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2023-07-12import/cran: Add one more package name transformation.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add entry for "zlib-devel".
2023-06-14import/cran: Add another clause for ASL 2.0.Ricardo Wurmus
* guix/import/cran.scm (string->license): Add clause for >= 2.0.
2023-06-05import/cran: Ensure current package is not among inputs.Ricardo Wurmus
* guix/import/cran.scm (cran-package-inputs): Remove the current package from the result.
2023-06-02import/cran: string->license: Add another case for GPLv3+.Ricardo Wurmus
* guix/import/cran.scm (string->license): Translate "GPL (>=3)" to gpl3+.
2023-06-02import/cran: Libraries should not use CRAN-GUIX-NAME.Ricardo Wurmus
* guix/import/cran.scm (source-dir->dependencies): Do not use CRAN-GUIX-NAME when processing result of NEEDED-LIBRARIES-IN-DIRECTORY.
2023-06-02import/cran: Also search Makevars file for libraries.Ricardo Wurmus
* guix/import/cran.scm (needed-libraries-in-directory): Look at Makevars in addition to Makevars.in for libraries.
2023-05-31upstream: Replace 'input-changes' field by 'inputs'.Ludovic Courtès
Returning the expected list of inputs rather than changes relative to the current package definition is less ambiguous and offers more possibilities for further processing. * guix/upstream.scm (<upstream-source>)[input-changes]: Remove. [inputs]: New field. (<upstream-input>): New record type. * guix/upstream.scm (upstream-input-type-predicate) (input-type-filter, upstream-source-regular-inputs) (upstream-source-native-inputs, upstream-source-propagated-inputs): New procedures. (changed-inputs): Expect an <upstream-source> as its second argument. Adjust accordingly. * guix/import/pypi.scm (distribution-sha256): New procedure. (maybe-inputs): Expect a list of <upstream-input>. (compute-inputs): Rewrite to return a list of <upstream-input>. (pypi-package-inputs, pypi-package->upstream-source): New procedures. (make-pypi-sexp): Use it. * guix/import/stackage.scm (latest-lts-release): Define 'cabal'. Replace 'input-changes' field by 'inputs'. * guix/scripts/refresh.scm (update-package): Use 'changed-inputs' instead of 'upstream-source-input-changes'. * tests/cran.scm ("description->package"): Adjust order of inputs. * tests/pypi.scm (default-sha256, default-sha256/base32): New variables. (foo-json): Add 'digests' entry. ("pypi->guix-package, no wheel"): Check HASH against DEFAULT-SHA256/BASE32. ("pypi->guix-package, wheels"): Likewise. ("pypi->guix-package, no usable requirement file."): Likewise. ("pypi->guix-package, package name contains \"-\" followed by digits"): Likewise. ("package-latest-release"): New test. * tests/upstream.scm (test-package-sexp): Remove. ("changed-inputs returns no changes"): Rewrite to use <upstream-source>. (test-new-package-sexp): Remove. ("changed-inputs returns changes to plain input list"): Rewrite. ("changed-inputs returns changes to all plain input lists"): Likewise. ("changed-inputs returns changes to labelled input list") ("changed-inputs returns changes to all labelled input lists"): Remove. * guix/import/cran.scm (maybe-inputs): Expect PACKAGE-INPUTS to be a list of <upstream-input>. (source-dir->dependencies): Return a list of <upstream-input>. (vignette-builders): Likewise. (uri-helper, cran-package-source-url) (cran-package-propagated-inputs, cran-package-inputs): New procedures. (description->package): Use them instead of local definitions. (latest-cran-release): Replace 'input-changes' field by 'inputs'. (latest-bioconductor-release): Likewise. (format-inputs): Remove. * guix/import/hackage.scm (cabal-package-inputs): New procedure. (hackage-module->sexp): Use it. [maybe-inputs]: Expect a list of <upstream-input>.
2023-04-29import/cran: Translate from xml2 to libxml2.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add translation from xml2 to libxml2.
