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2022-05-28guix: Upgrade to Bioconductor 3.15.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same.
2022-05-25build-system: linux-module: Directly use-module (guix platform).Josselin Poiret
* guix/build-system/linux-module.scm (system->arch): Remove module-ref shenanigans. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-22linux: Remove system->linux-architecture procedure.Mathieu Othacehe
* gnu/packages/linux.scm (system->linux-architecture): Remove it. (make-linux-libre-headers*, make-linux-libre*): Adapt them. * guix/build-system/linux-module.scm (system->arch): Adapt it. * gnu/packages/instrumentation.scm (uftrace): Ditto. * gnu/packages/cross-base.scm (cross-kernel-headers): Ditto. * gnu/packages/bioinformatics.scm (ncbi-vdb): Ditto. * doc/guix.texi (Porting to a new platform): Update it.
2022-05-22gnu: elm: Support 'elm reactor'.Philip McGrath
* gnu/packages/elm.scm (elm): Rename to ... (elm-sans-reactor): ... this new variable. [synopsis, description]: Tweak. (elm): New variable. * guix/build-system/elm.scm (default-elm): Use elm-sans-reactor. * doc/guix.texi (Build Systems)[elm-build-system]: Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22build-system/elm: Add implicit Elm inputs.Philip McGrath
* guix/build-system/elm.scm (default-elm-core): New variable. (default-elm-json): Likewise (lower): Use them as implicit inputs when applicable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22guix: Add elm-build-system.Philip McGrath
* gnu/packages/patches/elm-offline-package-registry.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/elm.scm (elm): Use it. * guix/build-system/elm.scm, guix/build/elm-build-system.scm, tests/elm.scm: New files. * Makefile.scm (MODULES, SCM_TESTS): Add them. * doc/guix.texi (Build Systems): Document 'elm-build-system'. * doc/contributing.texi (Elm Packages): New section. Document naming conventions and utilities. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-16Revert "gnu: Add %final-inputs-riscv64."Efraim Flashner
This reverts commit 0444be868903356a37fc8ffd3cdf820ca038f3e6. This is no longer necessary after the gcc STARTFILE_PREFIX_SPEC commit.
2022-03-14build-system/ocaml: Use standard packages as "build inputs".Ludovic Courtès
Conceptually, "standard packages" (GCC, Coreutils, etc.) are "build inputs". In the absence of cross-compilation support, this change has no effect, except for things like '--tune' that expect the compiler to be among the build inputs. * guix/build-system/ocaml.scm (lower): Move (standard-packages) from 'host-inputs' to 'build-inputs'.
2022-03-07build-system/meson: Add more cross-compilation targets.Efraim Flashner
* guix/build-system/meson.scm (make-machine-alist): Add riscv64-linux option for cpu_family. Add riscv64-linux and powerpc-linux options for endian.
2022-02-24build: julia: Add 'julia-package-dependencies' as keyword.Efraim Flashner
* guix/build-system/julia.scm (link-depot): Accept julia-package-dependencies keyword and use it for 'julia-create-package-toml' function. (julia-create-package-toml): Use pattern matching. (julia-build): Add 'julia-pacakge-dependencies'. * guix/build/julia-build-system.scm (julia-build): Add '#:julia-package-dependencies' keyword. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-02-11build-system/texlive: Be explicit about #:guile-for-build.Ludovic Courtès
This ensures package derivations are not a function of the value of (%guile-for-build). * guix/build-system/texlive.scm (texlive-build): Explicitly pass #:guile-for-build to 'gexp->derivation'.
2022-01-27gnu: Add %final-inputs-riscv64.Efraim Flashner
* gnu/packages/commencement.scm (%final-inputs-riscv64): New variable. * guix/build-system/gnu.scm (standard-inputs): Use %final-inputs-riscv64 when targeting riscv64-linux.
2022-01-24build-system/clojure: Support compiling Java.Reily Siegel
* guix/build/clojure-build-system.scm (compile-java): New variable. (build): Copy classes compiled from Java and optionally Java sources to the final jar. (%standard-phases): Add compile-java phase before build. * guix/build/clojure-utils.scm (%java-source-dirs): New variable. (%java-compile-dir): New variable. * guix/build-system/clojure.scm (clojure-build): Include %java-source-dirs and %java-compile-dir. (builder): Include %java-source-dirs and %java-compile-dir. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-16build-system/linux-module: Use G-expressions.Tobias Geerinckx-Rice
* guix/build-system/linux-module.scm (make-linux-module-builder) [arguments]: Rewrite as G-expressions.
