydatawidgets): New variable. Ricardo Wurmus
2022-05-06gnu: Add python-xyzservices....* gnu/packages/python-xyz.scm (python-xyzservices): New variable. Ricardo Wurmus
2022-05-06gnu: Add python-mercantile....* gnu/packages/python-xyz.scm (python-mercantile): New variable. Ricardo Wurmus
2022-05-06gnu: Add python-ipympl....* gnu/packages/jupyter.scm (python-ipympl): New variable. Ricardo Wurmus
2022-05-06gnu: Add python-traittypes....* gnu/packages/python-science.scm (python-traittypes): New variable. Ricardo Wurmus
2022-05-06gnu: cava: Fix build failure...* gnu/packages/audio.scm (cava)[source]: Remove bundled iniparser. (cava)[inputs]: Add iniparser. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Daniel Meißner
2022-05-06gnu: cava: Use G-expressions....* gnu/packages/audio.scm (cava)[arguments]: Use G-expressions. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Daniel Meißner
2022-05-06gnu: nftables: Update to 1.0.2....* gnu/packages/patches/nftables-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (nftables): Update to 1.0.2. [source]: Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> kiasoc5
2022-05-06gnu: Add python-arpeggio....* gnu/packages/python-xyz.scm (python-arpeggio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Prat
2022-05-06gnu: ytfzf: Update to 2.3....* gnu/packages/patches/ytfzf-programs.patch, * gnu/packages/patches/ytfzf-updates.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): Unregister them. * gnu/packages/image-viewers.scm (ytfzf): Update to 2.3. [source]: Delete patches. [arguments]: Remove phase 'patch-script. Add phase 'install-addons, 'wrap-program. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2022-05-06gnu: slurm: Add 21.08.8....* gnu/packages/parallel.scm (slurm): Update to 21.08.8. (slurm-20.11): New variable. Ludovic Courtès
2022-05-06gnu: slurm: Update to 20.11.9 [fixes CVE-2022-{29500,29501,29502}]....* gnu/packages/parallel.scm (slurm): Update to 20.11.9. Ludovic Courtès
2022-05-06gnu: python-ipython: Add missing input....* gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Add python-decorator. Ricardo Wurmus
2022-05-06gnu: python-traitlets: Update to 5.1.1....* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.1.1. [propagated-inputs]: Remove python-ipython-genutils, python-decorator, and python-six. Ricardo Wurmus
2022-05-06gnu: Add python-kneed....* gnu/packages/python-xyz.scm (python-kneed): New variable. Ricardo Wurmus
2022-05-06gnu: Add python-databases....* gnu/packages/databases.scm (python-databases): New variable. Ricardo Wurmus
2022-05-06gnu: python-anyio: Update to 3.5.0....* gnu/packages/python-xyz.scm (python-anyio): Update to 3.5.0. [arguments]: Remove phase 'fix-compatibility; disable one more test. [propagated-inputs]: Add python-contextvars and python-dataclasses. [native-inputs]: Add python-contextlib2 and python-trio; remove python-iniconfig. Ricardo Wurmus
2022-05-06gnu: python-multipart: Fix test failure due to PyYAML 6....* gnu/packages/python-xyz.scm (python-multipart)[arguments]: Patch instance of yaml.load. Ricardo Wurmus
2022-05-05gnu: Add byacc....* gnu/packages/c.scm (byacc): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Foo Chuan Wei
2022-05-05gnu: b4: Update to 0.8.0....* gnu/packages/version-control.scm (b4): Update to 0.8.0. Ludovic Courtès
2022-05-05gnu: Add n2p2....* gnu/packages/maths.scm (n2p2): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Pierre-Antoine Bouttier
2022-05-05gnu: icedove: Update to 91.9.0 [fixes CVE-2022-1520]....* gnu/packages/gnuzilla.scm (icedove): Update to 91.9.0. Jonathan Brielmaier
2022-05-05gnu: python-pari-jupyter: Update to 1.4.1....* gnu/packages/python-xyz.scm (python-pari-jupyter): Update to 1.4.1. [home-page]: Update after maintainer change. Andreas Enge
2022-05-05gnu: cm: Update to 0.4.0....* gnu/packages/algebra.scm (cm): Update to 0.4.0. Andreas Enge
2022-05-03gnu: ungoogled-chromium: Update to 101.0.4951.54-1....* gnu/packages/chromium.scm (%chromium-version): Set to 101.0.4951.54. (%ungoogled-origin, ungoogled-chromium): Update hashes. Marius Bakke
2022-05-03gnu: icecat: Update to 91.9.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2022-29909, CVE-2022-29911, CVE-2022-29912, CVE-2022-29914, CVE-2022-29916, and CVE-2022-29917. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2022-05-03gnu: dealii: Update to 9.3.3....* gnu/packages/maths.scm (dealii): Update to 9.3.3. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: Delete file. * gnu/packages/patches/dealii-fix-sundials.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: dealii: Add SUNDIALS dependency....* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5. Reformat list to clarify comment. (dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: dealii-openmpi: Remove input labels....* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels. [propagated-inputs]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: dealii: Remove trailing booleans....* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and therefore the 'begin'). [native-inputs, inputs]: Reindent. [arguments]<#:phases>: Remove trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: sundials: Add 5.8.0....* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: sundials: Update to 6.2.0....* gnu/packages/maths.scm (sundials): Update to 6.2.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: sundials-openmpi: Add HYPRE dependency....* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add hypre-openmpi. [arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR and -DHYPRE_LIBRARY_DIR. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: sundials: Fix various issues....This commit fixes various issues. First, some of SUNDIALS's CMake variables were renamed at some point between 5.2.0 and 5.7.0, in particular KLU_ENABLE, which was changed to ENABLE_KLU. Since sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need to be different from those of the sundials package. Second, commit 61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79, which updated SUNDIALS to 6.1.1, accidentally completely disabled PETSc support for sundials-openmpi (PETSc is supported only with MPI) by removing the relevant configure flags. Third, SUNDIALS's default index size is 64 bits, but PETSc's is 32 bits, and they need to be the same; this issue is discussed in the next three paragraphs. The default index size in SUNDIALS 3.1.1 (which was the sundials package's version previous to the aforementioned commit) was also 64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake variable, which could take the values INT64_T or INT32_T), but SUNDIALS's configure script didn't warn of any incompatibility with PETSc's 32-bit indices. I don't know if this was an accidental omission from the configure script or if SUNDIALS's index size didn't have to correspond to PETSc's at the time. Keeping 64-bit indices in SUNDIALS would require adding a package for PETSc with 64-bit indices (using the --with-64-bit-indices configure flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH packages, i.e., scotch, scotch32, etc., though there the unadorned package name represents the 64-bit version, unlike the unadorned petsc), which would in turn require a package for METIS with 64-bit indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional dependency of deal.II, both of which have PETSc as an optional dependency, and deal.II's index size (which defaults to 32 bits) must match PETSc's. In other words, the current deal.II package can build with SUNDIALS only if SUNDIALS has 32-bit indices. Furthermore, users needing 64-bit indices in SUNDIALS probably also need them in PETSc and other libraries. If and when 64-bit indices are deemed necessary, we can add all the package variations at once (for SUNDIALS, PETSc, METIS, deal.II and any others). * gnu/packages/maths.scm (sundials)[source]: Reuse version in URL. [native-inputs]: Capitalize and punctuate comment. [inputs]: Remove petsc, now unnecessary gfortran, and obsolete comment. Move TODO item to sundials-openmpi. [arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77, -DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently unusable -DBUILD_FORTRAN_MODULE_INTERFACE and -DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU. (sundials-openmpi): Use package/inherit. [inputs]: Move openmpi and petsc-openmpi from here... [propagated-inputs]: ...to here. Clarify comment. [arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the equivalents of which were accidentally removed in commit 61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79. <#:phases>: Replace a tab with spaces. [synopsis]: Replace OpenMPI with MPI to conform to other package synopses. (sundials-julia)[inputs]: Add gfortran. [arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS, -DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR, -DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the sundials package, because some of SUNDIALS's CMake variables have changed name. [synopsis]: Capitalize “LAPACK”. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03gnu: petsc-openmpi: Fix header inclusions....* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add 'patch-header-inclusions' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-03services: pipefs: Correctly handle lack of extensions....Previously, in the absence of extensions of 'pipefs-service-type', we'd get a wrong-type-arg exception while folding services: In gnu/services/nfs.scm: 134:37 1 (_ #<<pipefs-configuration> mount-point: "/var/lib/nfs…> …) In ice-9/boot-9.scm: 1685:16 0 (raise-exception _ #:continuable? _) In procedure car: Wrong type argument in position 1 (expecting pair): () * gnu/services/nfs.scm (pipefs-service-type)[extend]: Gracefully handle the case where VALUES is the empty list, as done in 'gss-service-type'. Ludovic Courtès
2022-05-02gnu: Mutt: Update to 2.2.4....* gnu/packages/mail.scm (mutt): Update to 2.2.4. Leo Famulari
2022-05-02gnu: linux-libre 4.19: Update to 4.19.241....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.241. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari