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2021-06-05guix: Update to Bioconductor 3.13.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Update version. * guix/import/cran.scm (%bioconductor-version): Update.
2021-05-08build-system: asdf: Work around package-name->name+version bug.Guillaume Le Vaillant
This patch modifies how the name of the main Common Lisp system is extracted from the full Guix package name to work around bug#48225 concerning the 'package-name->name+version' function. Fixes <https://issues.guix.gnu.org/41437>. * guix/build-system/asdf.scm (asdf-build): Fix 'systems' function. * guix/build/asdf-build-system.scm (main-system-name): Fix it.
2021-04-09import: go: Add an option to use pinned versions.Maxim Cournoyer
The ability to pin versions is handy when having to deal to packages that bootstrap themselves through a chain of former versions. Not using pinned versions in these case could introduce dependency cycles. * guix/build-system/go.scm (guix) (%go-version-rx): Rename to... (%go-pseudo-version-rx): ... this. Simplify the regular expression, which in turns makes it more robust. * guix/build-system/go.scm (go-version->git-ref): Adjust following the above rename. (go-pseudo-version?): New predicate. (go-module-latest-version): Rename to ... (go-module-version-string): ... this. Rename goproxy-url argument to just goproxy. Add a VERSION keyword argument, update docstring and adjust to have it used. (go-module-available-versions): New procedure. (%go.mod-require-directive-rx): Document regexp. (parse-go.mod): Harmonize the way dependencies are recorded to a list of lists rather than a list of pairs, as done for other importers. Rewrite to directly pass multiple values rather than a record object. Filter the replaced modules in a functional style. (go-module->guix-package): Add docstring. [version, pin-versions?]: New arguments. Rename the GOPROXY-URL argument to GOPROXY. Adjust to the new returned value of fetch-go.mod, which is a string. Fail when the provided version doesn't exist. Return a list dependencies and their versions when in pinned versions mode, else just the dependencies. (go-module-recursive-import)[version, pin-versions?]: New arguments. Honor the new arguments and guard against network errors. * guix/scripts/import/go.scm (%default-options): Register a default value for the goproxy argument. (show-help): Document that a version can be specified. Remove the --version argument and add a --pin-versions argument. (%options)[version]: Remove option. [pin-versions]: Add option. (guix-import-go): Adjust so the version provided from the module name is honored, along the new pin-versions? argument. * tests/go.scm: Adjust and add new tests.
2021-04-02gnu: Add node-lts.Jelle Licht
* gnu/packages/node.scm (node-lts): New variable. * guix/build-system/node.scm (default-node): Use it.
2021-04-02build-system: Rewrite node build system.Jelle Licht
* guix/build/node-build-system.scm: Rewrite it. * guix/build-system/node.scm: Adjust accordingly. * gnu/packages/node-xyz.scm (node-semver): Likewise. Co-authored-by: Timothy Sample <samplet@ngyro.com>
2021-03-19build-system/node: Remove unnecessary imports.Ludovic Courtès
* guix/build-system/node.scm: Remove unnecessary imports.
2021-03-17gnu: Use PACKAGE/INHERIT in more places.Mark H Weaver
* gnu/packages/algebra.scm (fftwf, fftw-openmpi), gnu/packages/audio.scm (ztoolkit-rsvg), gnu/packages/bioinformatics.scm (python2-dendropy), gnu/packages/boost.scm (boost-with-python2), gnu/packages/check.scm (python2-mock, python2-pytest-mock), gnu/packages/cups.scm (hplip-minimal), gnu/packages/freedesktop.scm (libinput-minimal), gnu/packages/gettext.scm (gnu-gettext), gnu/packages/glib.scm (python2-pygobject), gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi), gnu/packages/groff.scm (groff-minimal), gnu/packages/jami.scm (ffmpeg-jami), gnu/packages/libcanberra.scm (libcanberra/gtk+-2), gnu/packages/lirc.scm (python2-lirc), gnu/packages/llvm.scm (clang-runtime-3.5), gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple), gnu/packages/node.scm (libnode), gnu/packages/onc-rpc.scm (libtirpc/hurd), gnu/packages/python-compression.scm (bitshuffle-for-snappy), gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography) (python2-cryptography, python2-m2crypto), gnu/packages/python-web.scm (python2-html2text, python2-tornado) (python2-terminado, python2-ndg-httpsclient, python2-websocket-client) (python2-rauth, python2-url, python2-s3transfer), gnu/packages/python-xyz.scm (python2-psutil, python2-serpent) (python2-humanfriendly, python2-empy, python2-parse-type, python2-polib) (python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc) (python2-ipyparallel, python2-traitlets, python2-dbus) (python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse) (python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal) (python2-contextlib2, python2-promise, python2-anyjson, python2-amqp) (python2-kombu, python2-billiard, python2-celery, python2-whoosh) (python2-jellyfish, python-rope, ptpython-2, python2-binaryornot) (python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort) (python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash) (python2-cloudpickle, python2-reparser), gnu/packages/python.scm (python2-called-python), gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt) (python-qscintilla, python-pyqt+qscintilla), gnu/packages/scanner.scm (sane-backends), gnu/packages/sdl.scm (guile3.0-sdl2), gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc) (python-sepolgen, policycoreutils), gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack), gnu/packages/simulation.scm (fenics), gnu/packages/statistics.scm (python2-statsmodels), gnu/packages/texinfo.scm (info-reader), gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1), gnu/packages/xml.scm (xmlsec-nss), gnu/packages/xorg.scm (uim-gtk, uim-qt), guix/build-system/python.scm (package-with-explicit-python) (strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-14build-system/cargo: Propagate crates across builds.Efraim Flashner
* guix/build-system/cargo.scm (cargo-build): Add cargo-package-flags, install-source flags. * guix/build/cargo-build-system.scm (unpack-rust-crates, package): New procedures. (install): Also install crate sources. (%standard-phases): Add new phases. * doc/guix.texi (Packaging-guidelines)[Rust Crates]: Adjust to changes in the cargo-build-system.
2021-03-10import: Add Go importer.Katherine Cox-Buday
This patch adds a 'guix import go' command. * doc/guix.texi (Requirements): Mention Guile-Lib dependency. (Invoking guix import): Document 'guix import go'. * gnu/packages/package-management.scm (guix)[inputs, propagated-inputs]: Add GUILE-LIB. * guix/self.scm (compiled-guix)[guile-lib]: New variable. [dependencies]: Add it. (specification->package): Add "guile-lib". * guix/build-system/go.scm (go-version->git-ref): New procedure. * guix/import/go.scm, guix/scripts/import/go.scm, tests/go.scm: New files. * guix/scripts/import.scm: Declare subcommand guix import go * po/guix/POTFILES.in: Add 'guix/scripts/import/go.scm'. * Makefile.am (MODULES): Add 'guix/import/go.scm' and 'guix/scripts/import/go.scm'. (SCM_TESTS): Add 'tests/go.scm'. Co-Authored-By: Helio Machado <0x2b3bfa0@gmail.com> Co-Authored-By: Francois Joulaud <francois.joulaud@radiofrance.com> Co-Authored-By: Maxim Cournoyer <maxim.cournoyer@gmail.com> Co-Authored-by: Ludovic Courtès <ludo@gnu.org>
2021-02-07build-system: Add renpy-build-system.Leo Prikler
* guix/build/renpy-build-system.scm: New file. * guix/build-system/renpy.scm: New file. * Makefile.am (MODULES): Add them here. * doc/guix.texi (Build Systems): Document renpy-build-system.
2021-01-30build-system/julia: Don't rely on file name to set module name.nixo
* guix/build/julia-build-system.scm (project.toml->name): New procedure. (precompile, check, julia-build): Accept new key argument #:julia-package-name. * guix/build-system/julia.scm (julia-build): ... add it. * doc/guix.texi (julia-build-system): Update julia-package-name accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-30build-system/julia: Enable tests.nixo
* guix/build-system/julia.scm (julia-build): Set tests? default to #t. * guix/build/julia-build-system.scm (check): Respect tests? and fix julia invocation. (%standard-phases): Add check phase after install. * doc/guix.texi (julia-build-system): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-09import: cran: Update the Bioconductor version to 3.12.Roel Janssen
* guix/import/cran.scm (%bioconductor-version): Set to 3.12. * guix/build-system/r.scm (bioconductor-uri): Update to 3.12.
2020-12-03build-system: Add chicken-build-system.raingloom
* guix/build-system/chicken.scm: New file. * guix/build/chicken-build-system.scm: New file. * Makefile.am: Add them. * doc/guix.texi: Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-11Merge branch 'master' into stagingMarius Bakke
2020-11-10guix: ocaml: Add package-with-ocaml4.09.Julien Lepiller
* guix/build-system/ocaml.scm (package-with-ocaml4.09) (strip-ocaml4.09-variant): New variables. * gnu/packages/ocaml.scm (ocaml4.09-result, ocaml4.09-csexp) (ocaml4.09-dune-configurator, ocaml4.09-dune): New variables.
2020-10-19build-system/haskell: Disable parallel builds.zimoun
Fixes <https://bugs.gnu.org/43843>. * guix/build-system/haskell.scm (haskell-build): Turn off PARALLEL-BUILD? by default. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-10-05Merge branch 'master' into stagingGuillaume Le Vaillant
2020-09-15build-system: asdf: Read all .asd files if no #:asd-files specified.Guillaume Le Vaillant
* guix/build-system/asdf.scm (asdf-build): Remove the 'files' variable. * guix/build/asd-build-system.scm (find-asd-files): New variable. (build, check): Use it.
2020-09-14build-system: linux-module: Delete some huge items that we probably don't need.Danny Milosavljevic
* guix/build-system/linux-module.scm (make-linux-module-builder): Delete some huge items that we probably don't need.
2020-09-12build-system: asdf: Switch from bundles to regular compilation.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add 'XDG_CONFIG_DIRS'. * guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. * guix/build/asdf-build-system.scm (%object-prefix, %lisp-source-install-prefix): Update variables. (install): Update variable. (main-system-name): New variable. (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (configure): New variable. (build, check): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (create-asd-file, symlink-asd-files): Remove variables. (create-asdf-configuration): New variable. (cleanup-files): Update variable. (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases. Add 'configure' and 'create-asdf-configuration' phases. * guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency, inputs->asd-file-map, asdf-load-all, compile-system): Remove variables. (compile-systems): New variable. (system-dependencies, compiled-system, generate-system-definition): Remove variable. (test-system): Replace 'asd-file' parameter by 'asd-files'. (generate-executable-for-system): Update variable. (generate-dependency-links, make-asd-file, bundle-asd-file): Remove variables. (make-asdf-configuration): New variable. (build-program, build-image): Set 'XDG_CONFIG_DIRS'. (generate-executable): Update variable.
2020-08-13build-system/haskell: Add 'extra-directories' keyword.Timothy Sample
See <https://bugs.gnu.org/39309>. * guix/build-system/haskell.scm (lower): Include the transitive propagated inputs of 'extra-directories' inputs. (haskell-build): Add the 'extra-directories' keyword and pass it through to the builder. * guix/build/haskell-build-system.scm (configure): Use it to select which inputs get passed via 'extra-include-dirs' and 'extra-lib-dirs' to Cabal. * gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-hmatrix, ghc-hmatrix-gsl, ghc-hslua, ghc-iwlib, ghc-libyaml, ghc-ncurses, ghc-openglraw, ghc-x11, ghc-x11-xft, ghc-zlib): Set 'extra-directories'. * gnu/packages/haskell-crypto.scm (ghc-digest, ghc-hsopenssl): Likewise.
2020-08-12build-system/haskell: Add default output "static".Ricardo Wurmus
* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the "static" output in the common case. (haskell-build): Set the default value for the OUTPUTS keyword to include the "static" output. * guix/build/haskell-build-system.scm (install): Move static libraries to the "static" output if it exists.
2020-08-12build-system/haskell: Support parallel builds.Ricardo Wurmus
* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD? and pass it on to the builder. * guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD? and pass the number of parallel jobs to GHC.
2020-08-09build-system/emacs: Allow usage of #:parallel-tests? keyMorgan Smith
* guix/build-system/emacs.scm (emacs-build): Pass parallel-tests? to builder. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-07-17build-system/maven: Make default-maven-plugins a procedure.Christopher Baines
This allows compiling the module without the (gnu packages maven) module being available. * guix/build-system/maven.scm (%default-maven-plugins): Rename to default-maven-plugins, and convert to a procedure. * doc/guix.texi (maven-build-system): Update.
2020-07-17guix: Add maven-build-system.Julien Lepiller
* guix/build-system/maven.scm: New file. * guix/build/maven-build-system.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document the maven build system.
2020-07-17guix: java-utils: Add Maven-related phases.Julien Lepiller
* guix/build/maven/java.scm: New file. * guix/build/maven/plugin.scm: New file. * guix/build/maven/pom.scm: New file. * Makefile.am (MODULES): Add them. * guix/build-system/ant.scm (%ant-build-system-modules): Add them to the build side. * guix/build/java-utils.scm (generate-plugin.xml, install-pom-file) (install-from-pom): New procedures.
2020-06-30build-system/r: bioconductor-uri: Fix archive URL.zimoun
* guix/build-system/r.scm (bioconductor-uri): Fix archive URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-20build-system/gnu: Cross builds properly handle #:allowed-references & co.Ludovic Courtès
Fixes <https://bugs.gnu.org/41775>. * guix/build-system/gnu.scm (gnu-cross-build)[canonicalize-reference]: Pass TARGET and SYSTEM to 'package-cross-derivation'.