2023-04-29import/cran: Add "unix" to list of invalid packages.Ricardo Wurmus
* guix/import/cran.scm (invalid-packages): Add "unix".
2023-04-29guix: Upgrade to Bioconductor 3.16.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.17. * guix/import/cran.scm (%bioconductor-version): Same.
2023-03-13guix: Strip #:use-module lists.Ludovic Courtès
This was obtained by setting up this environment: guix shell -D guix --with-input=guile@3.0.9=guile-next \ --with-commit=guile-next=e2ed33ef0445c867fe56c247054aa67e834861f2 -- make -j5 then adding 'unused-module' to (@@ (guix build compiler) %warnings), building, and checking all the "unused module" warnings and removing those that were definitely unused.
2023-02-18import/cran: Remove directory-needs-zlib? in favor of ↵Ricardo Wurmus
needed-libraries-in-directory. * guix/import/cran.scm (directory-needs-zlib?): Remove procedure. (source-dir->dependencies): Use needed-libraries-in-directory instead of directory-needs-zlib?.
2023-02-18import/cran: Add generic way to detect needed libraries.Ricardo Wurmus
* guix/import/cran.scm (needed-libraries-in-directory): New procedure. (libraries-pattern, packages-for-matches): New variables.
2023-02-18import/cran: Process all vignette builders.Ricardo Wurmus
* guix/import/cran.scm (needs-knitr?): Remove procedure. (vignette-builders): New procedure. (description->package): Use vignette-builders instead of needs-knitr?.
2023-02-18import/cran: Add name mapping for libjpeg.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add mapping from libjpeg to libjpeg-turbo.
2023-02-18import/cran: Add directory-needs-esbuild?.Ricardo Wurmus
* guix/import/cran.scm (directory-needs-esbuild?): New procedure. (source-dir->dependencies): Use it.
2023-01-09import/cran: Fix Bioconductor updater.Ricardo Wurmus
* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION instead of VERSION, which is always #F.
2022-12-31import/cran: Depend on gfortran if .f files are detected too.Lars-Dominik Braun
There was an inconsistency between tarball-needs-fortran? and directory-needs-fortran?. * guix/import/cran.scm (directory-needs-fortran?): Match .f files too.
2022-12-31import/cran: Use multiple values instead of a list of lists.Ricardo Wurmus
* guix/import/cran.scm (source-dir->dependencies): Return multiple values. (description->package): Bind two values.
2022-12-31import/cran: Always operate on source directory.Lars-Dominik Braun
Extracting the source tarball multiple times is very slow and a speedup of >2x (without network I/O) can be achieved by coalescing all NEEDS-X? functions into a single one, which extracts a tarball only once. * guix/import/cran.scm (tarball-needs-fortran?): Remove unused function. (needs-fortran?): Ditto. (tarball-files-match-pattern?): Ditto. (tarball-needs-zlib?): Ditto. (needs-zlib?): Ditto. (tarball-needs-pkg-config?): Ditto. (needs-pkg-config?): Ditto. (source-dir->dependencies): New function. (source->dependencies): New function. (description->package): Use it.
2022-12-31import/cran: Translate more package dependencies.Lars-Dominik Braun
Assumes we use package variable names, not package specification names. * guix/import/cran.scm (invalid-packages): Add more invalid names. (transform-sysname): Transform more package names.
2022-12-31import/cran: Allow overriding tarball download.Lars-Dominik Braun
* guix/import/cran.scm (description->package): Accept new keyword argument DOWNLOAD-SOURCE. (cran->guix-package): Ditto.
2022-12-31import/cran: Allow overriding description fetch function.Lars-Dominik Braun
* guix/import/cran.scm (cran->guix-package): New keyword argument FETCH-DESCRIPTION.
2022-12-31import/cran: Allow custom license prefix.Lars-Dominik Braun
* guix/import/cran.scm (string-licenses): Add license-prefix argument. (string->license): Ditto. (description->package): Ditto. (cran->guix-package): Ditto. (cran-recursive-import): Ditto. * guix/scripts/import/cran.scm (%options): Add new option -p/--license-prefix. (show-help): Document it. (parse-options): Pass it to importer. * doc/guix.texi (Invoking guix import): Document it.
