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2019-09-16Revert "build-system/r: Use %bioconductor-version."Efraim Flashner
This reverts commit 41ca406fa54e69f61c55b11ffe5cf465192a907c. This commit breaks 'guix pull', as reported by Hao Chen.
2019-09-16build-system/r: Use %bioconductor-version.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Use %bioconductor-version instead of hard-coding the version string.
2019-09-05build-system/julia: Avoid module cycles.Marius Bakke
* guix/build-system/julia.scm: Remove unused imports. (lower)[julia]: Default to (DEFAULT-JULIA).
2019-09-04build-system/julia: Fix syntax error.Ricardo Wurmus
* guix/build-system/julia.scm: Fix invalid module reference.
2019-09-04build: Add julia-build-system.nixo
* guix/build/julia-build-system.scm: New file. * guix/build-system/julia.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document julia-build-system. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04import: crate: Separate crates.io API from actual conversion.Ludovic Courtès
This provides a clean separation between bindings to the https://crates.io/api/v1 API and actual conversion to Guix package sexps. As a side-effect, it fixes things like "guix import blake2-rfc", "guix refresh -t crates", etc. * guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>): New record types. (lookup-crate, crate-version-dependencies): New procedures. (crate-fetch): Remove. (crate->guix-package): Rewrite to use the new API. (latest-release): Likewise. * guix/build-system/cargo.scm (%crate-base-url): New variable. * tests/crate.scm (test-crate): Update accordingly. fixlet
2019-08-16build-system/r: bioconductor-uri: Take optional package type.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to return annotation or experiment URLs.
2019-07-23build-system/texlive: Add texlive-origin.Ricardo Wurmus
* guix/build-system/texlive.scm (texlive-origin): New procedure.
2019-07-16build/cargo-build-system: Use bundled json instead of guile-json.Robert Vollmert
* guix/build/cargo-build-system.scm: Use (gnu build json) instead of (json parser). * guix/build-system/cargo.scm: Import (gnu build json) instead of (json parser). Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-14Revert "guix: node-build-system: Use guile-json instead of a custom parser."Julien Lepiller
The effect of this change was to import the (json parser) from the host side into the build side. The solution here would be to do the equivalent of ‘with-extensions’ for gexps. Since we don't use gexps for build systems just yet, revert this for now. This reverts commit 8eb0ba532ebbebef23180e666e0607ea735f9c1a.
2019-07-14guix: node-build-system: Use guile-json instead of a custom parser.Julien Lepiller
* guix/build/json.scm: Remove file. * Makefile.am: Remove it. * guix/build/node-build-system.scm: Use (json parser) instead of (guix build json). * guix/build-system/node.scm: Idem.
2019-07-14build: Add node-build-system.Jelle Licht
* guix/build/node-build-system.scm: New file. * guix/build-system/node.scm: New file. * guix/build/json.scm: New file. * doc/guix.texi: Document it. * Makefile.am: Added new files. Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
2019-07-02import: pypi: Update the host URI.Maxim Cournoyer
* guix/build-system/python.scm (pypi-uri): Update the host URI to "files.pythonhosted.org".
2019-06-11build-system/cargo: Don't copy source as an output.Ivan Petkov
* guix/build-system/cargo.scm: (cargo-build)[build-expression->derivation]: Don't add "src" output. * guix/build/cargo-build-system.scm: (install-source): Delete it. (%standard-phases): Delete 'install-source. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11build-system/cargo: Expand transitive crate sources.Ivan Petkov
* guix/build/cargo: (package-cargo-inputs): Add it. (package-cargo-development-inputs): Add it. (crate-closure): Add it. (expand-crate-sources): Add it. (lower)[private-keywords]: Add #:cargo-inputs and [bag]: Use expand-crate-sources to augment build-inputs. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-02build-system/guile: Add #:not-compiled-file-regexp.Ludovic Courtès
* guix/build/guile-build-system.scm (build): Add #:not-compiled-file-regexp and honor it. * guix/build-system/guile.scm (guile-build): Likewise. (guile-cross-build): Likewise.