2020-06-17build-system/gnu: Simplify 'dist-package'.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package): Use default keyword arguments in 'substitute-keyword-arguments'.
2020-06-17build-system/gnu: Adjust 'dist-package' to current 'autoconf-wrapper' API.Ludovic Courtès
This is a followup to 464f5447396fcec9b43f7eab71d5d42b522a157f. * guix/build-system/gnu.scm (dist-package): Do not call 'autoconf-wrapper'.
2020-06-16build-system: cmake: Add substitutable keyword.Efraim Flashner
* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add substitutable keyword.
2020-06-13Merge branch 'staging'Marius Bakke
2020-06-13guix: Update to Bioconductor 3.11.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Use new URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.11.
2020-06-06Merge branch 'master' into stagingMarius Bakke
2020-06-02build-system: linux-module: Allow passing #:make-flags argument.Danny Milosavljevic
* guix/build-system/linux-module.scm (linux-module-build): Add #:make-flags. (linux-module-build-cross): Add #:make-flags. * guix/build/linux-module-build-system.scm (install): Pass make-flags. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-26Merge branch 'master' into stagingMarius Bakke
2020-05-26Merge branch 'master' into stagingMarius Bakke
2020-05-21build: asdf-build-system: Use SBCL source in CL packages.Pierre Neidhardt
* guix/build/asdf-build-system.scm (copy-files-to-output): Don't attempt to reset timestamps on files without write access. (install): When parent SBCL package is in the inputs, use its source. This way we get possibly patched sources in CL packages as well (e.g. for FFI). This is also useful for sources that generate files on load-op, like cl-unicode. * guix/build-system/asdf.scm (package-with-build-system): Forward the SBCL parent as a native input so that it can be used in the above install phase.
2020-05-18build-system/guile: Expose #:scheme-file-regexp.Alex Sassmannshausen
* guix/build-system/guile.scm (%scheme-file-regexp): New variable. (guile-build): Accept #:scheme-file-regexp and pass it on to builder.
2020-04-29Merge branch 'master' into stagingJakub Kądziołka
2020-04-08build-system/go: Allow providing additional build flagsJakub Kądziołka
* guix/build-system/go.scm (build-flags): New argument. * guix/build/go-build-system.scm (build): Use apply to pass the additional arguments to invoke.
2020-03-30Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/guile.scm gnu/packages/linux.scm gnu/packages/package-management.scm gnu/packages/pulseaudio.scm gnu/packages/web.scm
2020-03-29build-system/gnu: Optimize the package graph.Ludovic Courtès
With this change, the output of: guix graph -e '(@@ (gnu packages commencement) coreutils-final)' |grep 'label = ' | wc -l drops from 76 nodes to 68 nodes, and the "add-data-to-store-cache" hit rate for: guix build libreoffice -d --no-grafts drops from 3.9% to 2.6%. * guix/build-system/gnu.scm (package-with-explicit-inputs*)[cut?]: Adjust condition to exclude packages with build systems other than GNU-BUILD-SYSTEM, such as 'ld-wrapper-boot3'.
2020-03-29Merge branch 'master' into stagingJakub Kądziołka
2020-03-27Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/packages/icu4c.scm gnu/packages/man.scm gnu/packages/python-xyz.scm guix/scripts/environment.scm guix/scripts/pack.scm guix/scripts/package.scm guix/scripts/pull.scm guix/store.scm
2020-03-23cargo-build-system: Accept a #:features argumentJakub Kądziołka
* guix/build/cargo-build-system.scm (build, install): Pass the features to cargo. (check): Remove indirection layer for consistency with build and install. * guix/build-system/cargo.scm (cargo-build): New argument; pass it into the builder. * gnu/packages/rust-apps.scm (ripgrep): Use the new argument instead of a custom phase.
2020-03-22build-system: linux-module: Fix cross compilation.Mathieu Othacehe
* guix/build-system/linux-module.scm (default-kmod, default-gcc): Delete procedures. (system->arch): New procedure. (make-linux-module-builder)[native-inputs]: Move linux... [inputs]: ...to here. (linux-module-build-cross): New procedure. (linux-module-build): Add TARGET. Pass TARGET and ARCH to build side. (lower): Allow cross-compilation. Move "linux" and "linux-module-builder" to host-inputs. Add target-inputs. Call linux-module-build-cross if TARGET is set, linux-module-build otherwise. * guix/build/linux-module-build-system.scm (configure): Add ARCH argument. (linux-module-build): Adjust comment. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-18Merge branch 'master' into core-updatesMarius Bakke
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