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2017-12-20build-system/gnu: Add the "static" output of libc in cross environments....Fixes a regression whereby the host libc.a would be missing when cross-compiling. This is a followup to commit 6dff905e51202bbdebbad8811b6509584d12a796. * guix/build-system/gnu.scm (standard-cross-packages): Add the "cross-libc:static". Ludovic Courtès
2017-12-19Merge branch 'master' into core-updatesMarius Bakke
2017-12-10build-system/asdf: Use 'mlambda'....* guix/build-system/asdf.scm (package-with-build-system): Use 'mlambda' instead of 'memoize'. Ludovic Courtès
2017-12-05Merge branch 'master' into core-updatesMarius Bakke
2017-11-30build-system: Add scons-build-system....* guix/build-system/scons.scm: New file. * guix/build/scons-build-system.scm: New file. * Makefile.am (MODULES): Register them. * doc/guix.texi (Build Systems): Add scons-build-system. Arun Isaac
2017-11-19Merge branch 'master' into core-updatesMarius Bakke
2017-11-17build-system/go: Don't let Go executables refer to the Go compiler....* guix/build/go-build-system.scm (remove-store-reference, remove-go-references): New procedures. (%standard-phases): Add 'remove-go-references' phase. * guix/build-system/go.scm (go-build): Add allow-go-reference? key. Leo Famulari
2017-11-08build-system/gnu: Add 'install-license-files' phase....Suggested by Dave Love <fx@gnu.org>. * guix/build-system/gnu.scm (%license-file-regexp): New variable. (gnu-build): Add #:license-file-regexp and use it. (gnu-cross-build): Likewise. * guix/build/gnu-build-system.scm (%license-file-regexp): New variable. (install-license-files): New procedure. (%standard-phases): Add it. Ludovic Courtès
2017-11-07guix: Add archive support for bioconductor-uri....* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL. * guix/import/cran.scm (latest-bioconductor-release, fetch-description): Adjust because bioconductor-uri now returns a list. Ricardo Wurmus
2017-10-24build-system/go: Parameterize installing the source code....* guix/build-system/go.scm (go-build): Add install-source? key. * guix/build/go-build-system.scm (install-source): Check if install-source? is true. Leo Famulari
2017-10-21Use HTTPS for bioconductor.org....* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise. Tobias Geerinckx-Rice
2017-10-12build: Add the Go build system....* guix/build-system/go.scm, guix/build/go-build-system.scm: New files. * Makefile.am (MODULES): Add new files. * doc/guix.texi (Build Systems): Document the go-build-system. Leo Famulari
2017-10-03guix: ant-build-system: Add #:test-include and #:test-exclude arguments....* guix/build-system/ant.scm: Add #:test-include and #:test-exclude arguments. * guix/build/ant-build-system.scm: Generate test list from arguments. * doc/guix.texi (Build Systems): Document it. Julien Lepiller
2017-10-03guix: ant-build-system: Add main-class support....* guix/build-system/ant.scm: New #:main-class argument * guix/build/ant-build-system.scm: Generate a manifest file with additional properties. * doc/guix.texi (Build Systems): Document it. Julien Lepiller
2017-09-26build-system: meson: Fix typo in variable name....* guix/build-system/meson.scm (lower): fix typo in glib-or-gtk?. Mohammed Sadiq
2017-09-16build-system: Add 'meson-build-system'....* Makefile.am (MODULES): Add 'guix/build-system/meson.scm' and 'guix/build/meson-build-system.scm'. * guix/build-system/meson.scm: New file. * guix/build/meson-build-system.scm: New file. * doc/guix.texi (Build Systems): Add 'meson-build-system'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Peter Mikkelsen
2017-08-06Merge branch 'master' into core-updatesMark H Weaver
2017-08-04build: Add minify build system....* guix/build-system/minify.scm: New file. * guix/build/minify-build-system: New file. * Makefile.am (MODULES): Add new files. * doc/guix.texi (Build Systems): Document minify-build-system. Ricardo Wurmus
2017-07-10Merge branch 'master' into core-updatesLeo Famulari
2017-07-09build-system: texlive: Build union in configure phase....This allows us to use texmf.cnf instead of having to set all required environment variables manually. * guix/build/texlive-build-system.scm (configure): New procedure. (build): Simplify. (%standard-phases): Add configure phase. * guix/build-system/texlive.scm (texlive-build): Include (guix build union) in modules. (%texlive-build-system-modules): Likewise. Ricardo Wurmus
2017-06-26Merge branch 'master' into core-updatesMark H Weaver
2017-06-20gnu: Move contents of zip module into compression module....* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to... * gnu/packages/compression.scm: ...here. * gnu/packages/zip.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file. * po/packages/POTFILES.in: Unregister deleted file. * gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression, docbook, documentation, fonts, fpga, game-development, games, gl, gnome, gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice, markup, maths, mc, monitoring, music, php, pretty-print, python, scheme, smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml, zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm: Adapt module import. Arun Isaac