2019-05-06guix: Update to Bioconductor 3.9.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9.
2019-04-25gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependentJulien Lepiller
packages. This fixes <https://bugs.gnu.org/27462>. * gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir) (ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit) (ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith) (ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext) (ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result) (ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv) (ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring) (ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl) (ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath) (ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar) (ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64) (ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis) (ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib) (ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver) (ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv) (ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare) (ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib) (ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv) (ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate) (ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value) (ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail) (ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message) (ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re) (ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel) (ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core) (ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async) (ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp) (ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi) (ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables. * guix/build-system/ocaml.scm (default-ocaml4.02) (default-ocaml4.02-findlib, package-with-ocaml4.02) (strip-ocaml4.02-variant): Remove variables.
2019-04-12build-system/linux-module: Support module source versioning.Danny Milosavljevic
* guix/build-system/linux-module.scm (make-linux-module-builder) [native-inputs]: Add linux. [arguments]<#:phases>[install]: Install "System.map" and "Module.symvers". * guix/build/linux-module-build-system.scm (configure): Delete procedure. (%standard-phases): Delete "configure" phase.
2019-04-11Add (guix build-system linux-module).Danny Milosavljevic
* guix/build/linux-module-build-system.scm: New file. * guix/build-system/linux-module.scm: New file. * doc/guix.texi (Build Systems): Document it. * Makefile.am (MODULES): Add them.
2019-04-09build-system/cargo: refactor phases to successfully buildIvan Petkov
* guix/build-system/cargo.scm (%cargo-build-system-modules): Add (json parser). (cargo-build): [vendor-dir]: Define flag and pass it to builder code. [cargo-test-flags]: Likewise. [skip-build?]: Likewise. * guix/build/cargo-build/system.scm (#:use-module): use (json parser). (package-name->crate-name): Delete it. (manifest-targets): Add it. (has-executable-target?): Add it. (configure): Add #:vendor-dir name and use it. Don't touch Cargo.toml. Don't symlink to duplicate inputs. Remove useless registry line from cargo config. Define RUSTFLAGS to lift lint restrictions. (build): Add #:skip-build? flag and use it. (check): Likewise. Add #:cargo-test-flags and pass it to cargo. (install): Factor source logic to install-source. Define #:skip-build? flag and use it. Only install if executable targets are present. (install-source): Copy entire crate directory not just src. [generate-checksums] pass dummy file for unused second argument. (%standard-phases): Add install-source phase. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-03-23guix: dune-build-system: Add a package parameter.Julien Lepiller
* guix/build-system/dune.scm: Add a package parameter. * guix/build/dune.scm (build, test, install): Use it. * doc/guix.texi: Document it.
2019-03-23build: Add rakudo-build-system.Efraim Flashner
* guix/build-system/rakudo.scm, guix/build/rakudo-build-system.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build System): Document it.
2019-03-21build-system/meson: Add #:allowed-references and #:disallowed-references.Marius Bakke
* guix/build-system/meson.scm (meson-build): Add support for #:allowed-references and #:disallowed-references.
2019-03-15build-system/glib-or-gtk: Support #:disallowed-references.Ludovic Courtès
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Add #:disallowed-references and honor it.
2019-03-14build-system/go: Build with a filesystem union of Go dependencies.Leo Famulari
This basically changes (guix build-system go) so that instead of looking up its dependencies in a list of directories in $GOPATH, all the Go dependencies are symlinked into a single directory. Fixes <https://bugs.gnu.org/33620>. * guix/build/go-build-system.scm (setup-go-environment): New variable. (setup-environment, install-source): Remove variables. (unpack): Unpack the source relative to $GOPATH. (install): Do not install the compiled objects in the 'pkg' directory. Install the source code in this phase, and only install the source of the package named by IMPORT-PATH. * doc/guix.texi (Build Systems): Adjust accordingly. * gnu/packages/docker.scm (docker): Import (guix build union) on the build side and adjust to build phase name changes in (guix build-system go). * gnu/packages/shellutils.scm (direnv): Likewise. * gnu/packages/databases.scm (mongo-tools)[arguments]: Set '#:install-source #f'. * gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts' phase after the 'install' phase.