2022-01-12build-system: clojure: Allow clojure-build-system to pass source to ant.Reily Siegel
Fixes <https://bugs.gnu.org/52598>. * guix/build-system/clojure.scm (lower): Remove #:source from private keywords, preventing an error in ant-build-system. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-01-11build-system: Pass #:make-dynamic-linker-cache? #f when cross-compiling.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/52898>. Reported by Maxime Devos <maximedevos@telenet.be>. This is a followup to 1209447ad3f471d12e9408dd478b3cfcd7b7a07e. * guix/build-system/cmake.scm (cmake-cross-build)[builder]: Pass #:make-dynamic-linker-cache? #f. * guix/build-system/go.scm (go-cross-build)[builder]: Ditto. * guix/build-system/guile.scm (guile-cross-build)[builder]: Ditto. * guix/build-system/qt.scm (qt-cross-build)[builder]: Ditto.
2022-01-09guix: node-build-system: Add implicit libuv input.Philip McGrath
* guix/build-system/node.scm (lower): Add the version of libuv used as an input to the #:node package as an additional implicit input, so that packages needing libuv always get the correct version. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-12-24build-system/go: Add pre-built standard library as implicit input.Sarah Morgensen
* gnu/packages/golang.scm (make-go-std): New procedure. * guix/build-system/go.scm (make-go-std): New procedure. (lower): Use it. Add pre-built standard library to inputs. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-24build-system/go: Add #:substitutable? argument.Sarah Morgensen
* guix/build-system/go.scm (go-build): Add 'substitutable?' argument. (go-cross-build): Likewise. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-20build-system/meson: Define build variables when cross-compiling.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/52574>. Reported by L p R n d n <guix@lprndn.info>. * guix/build-system/meson.scm (meson-cross-build)[builder]: Define '%build-host-inputs', '%build-target-inputs', '%build-inputs', and '%outputs'.
2021-12-15build-system/linux-module: Wrap with build variables.Tobias Geerinckx-Rice
* guix/build-system/linux-module.scm (linux-module-build): Wrap the builder gexp WITH-BUILD-VARIABLES to restore %build-inputs after commit 7d873f194ca69d6096d28d7a224ab78e83e34fe1 removed all old certainties. Reported by lfam in #guix.
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-01build-system: haskell: Add ‘hackage-uri’ procedure.Xinglu Chen
* guix/build-system/haskell (hackage-uri): New procedure. * guix/import/hackage.scm (hackage-module->sexp, latest-release): Use it. * tests/hackage.scm (match-ghc-foo, match-ghc-foo-6, match-ghc-foo-revision, match-ghc-foo-import): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-25build: julia-build-system: Add support for parallel tests.zimoun
The tests are defined by the script 'test/runtests.jl' from packages and the parallelism depends on the implementation of this script. Therefore, 'julia' is launched using local worker processes accordingly with 'parallel?'. * guix/build/julia-build-system.scm (check): Set the JULIA_CPU_THREADS environment variable and invoke julia with the '--procs' option. * guix/build-system/julia.scm (julia-build)[parallel-tests?]: New argument. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-23Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-19build-system/asdf: Don't fail in sbcl-package->cl-source-package on ↵Pierre Neidhardt
non-package inputs. Inputs can be non-packages, for instance (origin ...). sbcl-package->cl-source-package used to fail if such inputs were present in the parent sbcl-* package. * guix/build-system/asdf.scm (package-with-build-system): Fix 'has-from-build-system?' function.
2021-11-18build-system/go: Update cross-compilation support to new interface.Ludovic Courtès
* guix/build-system/go.scm (go-cross-build): Remove 'store', 'native-drvs' and 'target-drvs'; add 'source', 'build-inputs', 'target-inputs', and 'host-inputs'. Change default value of #:phases. [builder]: Rewrite as a gexp. Rewrite body to call 'gexp->derivation' instead of 'build-expression->derivation'.