2017-06-20Merge branch 'master' into core-updatesMark H Weaver
2017-06-19build-system/texlive: Update to texlive-2017.1, revision 44591....* guix/build-system/texlive.scm (%texlive-tag): Change to texlive-2017.1. (%texlive-revision): Change to 44591. Ricardo Wurmus
2017-06-18Merge branch 'master' into core-updatesMark H Weaver
2017-06-15build-system: Add 'texlive-build-system'....* guix/build-system/texlive.scm: New file. * guix/build/texlive-build-system.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document it. * gnu/packages/tex.scm (%texlive-tag, %texlive-revision): Remove variables. (texlife-ref): Remove procedure. Ricardo Wurmus
2017-06-10Merge branch 'master' into core-updatesMarius Bakke
2017-06-08build-system: emacs: Factorize include/exclude default arguments....The `install' phase of the emacs-build-system contained default arguments duplicated from the host side `emacs-build' procedure. This change factorizes them so that: 1. They are not duplicated. 2. They can be reused and extended easily when defining emacs packages. * guix/build/emacs-build-system.scm (%default-include, %default-exclude): New variables. (install): Use %default-include and %default-exclude as default arguments. * guix/build-system/emacs.scm: Use and re-export %default-include, %default-exclude from (guix build emacs-build-system). (emacs-build): Use %default-include and %default-exclude as default arguments. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2017-06-03Merge branch 'master' into core-updates... Conflicts: gnu/packages/image.scm (incorporated libtiff graft) Marius Bakke
2017-05-30build-system/cmake: Add support for cross compilation....Fixes <https://bugs.gnu.org/26897>. * guix/build-system/gnu.scm: Export standard-cross-packages. * guix/build-system/cmake.scm (cmake-cross-build): New procedure. (lower): Add support for cross-builds. * guix/build/cmake-build-system.scm (configure): Handle "target" argument. Ricardo Wurmus
2017-05-28build-system: Add 'font-build-system'....* Makefile.am (MODULES): Add 'guix/build-system/font.scm' and 'guix/build/font-build-system.scm'. * guix/build-system/font.scm: New file. * guix/build/font-build-system.scm: New file. * doc/guix.texi (Build Systems): Add 'font-build-system'. Arun Isaac
2017-05-25build-system: gnu: Fix cross-gcc call....This is a follow-up to 7b3318e34f4e2743254a88b908859901db960e9a. * guix/build-system/gnu.scm (standard-cross-packages): Use keyword arguments in cross-gcc call. Ricardo Wurmus
2017-05-23build-system: emacs: Install only a subset of files....* guix/build/emacs-build-system.scm (install): Install files matching #:include while excluding files matching #:exclude. * guix/build-system/emacs.scm (emacs-build): Add keyword arguments #:include and #:exclude. Arun Isaac
2017-05-16build-system/asdf: Handle tests defined in external systems....* guix/build-system/asdf.scm (asdf-build): Add a #:test-asd-file argument. [builder]: Pass it to the build system. (package-with-build-system)[transform]: Strip it from source systems' arguments. * guix/build/asdf-build-system.scm (check): Pass the fully qualified path to it on to the test-system procedure. * guix/build/lisp-utils.scm (test-system): Load the file, or otherwise one of the often used names for it, before running the tests. Adjust the docstring accordingly. Andy Patterson
2017-05-16build-system/asdf: Always pre-load the system's definition file....* guix/build-system/asdf.scm (asdf-build)[builder]: Pass a default `#:asd-file' argument to the build procedure, using the system's name. * guix/build/asdf-build-system.scm (build, check): Adjust to assume that `asd-file' will always be a string. * guix/build/lisp-utils.scm (compile-system, system-dependencies) (test-system): Likewise. Andy Patterson
2017-05-16build-system/asdf: Pass the system name as an argument to the builder....* guix/build-system/asdf.scm (asdf-build): Use the user-defined system name, or calculate it from the package's full name. [builder]: Pass the value along to the build procedure. (package-with-build-system): Remove #:asd-system-name from source packages' arguments. * guix/build/asdf-build-system.scm: Adjust accordingly. * guix/build/lisp-utils.scm (remove-lisp-from-name): Delete variable. Andy Patterson
2017-05-16build-system/asdf: Parameterize the lisp type and implementation globally....* guix/build-system/asdf.scm (asdf-build)[builder]: Parameterize %lisp-type and %lisp before invoking the build procedure. Don't pass #:lisp-type as an argument to said procedure. * guix/build/asdf-build-system.scm: Adjust accordingly. (source-install-prefix): Rename to %lisp-source-install-prefix. * guix/build/lisp-utils.scm: Adjust accordingly. (%lisp-type): New parameter. (bundle-install-prefix): Rename to %bundle-install-prefix. * gnu/packages/lisp.scm: Adjust accordingly. Andy Patterson