2022-12-31import/utils: Pass all arguments through to package builder.Lars-Dominik Braun
Individual importer may have additional arguments. * guix/import/utils.scm (recursive-import): Patch all keyword arguments through to repo->guix-package. * guix/import/cran.scm (cran->guix-package): Add #:allow-other-keys. * guix/import/crate.scm (crate->guix-package): Ditto. * guix/import/egg.scm (egg->guix-package): Ditto. * guix/import/elm.scm (elm->guix-package): Ditto. * guix/import/gem.scm (gem->guix-package): Ditto. * guix/import/gnu.scm (gnu->guix-package): Ditto. * guix/import/go.scm (go-module->guix-package): Ditto. (go-module-recursive-import): Ditto. * guix/import/hackage.scm (hackage->guix-package): Ditto. (hackage-recursive-import): Ditto. * guix/import/hexpm.scm (hexpm->guix-package): Ditto. * guix/import/minetest.scm (minetest->guix-package): Ditto. (minetest-recursive-import): Ditto. * guix/import/opam.scm (opam->guix-package): Ditto. * guix/import/pypi.scm (pypi->guix-package): Ditto. * guix/import/stackage.scm (stackage->guix-package): Ditto. (stackage-recursive-import): Ditto. * guix/import/texlive.scm (texlive->guix-package): Ditto.
2022-12-26import: Issue error-message if version is given.Hartmut Goebel
These importer don't support importing a specific version, thus the updater does neither. Issue an error message in case version is given. * guix/import/cpan.scm (latest-release), guix/import/elpa.scm (latest-release), guix/import/hackage.scm (latest-release), guix/import/minetest.scm (latest-minetest-release), guix/import/opam.scm (latest-release): Add #:version argument, issue error if version is given. * guix/import/cran.scm (latest-cran-release): Same. (latest-bioconductor-release) Same. <version>: rename to <latest-version>. * guix/import/stackage.scm (latest-lts-release): For each generated updater, add #:version argument and issue error if version is given.
2022-12-26upstream-updater: Rename record field.Hartmut Goebel
The next commits will make the functions, which are currently importing the latest version of a package, change into importing the latest or a given version of the package (for those updaters supporting specifying a version). Thus the name ‘latest‘ is no longer appropriate. * guix/upstream.scm (upstream-updater) Rename field [latest] to [import]. (lookup-updater, package-latest-release) Adjust fieldname accordingly. * guix/gnu-maintenance.scm (%gnu-updater, %gnu-ftp-updater, %savannah-updater, %sourceforge-updater, %xorg-updater, %kernel.org-updater, %generic-html-updater), guix/import/cpan.scm (%cpan-updater), guix/import/cran.scm (%cran-updater, %bioconductor-updater), guix/import/crate.scm (%crate-updater), guix/import/egg.scm (%egg-updater), guix/import/elpa.scm (%elpa-updater), guix/import/gem.scm (%gem-updater), guix/import/git.scm (%generic-git-updater), guix/import/github.scm (%github-updater), guix/import/gnome.scm (%gnome-updater), guix/import/hackage.scm (%hackage-updater), guix/import/hexpm.scm (%hexpm-updater), guix/import/kde.scm (%kde-updater), guix/import/launchpad.scm (%launchpad-updater), guix/import/minetest.scm (%minetest-updater), guix/import/opam.scm (%opam-updater), guix/import/pypi.scm (%pypi-updater), guix/import/stackage.scm (%stackage-updater), tests/import-github.scm (found-sexp) tests/transformations.scm ("options->transformation, with-latest"): Adjust fieldname accordingly.
2022-12-19import/cran: Add more mappings from sysnames to Guix package names.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add more mappings.
2022-11-29import/cran: Add package name mapping.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add mapping from sqlite3 to sqlite.