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-16build-system/julia: Enable Julia Pkg to find installed packages.Jean-Baptiste Volatier
Julia's built-in package manager (Pkg) looks for packages in JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string encoding package UUID and SHA1 of files. The link-depot phase creates a link at the correct location to allow Pkg to find packages that were already installed by Guix. * guix/build/julia-build-system.scm (link-depot): New phase. (%package-path): Modified package path from packages/ to loadpath/. (project.toml->uuid): New procedure, retrive package uuid from TOML file. (precompile, check): Adjust to the change in paths. (%standard-phases): Add link-depot phase. (julia-build): Add julia-package-uuid keyword. * guix/build-system/julia.scm (julia-build): Also use the julia-package-uuid keyword. * gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll, julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll, julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll, julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll, julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll, julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll, julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll, julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll, julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll, julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll, julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll, julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll, julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll, julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll, julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll, julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll, julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll, julia-xorg-libxfixes-jll, julia-xorg-libxi-jll, julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll, julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll, julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll, julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll, julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll, julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll) [argument]: Adjust the order of the phases to the change in the julia-build-system. * gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus, julia-dataframes, julia-datavalues, julia-distances, julia-documenter, julia-dualnumbers, julia-ellipsisnotation, julia-expronicon, julia-fileio, julia-fixedpointnumbers, julia-functionwrappers, julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur, julia-geometrybasics, julia-imagemagick, julia-infinity, julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib, julia-optimtestproblems, julia-orderedcollections, julia-prettytables, julia-pycall, julia-quadmath, julia-safetests, julia-stackviews) [arguments]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory add package-name-uuid keyword argument to packages without Project.toml file. * gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-11build: meson: Replace the 'test-target' argument by 'test-options'.Maxim Cournoyer
This change is motivated by the need to disable the default 30 seconds timeout that Meson uses (see: https://gitlab.gnome.org/GNOME/glib/-/issues/2522), and also by desire to specify extra options to run the check phase without having to override it. * guix/build-system/meson.scm (meson-build) <test-target>: Replace argument with... <test-options>: ... this one. * guix/build/meson-build-system.scm (check): Invoke 'meson test' instead of 'ninja test-target', as the former is configurable via options. * doc/guix.texi (Build Systems) <meson-build-system>: Update doc.
2021-11-11build: glib-or-gtk: Generate the gdk-pixbuf-loaders cache file in a phase.Maxim Cournoyer
Adding a profile hook to do so covers most use cases, but it is still necessary to have the gdk-pixbuf loaders cache file computed at build time, as software may expect to find loaders support at that time. * guix/build/glib-or-gtk-build-system.scm: Delete trailing #t. (%gdk-pixbuf-loaders-cache-file-prefix): New variable. (generate-gdk-pixbuf-loaders-cache): New procedure. (generate-gdk-pixbuf-loaders-cache-file): Add procedure... (%standard-phases): ... and register it as a build phase.
2021-11-08Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-07guix: Upgrade to Bioconductor 3.14.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same.
2021-10-18Merge remote-tracking branch 'signed/master' into core-updatesMathieu Othacehe
2021-10-18build-system/go: Fix building on host's secondary architecture.Efraim Flashner
Before when building for i686-linux on x86_64-linux GOARCH would be set to amd64, not 386. * guix/build-system/go.scm (go-build): Set goarch and goos to #f when not cross-compiling. * guix/build/go-build-system.scm (setup-go-environment): Set GOARCH according to the calculated goarch or using GOHOSTARCH and GOOS according to the calculated goos or using GOHOSTOS.
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-10-08Revert the #51061 patch series for now.Tobias Geerinckx-Rice
This reverts commits f63c79bf7674df012517f8e9148f94c611e35f32 ..f86f7e24b39928247729020df0134e2e1c4cde62 for more chillax reviewing. See <https://issues.guix.gnu.org/51061#32>.
2021-10-07build-system: Add 'rebar3-build-system'.Hartmut Goebel
* guix/build-system/rebar3.scm, guix/build/rebar3-build-system.scm: New files. * Makefile.am (MODULES): Add them.
2021-10-01build-system: linux-module: Build and install in parallel.Tobias Geerinckx-Rice
* guix/build-system/linux-module.scm (linux-module-build) (guix/build-system/linux-module.scm): Accept the PARALLEL-BUILD? keyword and pass it on to the builder. * guix/build/linux-module-build-system.scm (build, install): Capture and honour it.