2017-05-16build-system/asdf: Make #:lisp a package argument....* guix/build-system/asdf.scm (lower): Change argument name to `lisp-type'. (asdf-build): Change argument name to `lisp-type'. Remove `lisp' as an argument to the returned procedure. Change the argument passed to build phases to `lisp-type'. * guix/build/asdf-build-system.scm (copy-source, build, check) (create-asd-file, symlink-asd-files, cleanup-files, strip): Respect `lisp-type` argument. * gnu/packages/lisp.scm (sbcl-stumpwm, sbcl-stumpwm+slynk): Likewise. Andy Patterson
2017-05-16build-system/asdf: Don't rename inputs....* guix/build-system/asdf.scm (package-with-build-system)[transform]: Use updated `new-inputs' procedure for inputs and native-inputs. <rewrite>: Don't rename inputs. <new-propagated-inputs>: Draw from package-inputs and package-native-inputs for source packages. Use the original package's propagated-inputs otherwise. <new-inputs>: Convert into a function to be used to transform inputs and native-inputs. * gnu/packages/lisp.scm (sbcl-fiveam, sbcl-bordeaux-threads) (sbcl-flexi-streams, sbcl-cl-ppcre, sbcl-stumpwm, sbcl-slynk-arglists) (sbcl-slynk-fancy-inspector): Don't prefix input names. Andy Patterson
2017-05-16build-system/asdf: Use asdf to determine dependencies....This removes the need for conventions to determine which inputs are run-time dependencies, and also the need to specify "special" dependencies. * guix/build/lisp-utils.scm (patch-asd-file, lisp-dependencies) (wrap-perform-method): Remove them. (inputs->asd-file-map, system-dependencies, generate-system-definition) (generate-dependency-links, make-asd-file): New procedures. (lisp-eval-program): Add an error if no lisp matches. (compile-system): Don't use asdf's in-built asd-file generator. Andy Patterson
2017-05-10build-system: Add package-with-ocaml4.01....* guix/build-system/ocaml.scm (default-ocaml4.01, default-ocaml4.01-findlib, package-with-explicit-ocaml, package-with-ocaml4.01, strip-ocaml4.01-variant): New variables. Ben Woodcroft
2017-05-10guix: Add java-utils....* guix/build/java-utils.scm: New file. * guix/build-system/ant.scm: Use it. * Makefile.am (MODULES): Add it. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hartmut Goebel
2017-05-10ant-build-system: Add default "check" target....* guix/build-system/ant.scm (ant-build): Change default test target to "check"; add "test-dir" argument. * guix/build/ant-build-system.scm (default-build.xml): Add "test-dir" argument; add ant targets "compile-tests" and "check". (configure): Add "test-dir" argument; pass it to "default-build.xml". Ricardo Wurmus
2017-05-10ant-build-system: Allow specifying source directory....* guix/build-system/ant.scm (ant-build), guix/build/ant-build-system.scm (default-build.xml): Add parameter source-dir. * guix/build/ant-build-system.scm (configure): Pass source-dir on to default-build.xml. * doc/guix.texi (Build Systems): Document it. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hartmut Goebel
2017-04-05build-system/python: 'package-with-explicit-python' uses 'package-mapping'....* guix/build-system/python.scm (package-with-explicit-python) [package-variant, cut?]: New procedures. [transform]: Remove 'mlambdaq' form and input tuple handling. Use 'package-mapping'. Ludovic Courtès
2017-03-17build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags....* guix/build-system/cargo.scm (cargo-build): Add cargo-build-flags, remove configure-flags. Danny Milosavljevic
2017-03-17gnu: r: Rename to r-minimal....* gnu/packages/statistics.scm (r): Rename to... (r-minimal): ...this new variable. (r-with-recommended-packages): Rename to... (r): ...this. * guix/build-system/r.scm (default-r): Reference r-minimal. * gnu/packages/emacs.scm (emacs-ess)[inputs], gnu/packages/machine-learning.scm (shogun)[inputs], gnu/packages/python.scm (python-rpy2)[inputs], gnu/packages/bioinformatics.scm (ribotaper)[inputs], (couger)[propagated-inputs], (roary)[inputs], (rsem)[inputs], (rcas-web)[inputs]: Change "r" to "r-minimal". Ricardo Wurmus
2017-03-03build-system/cargo: Export %cargo-build-system-modules....* guix/build-system/cargo.scm (%cargo-build-system-modules): Export. Danny Milosavljevic
2017-02-10gnu: Add dub-build-system....* guix/build-system/dub.scm: New file. * guix/build/dub-build-system.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi: Add section for dub-build-system. Danny Milosavljevic
2017-01-28build-system/python: 'package-with-explicit-python' uses 'eq?' memoization....* guix/build-system/python.scm (package-with-explicit-python): Use 'mlambdaq' instead of 'mlambda'. This does not change the <package> graph and has no visible impact on performance. Ludovic Courtès