2019-03-01gnu: rust: Factor out "cargo-utils" from "cargo-build-system".Ivan Petkov
* guix/build/cargo-utils.scm: New file. * Makefile.am (MODULES): Add it. * guix/build-system/cargo.scm (%cargo-utils-modules): New variable. (%cargo-build-system-modules): Use it. * guix/build/cargo-build-system.scm (file-sha256, generate-checksums): Move from here... * guix/build/cargo-utils.scm: ...to here. * gnu/packages/rust.scm (rust-1.19.0)[arguments]<#:imported-modules>: Use %cargo-utils-modules. <#:phases>[patch-cargo-checksums]: Use (guix build cargo-utils). * gnu/packages/gnuzilla.scm (icecat): [arguments]<#:imported-modules>: Use %cargo-utils-modules. <#phases>[patch-cargo-checksums]: import (guix build cargo-utils). Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-01-15guix: scons: Fix module reference.Ricardo Wurmus
* guix/build-system/scons.scm (default-scons): Find "scons" package in (gnu packages python-xyz) instead of (gnu packages python).
2019-01-10gnu: Update texlive packages.Ricardo Wurmus
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to texlive-2018.2, revision 49435. * gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data, texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname, texlive-fonts-cm, texlive-tex-plain, texlive-latex-base, texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls, texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox, texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois, texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar, texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip, texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script, texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update hashes. (texlive-latex-fontspec)[arguments]: Remove custom build target. (texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error". (texlive-latex-xkeyval): New variable. (texlive-latex-pstool)[source]: Fetch from new location. [build-system]: Use trivial-build-system. [arguments]: Write simple builder. [propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and texlive-latex-xkeyval. [synopsis]: Fix typo.
2019-01-09build-system/asdf: 'package-with-build-system' accesses inputs lazily.Ludovic Courtès
Fixes a bug whereby we would, at the top-level (while evaluation lisp.scm package definitions), attempt to access package inputs. Because of circular dependencies, this could lead to unbound variables as reported by Arun Isaac <arunisaac@systemreboot.net> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33801#56>. * guix/build-system/asdf.scm (package-with-build-system)[transform] (new-propagated-inputs): Turn into a procedure. Adjust user accordingly.
2018-12-18build: Add dune-build-system.Julien Lepiller
* guix/build/dune-build-system.scm, guix/build-system/dune.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document dune-build-system. * guix/build-system/ocaml.scm (lower, default-findlib, default-ocaml): Export them. (package-with-explicit-ocaml): Also transform packages built with dune-build-system.
2018-11-24Merge branch 'master' into core-updatesMarius Bakke
2018-11-24build-system: clojure-build-system: Fix %default-clojure location.Jelle Licht
* guix/build-system/clojure.scm (%default-clojure): Use new package path.
2018-11-20Merge branch 'master' into core-updatesMarius Bakke
2018-11-19build-system: Add 'clojure-build-system'.Alex Vong
* guix/build-system/clojure.scm, guix/build/clojure-build-system.scm: New files. * guix/build/clojure-utils.scm (@*, @@*): New macros. (%source-dirs, %test-dirs, %compile-dir, %main-class, %omit-source?, %aot-include, %aot-exclude, %tests?, %test-include, %test-exclude, %clojure-regex): New variables. (package-name->jar-names, canonicalize-relative-path, find-files*, file-sans-extension, relative-path->clojure-lib-string, find-clojure-libs, compiled-from?, include-list\exclude-list, eval-with-clojure, create-jar): New procedures. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document 'clojure-build-system'.