2022-11-24guix: Upgrade to Bioconductor 3.16.zimoun
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.16. * guix/import/cran.scm (%bioconductor-version): Same.
2022-11-16import/cran: Add package mapping for freetype.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Map "freetype2" to "freetype".
2022-11-11import/cran: Add package name mapping for "booktabs".Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add mapping for "booktabs".
2022-11-11import/cran: Add more strings to the list of invalid packages.Ricardo Wurmus
* guix/import/cran.scm (invalid-packages): Add "c++", "c++17", and "posix.1-2001" to list of invalid packages.
2022-09-28import/cran: Process more complex license strings.Ricardo Wurmus
* guix/import/cran.scm (string->license): Add more match clauses. (string->licenses): Split license conjunctions at "|" and apply string->license on each license. (description->package): Use string->licenses.
2022-09-28import/cran: Use beautify-synopsis.Ricardo Wurmus
* guix/import/cran.scm (description->package): Use beautify-synopsis.
2022-09-28import/cran: Transform external package names to Guix names.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): New procedure. (description->package): Use it on inputs that are derived from "sysdepends".
2022-09-28import/cran: Add more strings to invalid-packages.Ricardo Wurmus
* guix/import/cran.scm (invalid-packages): Add none, windows, and xcode.
2022-09-20import/cran: description->package: Use COND and computed booleans.Ricardo Wurmus
* guix/import/cran.scm (description->package): Use COND with previously computed booleans instead of using CASE on REPOSITORY.
2022-09-20import/cran: download: Accept optional REF argument.Ricardo Wurmus
* guix/import/cran.scm (download): Accept REF argument for git downloads.
2022-05-28guix: Upgrade to Bioconductor 3.15.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same.
2022-03-07import: cran: Return multiple values for unknown packages.zimoun
Partly fixes <https://bugs.gnu.org/44115>. * guix/import/pypi.scm (cran->guix-package): Return 'values'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20guix: import/cran: Cast booleans.Ricardo Wurmus
This is needed due to a change in file-hash*. * guix/import/cran.scm (description->package): Ensure that GIT? and HG? are booleans.
2022-01-06import: Factorize file hashing.Sarah Morgensen
* guix/import/cran.scm (vcs-file?, file-hash): Remove procedures. (description->package): Use 'file-hash*' instead. * guix/import/elpa.scm (vcs-file?, file-hash): Remove procedures. (git-repository->origin, elpa-package->sexp): Use 'file-hash* instead'. * guix/import/go.scm (vcs-file?, file-hash): Remove procedures. (git-checkout-hash): Use 'file-hash*' instead. * guix/import/minetest.scm (file-hash): Remove procedure. (make-minetest-sexp): Use 'file-hash*' instead. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-11import: cran: Allow imports of a specific version.Ludovic Courtès
* guix/import/cran.scm (download): Handle the case where URL is a list. (fetch-description-from-tarball): New procedure. (fetch-description): Add #:version parameter. Honor it when REPOSITORY is 'cran. Use 'fetch-description-from-tarball' when REPOSITORY is 'bioconductor. (description->package): SOURCE-URL may now be a list. (cran->guix-package): Pass VERSION to 'fetch-description'. (cran-recursive-import): Add #:version parameter. * guix/scripts/import/cran.scm (guix-import-cran): Expect a spec rather than a mere package name. * doc/guix.texi (Invoking guix import): Document it.
2021-11-08Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-07guix: Upgrade to Bioconductor 3.14.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same.
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-28import: cran: Use the standard diagnostic procedures.Ludovic Courtès
* guix/import/cran.scm (bioconductor-packages-list) (fetch-description): Use 'warning' instead of 'format'.
2021-07-11import: cran: Emit new-style package inputs.Ludovic Courtès
* guix/import/cran.scm (format-inputs): Emit symbols or 'specification->package' calls. (maybe-inputs): Wrap in 'list' instead of 'quasiquote'. * tests/cran.scm ("description->package"): Adjust accordingly.
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