2021-09-25Update copyright assignments for Liliana Marie Prikler.Liliana Marie Prikler
* doc/guix.texi: Update copyright name for Liliana Marie Prikler. * gnu/packages/build-tools.scm: Update copyright name and email for Liliana Marie Prikler. * gnu/packages/convmv.scm: Likewise. * gnu/packages/emacs-xyz.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/esolangs.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome-xyz.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gstreamer.scm: Likewise. * gnu/packages/guile-xyz.scm: Likewise. * gnu/packages/minetest.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/patches/minetest-add-MINETEST_MOD_PATH.patch: Likewise. * gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Likewise. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Likewise. * gnu/packages/python-xyz.scm: Likewise. * gnu/packages/unicode.scm: Likewise. * gnu/packages/xorg.scm: Likewise. * gnu/services/sound.scm: Likewise. * guix/build-system/renpy.scm: Likewise. * guix/build/emacs-utils.scm: Likewise. * guix/build/renpy-build-system.scm: Likewise.
2021-09-25gexp: Leave grafting as is when lowering allowed/disallowed references.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/50676>. Reported by Mathieu Othacehe <othacehe@gnu.org>. Commit a779363b6aa581e88eda21f9f35530962d54ac25 was partially incorrect: references passed to #:allowed-references or #:references-graphs *can* be lowered as references to grafted elements. This is for example the case when doing: (computed-file "partition.img" exp #:options `(#:references-graphs ,inputs)) Here INPUTS must be lowered as a reference to suitably grafted elements. Failing to do that, the reference graph will not match the actual INPUTS. However, when building a package, those references must indeed refer only to ungrafted packages. This commit preserves that by having build systems pass #:graft? #f. * guix/gexp.scm (lower-reference-graphs, lower-references): Remove uses of 'without-grafting'. This reverts a779363b6aa581e88eda21f9f35530962d54ac25. * guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Pass #:graft? #f. * guix/build-system/glib-or-gtk.scm (glib-or-gtk-build) (glib-or-gtk-cross-build): Likewise. * guix/build-system/gnu.scm (gnu-build, gnu-cross-build): Likewise. * guix/build-system/meson.scm (meson-build, meson-cross-build): Likewise. * guix/build-system/trivial.scm (trivial-build, trivial-cross-build): Likewise. * tests/gexp.scm ("lower-object, computed-file + grafts"): New test. * tests/packages.scm ("trivial with #:allowed-references + grafts"): New test.
2021-09-20build-system/glib-or-gtk: Support cross-compilaton.Maxime Devos
* guix/build-system/glib-or-gtk.scm (lower): Add 'implicit-cross-inputs?' argument. Generate a bag when cross-compiling. (glib-or-gtk-cross-build): New procedure.
2021-09-20build-system/meson: Allow 'configure-flags' to be a G-exp.Maxime Devos
* guix/build-system/meson.scm (meson-build, meson-cross-build): Only call 'sexp->gexp' on 'configure-flags' when 'configure-flags' is a pair.
2021-09-17Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/bioinformatics.scm gnu/packages/chez.scm gnu/packages/docbook.scm gnu/packages/ebook.scm gnu/packages/gnome.scm gnu/packages/linux.scm gnu/packages/networking.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/tex.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/dune.scm guix/build-system/go.scm guix/build-system/linux-module.scm guix/packages.scm
2021-09-14build-system: linux-module: Support source-directory.Liliana Marie Prikler
As with guile-build-system, the module to be build need not necessarily live at the root of the build tree. * guix/build/linux-module-build-system.scm (build, install): Add source-directory argument and append it to "M" variable when invoking make. * guix/build-system/linux-module.scm (linux-module-build): Add source-directory argument.
2021-09-13build/go: Support cross compiling.Efraim Flashner
* guix/build-system/go.scm (go-target): New procedure. (go-build): Add goarch, goos keywords. Adjust bag depending if doing a native or cross compile. (go-cross-build): New procedure. * guix/build/go-build-system.scm (setup-go-environment): Accept goarch, goos keywords. Set go environment variables based on target architecture. * doc/guix.texi (Build Systems): Mention new go-build-system keywords.
2021-09-08guix: dune-build-system: Put dune into a reproducible release mode.pukkamustard
* guix/build/dune-build-system.scm (build,check): Replace the profile parameter with the appropriate release flags. * guix/build-system/dune.scm: Remove the profile parameter. * doc/guix.texi: Remove paragraph on profile parameter. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-09-07Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-07-29Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm
2021-07-29build-system: asdf: Remove %build-inputs reference.Mathieu Othacehe
This is a follow-up of 7d873f194ca69d6096d28d7a224ab78e83e34fe1 that removes the %build-inputs variable. * guix/build-system/asdf.scm (asdf-build): Remove %build-inputs reference.
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