2018-11-18gnu: ocaml: Update to 4.7.0.Julien Lepiller
Update ocaml to the latest version and fixes dependent packages by updating them or by adding new inputs, such as ocaml-num and ocamlbuild, that were removed from the core ocaml package. Rename packages that cannot be built with the new compiler with an ocaml4.02 prefix. Add ocaml4.02 dependencies. * gnu/packages/ocaml.scm (ocaml): Update to 4.7.0. (ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir) (ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip) (ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest) (ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree) (ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned) (ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult) (ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner) (ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools) (ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log) (ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos) (ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf) (ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake) (ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis) (ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq) (ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format) (ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi) (ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages. (opam): Update to 2.0.0. (camlp4): Update to 4.07+1. (camlp5): Update to 7.06. (hevea): Update to 2.32. (coq)[inputs]: Add ocaml-num. (emacs-tuareg): Update to 2.2.0. (ocaml-menhir)[native-inputs]: Add ocamlbuild. (ocaml-lablgtk): Update to 2.18.6. (unison)[inputs]: Use ocaml-4.02. (ocaml-findlib): Update to 1.8.0. (ocaml-ounit)[native-inputs]: Add ocamlbuild. (ocamlmod): Update to 0.0.9. (ocaml-frontc)[arguments]: Use ocaml-4.02. (ocaml-qcheck)[native-inputs]: Add ocamlbuild. (ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild. (ocaml-stringext)[native-inputs]: Add ocamlbuild. (ocaml-bisect): Update to 1.3.1. (ocaml4.01-bisect): Downgrade to 1.3. (ocaml-bitstring): Update to 3.1.0. (ocaml-topkg)[native-inputs]: Add ocamlbuild. (ocaml-rresult)[native-inputs]: Add ocamlbuild. (ocaml-sqlite3)[native-inputs]: Add ocamlbuild. (ocaml-csv)[native-inputs]: Add ocamlbuild. (ocaml-mtime)[native-inputs]: Add ocamlbuild. (ocaml-cmdliner)[native-inputs]: Add ocamlbuild. (ocaml-fmt)[native-inputs]: Add ocamlbuild. (ocaml-astring)[native-inputs]: Add ocamlbuild. (ocaml-alcotest)[native-inputs]: Add ocamlbuild. (ocaml-ppx-tools)[native-inputs]: Add ocamlbuild. (ocaml-react)[native-inputs]: Add ocamlbuild. (ocaml-ssl)[arguments]: Return #t in phases. (ocaml-lwt): Update to 4.1.0. (ocaml-logs)[native-inputs]: Add ocamlbuild. (ocaml-fpath)[native-inputs]: Add ocamlbuild. (ocaml-bos)[native-inputs]: Add ocamlbuild. (ocaml-xmlm): Update to 1.3.0. (ocaml-ulex): Update to 1.2.0. (ocaml-uchar)[native-inputs]: Add ocamlbuild. (ocaml-uutf): Update to 1.0.1. (ocaml-jsonm): Update to 1.0.1. (ocaml-ocurl): Update to 0.8.2. (ocaml-base64)[native-inputs]: Add ocamlbuild. (ocamlify)[native-inputs]: Use ocaml-4.02. (omake): Update to 0.10.3. (ocaml-batteries): Update to 2.9.0. (ocaml-pcre)[native-inputs]: Add ocamlbuild. (ocaml-expect): Update 0.0.6. (ocaml4.02-fileutils): Update to 0.5.3. (ocaml-oasis): Update 0.4.11. (ocaml-js-build-tools)[native-inputs]: Add ocamlbuild. (ocaml-bin-prot): Rename to ocaml4.02-bin-prot. (ocaml-fieldslib): Rename to ocaml4.02-fieldslib. (ocaml-ppx-core): Rename to ocaml4.02-ppx-core. (ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp. (ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver. (ocaml-cppo): Update to 1.6.5. (ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving. (ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv. (ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test. (ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench. (ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare. (ocaml-sexplib): Rename to ocaml4.02-sexplib. (ocaml-typerep): Rename to ocaml4.02-typerep. (ocaml-variantslib): Rename to ocaml4.02-variantslib. (ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv. (ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv. (ocaml-ppx-here): Rename to ocaml4.02-ppx-here. (ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert. (ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate. (ocaml-ppx-let): Rename to