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2021-06-03machine: ssh: Respect calling convention for monadic procedures.Ludovic Courtès
Fixes a regression introduced in 2885c3568edec35086f8feeae5b60259cbea407c. Reported by Mathieu Othacehe. * gnu/machine/ssh.scm (deploy-managed-host)[eval/error-handling]: Return two values in the standard case.
2021-06-03gnu: Add fit-sne.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (fit-sne): New variable.
2021-06-03gnu: r-with-tests: Use patched texlive-amsfonts.Lars-Dominik Braun
See commit 75af43162e58a0b3fdc804963809ecb801fb81b7. * gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Replace texlive-amsfonts with texlive-amsfonts/patched.
2021-06-03gnu: openshot: Use free font.Leo Prikler
* gnu/packages/video.scm (openshot)[inputs]: Use font-dejavu. [patch-font-location]: Adjust accordingly.
2021-06-03gnu: Remove font-ubuntu.Leo Prikler
The Ubuntu Font License has not been approved by the FSF and is considered non-free by Debian and Fedora, see <https://bugs.gnu.org/48802>. * gnu/packages/fonts.scm (font-ubuntu): Removed variable.
2021-06-03gnu: Add legit.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-legit, ecl-legit, sbcl-legit): New variables.
2021-06-03gnu: Add simple-inferiors.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-simple-inferiors, ecl-simple-inferiors, sbcl-simple-inferiors): New variables.
2021-06-02gnu: curl: Update to 7.77.0 [fixes CVE-2021-{22897,22898,22901}].Leo Famulari
* gnu/packages/curl.scm (curl/fixed): Replace with ... (curl-7.77.0): ... new variable. (curl)[replacement]: Use curl-7.77.0.
2021-06-02gnu: expat: Replace with 2.4.1 [fixes CVE-2013-0340].Marius Bakke
* gnu/packages/xml.scm (expat-2.4.1): New variable. (expat)[replacement]: New field. Co-authored-by: Leo Famulari <leo@famulari.name>
2021-06-02gnu: Add emacs-org-pandoc-import.Xinglu Chen
* gnu/packages/emacs-xyz.scm (emacs-org-pandoc-import): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-02gnu: pioneer: Build with model files.Diego Nicola Barbato
Fixes <https://bugs.gnu.org/48686>. * gnu/packages/games.scm (pioneer)[arguments]: Add make-flags for building with model files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-02gnu: r-robustbase: Update to 0.93-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-8.
2021-06-02gnu: r-deoptimr: Update to 1.0-9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-9.
2021-06-02gnu: r-beeswarm: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-beeswarm): Update to 0.4.0.
2021-06-02gnu: r-fastcluster: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.2.3.
2021-06-02gnu: r-matrixstats: Update to 0.59.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.59.0.
2021-06-02gnu: r-e1071: Update to 1.7-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-7.
2021-06-02gnu: r-rcpparmadillo: Update to 0.10.5.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.5.0.0.
2021-06-02gnu: r-rversions: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rversions): Update to 2.1.1.
2021-06-02gnu: r-formatr: Update to 1.11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formatr): Update to 1.11.
2021-06-02gnu: r-mgcv: Update to 1.8-36.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-36.
2021-06-02gnu: r-matrix: Update to 1.3-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-4.
2021-06-02gnu: r-textshape: Update to 1.7.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-textshape): Update to 1.7.3.
2021-06-02gnu: r-calculus: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-calculus): Update to 0.3.1.
2021-06-02gnu: r-seurat: Update to 4.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 4.0.2.
2021-06-02gnu: r-parsnip: Update to 0.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.6. [propagated-inputs]: Add r-lifecycle.
2021-06-02gnu: r-clusterr: Update to 1.2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.5.
2021-06-02gnu: r-rsconnect: Update to 0.8.18.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.18.
2021-06-02gnu: r-forecast: Update to 8.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.15.
2021-06-02gnu: r-archivist: Update to 2.3.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-archivist): Update to 2.3.6.
2021-06-02gnu: r-biclust: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-biclust): Update to 2.0.3.
2021-06-02gnu: r-actuar: Update to 3.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-actuar): Update to 3.1-4.
2021-06-02gnu: r-gdina: Update to 2.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-gdina): Update to 2.8.7.
2021-06-02gnu: r-parameters: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.14.0.
2021-06-02gnu: r-leiden: Update to 0.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-leiden): Update to 0.3.8.
2021-06-02gnu: r-plot3d: Update to 1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-plot3d): Update to 1.4.
2021-06-02gnu: r-dalex: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 2.2.1.
2021-06-02gnu: r-spdep: Update to 1.1-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-spdep): Update to 1.1-8. [source]: Remove generated files, including Rmarkdown files whose outputs conflict with the main Rmarkdown file.
2021-06-02gnu: r-tidytree: Update to 0.3.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.4.
2021-06-02gnu: r-ks: Update to 1.13.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ks): Update to 1.13.1. [propagated-inputs]: Add r-pracma.
2021-06-02gnu: r-weights: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-weights): Update to 1.0.2. [propagated-inputs]: Add r-lme4.
2021-06-02gnu: r-mvabund: Update to 4.1.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.12.
2021-06-02gnu: r-sjplot: Update to 2.8.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.8.
2021-06-02gnu: r-effectsize: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.5.
2021-06-02gnu: r-bayestestr: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.0.
2021-06-02gnu: r-emmeans: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.1.
2021-06-02gnu: r-manipulatewidget: Update to 0.11.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.0. [propagated-inputs]: Add r-shinyjs. [native-inputs]: Add r-knitr.
2021-06-02gnu: r-insight: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.14.1.
2021-06-02gnu: r-rdpack: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.2.
2021-06-02gnu: r-fansi: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-fansi): Update to 0.5.0.
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