ocaml4.02-ppx-let. (ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv. (ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value. (ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang. (ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot. (ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail. (ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf. (ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message. (ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv. (ocaml-re): Update to 1.8.0. (ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect. (ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane. (ocaml-core-kernel): Rename to ocaml4.02-core-kernel. (ocaml-async-kernel): Rename to ocaml4.02-async-kernel. (ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel. (ocaml-core): Rename to ocaml4.02-core. (ocaml-async-unix): Rename to ocaml4.02-async-unix. (ocaml-async-extra): Rename to ocaml4.02-async-extra. (ocaml-async): Rename to ocaml4.02-async. (ocaml-ocplib-endian)[native-inputs]: Update to 1.0. (ocaml-cstruct): Rename to ocaml4.02-cstruct. (ocaml-hex): Rename to ocaml4.02-hex. (ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm. (ocaml-uri): Rename to ocaml4.02-uri. (optcomp): Use ocaml-4.02. (ocaml-piqilib): Update to 0.6.14. (ocaml-uuidm)[native-inputs]: Add ocamlbuild. (ocaml-graph): Update to 1.8.8. (ocaml-piqi): Update to 0.7.6. (bap): Update to 1.3.0. (ocaml-camomile): Update to 1.0.1. (ocaml-jbuilder): Use ocaml-4.02. (ocaml-lambda-term): Update to 1.13. (ocaml-utop): Update to 2.2.0. (ocaml-integers)[native-inputs]: Add ocamlbuild. (ocaml-ctypes): Update to 0.14.0. (ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild. (ocaml-tsdl)[native-inputs]: Add ocamlbuild. * gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02. * gnu/packages/maths.scm (cubicle): Update to 1.1.2. * gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch: Update patch. * guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib) (package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
2018-11-07Merge branch 'master' into core-updatesMarius Bakke
2018-11-06guix: Update to Bioconductor 3.8.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-version): Update to 3.8. * guix/build-system/r.scm (bioconductor-uri): Update archive URL.
2018-10-21Merge branch 'master' into core-updatesMarius Bakke
2018-10-18gnu: Use pypi.org.Leo Famulari
<pypi.io> redirects to <pypi.org>. * guix/build-system/python.scm (pypi-uri): Replace pypi.io with pypi.org. * guix/import/pypi.scm (pypi-url?): Likewise. * tests/pypi.scm: Likewise.
2018-10-07Merge branch 'master' into core-updatesLeo Famulari
2018-10-07build-system/glib-or-gtk: Build 'in-source' by default.Leo Famulari
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to 'out-of-source? #f'. * gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?' setting. * gnu/packages/libreoffice.scm (libreoffice): Likewise.
2018-10-05Merge branch 'master' into core-updatesMarius Bakke
2018-10-01build-system: haskell: Add #:cabal-revision argument.Timothy Sample
Add a #:cabal-revision argument for specifying which Cabal file revision from Hackage should be used. * guix/build-system/haskell.scm (source-url->revision-url): New function. (lower): Accept a cabal-revision keyword argument, convert it to an origin record, and add it to the resulting bag's host-inputs. (haskell-build): Pass the cabal-revision input to the builder as an argument. * guix/build/haskell-build-system.scm (patch-cabal-file): New phase. (%standard-phases): Add it.
2018-09-13Merge branch 'master' into core-updatesLeo Famulari
2018-09-10Adjust all users of (gnu packages ldc) to use (gnu packages dlang).Leo Famulari
This is a followup to commit 98d6543f86d01486c2f6e808eedd97c601ba3e7a. * gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust accordingly.
2018-08-25Merge branch 'staging' into core-updatesMarius Bakke
2018-08-22build-system/meson: Strip RUNPATH and remove PatchELF traces.Marius Bakke
* guix/build-system/meson.scm (%meson-build-system-modules): Don't import (guix build rpath). * guix/build/meson-build-system.scm (fix-runpath): Rename to ... (shrink-runpath): ... this. Update docstring. Remove AUGMENT-RPATH calls and related code. (%standard-phases): Add 'shrink-runpath'.
2018-08-21build-system/asdf: Fix typo in "dependency".Pierre Neidhardt
* guix/build-system/asdf.scm (default-lisp): Fix typo in "dependency".
2018-07-28Merge branch 'master' into stagingMarius Bakke
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