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2023-03-13guix: Strip #:use-module lists....This was obtained by setting up this environment: guix shell -D guix --with-input=guile@3.0.9=guile-next \ --with-commit=guile-next=e2ed33ef0445c867fe56c247054aa67e834861f2 -- make -j5 then adding 'unused-module' to (@@ (guix build compiler) %warnings), building, and checking all the "unused module" warnings and removing those that were definitely unused. Ludovic Courtès
2023-02-18import/cran: Remove directory-needs-zlib? in favor of needed-libraries-in-dir......* guix/import/cran.scm (directory-needs-zlib?): Remove procedure. (source-dir->dependencies): Use needed-libraries-in-directory instead of directory-needs-zlib?. Ricardo Wurmus
2023-02-18import/cran: Add generic way to detect needed libraries....* guix/import/cran.scm (needed-libraries-in-directory): New procedure. (libraries-pattern, packages-for-matches): New variables. Ricardo Wurmus
2023-02-18import/cran: Process all vignette builders....* guix/import/cran.scm (needs-knitr?): Remove procedure. (vignette-builders): New procedure. (description->package): Use vignette-builders instead of needs-knitr?. Ricardo Wurmus
2023-02-18import/cran: Add name mapping for libjpeg....* guix/import/cran.scm (transform-sysname): Add mapping from libjpeg to libjpeg-turbo. Ricardo Wurmus
2023-02-18import/cran: Add directory-needs-esbuild?....* guix/import/cran.scm (directory-needs-esbuild?): New procedure. (source-dir->dependencies): Use it. Ricardo Wurmus
2023-01-09import/cran: Fix Bioconductor updater....* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION instead of VERSION, which is always #F. Ricardo Wurmus
2022-12-31import/cran: Depend on gfortran if .f files are detected too....There was an inconsistency between tarball-needs-fortran? and directory-needs-fortran?. * guix/import/cran.scm (directory-needs-fortran?): Match .f files too. Lars-Dominik Braun
2022-12-31import/cran: Use multiple values instead of a list of lists....* guix/import/cran.scm (source-dir->dependencies): Return multiple values. (description->package): Bind two values. Ricardo Wurmus
2022-12-31import/cran: Always operate on source directory....Extracting the source tarball multiple times is very slow and a speedup of >2x (without network I/O) can be achieved by coalescing all NEEDS-X? functions into a single one, which extracts a tarball only once. * guix/import/cran.scm (tarball-needs-fortran?): Remove unused function. (needs-fortran?): Ditto. (tarball-files-match-pattern?): Ditto. (tarball-needs-zlib?): Ditto. (needs-zlib?): Ditto. (tarball-needs-pkg-config?): Ditto. (needs-pkg-config?): Ditto. (source-dir->dependencies): New function. (source->dependencies): New function. (description->package): Use it. Lars-Dominik Braun
2022-12-31import/cran: Translate more package dependencies....Assumes we use package variable names, not package specification names. * guix/import/cran.scm (invalid-packages): Add more invalid names. (transform-sysname): Transform more package names. Lars-Dominik Braun
2022-12-31import/cran: Allow overriding tarball download....* guix/import/cran.scm (description->package): Accept new keyword argument DOWNLOAD-SOURCE. (cran->guix-package): Ditto. Lars-Dominik Braun
2022-12-31import/cran: Allow overriding description fetch function....* guix/import/cran.scm (cran->guix-package): New keyword argument FETCH-DESCRIPTION. Lars-Dominik Braun
2022-12-31import/cran: Allow custom license prefix....* guix/import/cran.scm (string-licenses): Add license-prefix argument. (string->license): Ditto. (description->package): Ditto. (cran->guix-package): Ditto. (cran-recursive-import): Ditto. * guix/scripts/import/cran.scm (%options): Add new option -p/--license-prefix. (show-help): Document it. (parse-options): Pass it to importer. * doc/guix.texi (Invoking guix import): Document it. Lars-Dominik Braun
2022-12-31import/utils: Pass all arguments through to package builder....Individual importer may have additional arguments. * guix/import/utils.scm (recursive-import): Patch all keyword arguments through to repo->guix-package. * guix/import/cran.scm (cran->guix-package): Add #:allow-other-keys. * guix/import/crate.scm (crate->guix-package): Ditto. * guix/import/egg.scm (egg->guix-package): Ditto. * guix/import/elm.scm (elm->guix-package): Ditto. * guix/import/gem.scm (gem->guix-package): Ditto. * guix/import/gnu.scm (gnu->guix-package): Ditto. * guix/import/go.scm (go-module->guix-package): Ditto. (go-module-recursive-import): Ditto. * guix/import/hackage.scm (hackage->guix-package): Ditto. (hackage-recursive-import): Ditto. * guix/import/hexpm.scm (hexpm->guix-package): Ditto. * guix/import/minetest.scm (minetest->guix-package): Ditto. (minetest-recursive-import): Ditto. * guix/import/opam.scm (opam->guix-package): Ditto. * guix/import/pypi.scm (pypi->guix-package): Ditto. * guix/import/stackage.scm (stackage->guix-package): Ditto. (stackage-recursive-import): Ditto. * guix/import/texlive.scm (texlive->guix-package): Ditto. Lars-Dominik Braun
2022-12-26import: Issue error-message if version is given....These importer don't support importing a specific version, thus the updater does neither. Issue an error message in case version is given. * guix/import/cpan.scm (latest-release), guix/import/elpa.scm (latest-release), guix/import/hackage.scm (latest-release), guix/import/minetest.scm (latest-minetest-release), guix/import/opam.scm (latest-release): Add #:version argument, issue error if version is given. * guix/import/cran.scm (latest-cran-release): Same. (latest-bioconductor-release) Same. <version>: rename to <latest-version>. * guix/import/stackage.scm (latest-lts-release): For each generated updater, add #:version argument and issue error if version is given. Hartmut Goebel
2022-12-26upstream-updater: Rename record field....The next commits will make the functions, which are currently importing the latest version of a package, change into importing the latest or a given version of the package (for those updaters supporting specifying a version). Thus the name ‘latest‘ is no longer appropriate. * guix/upstream.scm (upstream-updater) Rename field [latest] to [import]. (lookup-updater, package-latest-release) Adjust fieldname accordingly. * guix/gnu-maintenance.scm (%gnu-updater, %gnu-ftp-updater, %savannah-updater, %sourceforge-updater, %xorg-updater, %kernel.org-updater, %generic-html-updater), guix/import/cpan.scm (%cpan-updater), guix/import/cran.scm (%cran-updater, %bioconductor-updater), guix/import/crate.scm (%crate-updater), guix/import/egg.scm (%egg-updater), guix/import/elpa.scm (%elpa-updater), guix/import/gem.scm (%gem-updater), guix/import/git.scm (%generic-git-updater), guix/import/github.scm (%github-updater), guix/import/gnome.scm (%gnome-updater), guix/import/hackage.scm (%hackage-updater), guix/import/hexpm.scm (%hexpm-updater), guix/import/kde.scm (%kde-updater), guix/import/launchpad.scm (%launchpad-updater), guix/import/minetest.scm (%minetest-updater), guix/import/opam.scm (%opam-updater), guix/import/pypi.scm (%pypi-updater), guix/import/stackage.scm (%stackage-updater), tests/import-github.scm (found-sexp) tests/transformations.scm ("options->transformation, with-latest"): Adjust fieldname accordingly. Hartmut Goebel
2022-12-19import/cran: Add more mappings from sysnames to Guix package names....* guix/import/cran.scm (transform-sysname): Add more mappings. Ricardo Wurmus
2022-11-29import/cran: Add package name mapping....* guix/import/cran.scm (transform-sysname): Add mapping from sqlite3 to sqlite. Ricardo Wurmus
2022-11-24guix: Upgrade to Bioconductor 3.16....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.16. * guix/import/cran.scm (%bioconductor-version): Same. zimoun
2022-11-16import/cran: Add package mapping for freetype....* guix/import/cran.scm (transform-sysname): Map "freetype2" to "freetype". Ricardo Wurmus
2022-11-11import/cran: Add package name mapping for "booktabs"....* guix/import/cran.scm (transform-sysname): Add mapping for "booktabs". Ricardo Wurmus
2022-11-11import/cran: Add more strings to the list of invalid packages....* guix/import/cran.scm (invalid-packages): Add "c++", "c++17", and "posix.1-2001" to list of invalid packages. Ricardo Wurmus
2022-09-28import/cran: Process more complex license strings....* guix/import/cran.scm (string->license): Add more match clauses. (string->licenses): Split license conjunctions at "|" and apply string->license on each license. (description->package): Use string->licenses. Ricardo Wurmus
2022-09-28import/cran: Use beautify-synopsis....* guix/import/cran.scm (description->package): Use beautify-synopsis. Ricardo Wurmus
2022-09-28import/cran: Transform external package names to Guix names....* guix/import/cran.scm (transform-sysname): New procedure. (description->package): Use it on inputs that are derived from "sysdepends". Ricardo Wurmus
2022-09-28import/cran: Add more strings to invalid-packages....* guix/import/cran.scm (invalid-packages): Add none, windows, and xcode. Ricardo Wurmus
2022-09-20import/cran: description->package: Use COND and computed booleans....* guix/import/cran.scm (description->package): Use COND with previously computed booleans instead of using CASE on REPOSITORY. Ricardo Wurmus
2022-09-20import/cran: download: Accept optional REF argument....* guix/import/cran.scm (download): Accept REF argument for git downloads. Ricardo Wurmus
2022-05-28guix: Upgrade to Bioconductor 3.15....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same. Ricardo Wurmus
2022-03-07import: cran: Return multiple values for unknown packages....Partly fixes <https://bugs.gnu.org/44115>. * guix/import/pypi.scm (cran->guix-package): Return 'values'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun
2022-01-20guix: import/cran: Cast booleans....This is needed due to a change in file-hash*. * guix/import/cran.scm (description->package): Ensure that GIT? and HG? are booleans. Ricardo Wurmus
2022-01-06import: Factorize file hashing....* guix/import/cran.scm (vcs-file?, file-hash): Remove procedures. (description->package): Use 'file-hash*' instead. * guix/import/elpa.scm (vcs-file?, file-hash): Remove procedures. (git-repository->origin, elpa-package->sexp): Use 'file-hash* instead'. * guix/import/go.scm (vcs-file?, file-hash): Remove procedures. (git-checkout-hash): Use 'file-hash*' instead. * guix/import/minetest.scm (file-hash): Remove procedure. (make-minetest-sexp): Use 'file-hash*' instead. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sarah Morgensen
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-11import: cran: Allow imports of a specific version....* guix/import/cran.scm (download): Handle the case where URL is a list. (fetch-description-from-tarball): New procedure. (fetch-description): Add #:version parameter. Honor it when REPOSITORY is 'cran. Use 'fetch-description-from-tarball' when REPOSITORY is 'bioconductor. (description->package): SOURCE-URL may now be a list. (cran->guix-package): Pass VERSION to 'fetch-description'. (cran-recursive-import): Add #:version parameter. * guix/scripts/import/cran.scm (guix-import-cran): Expect a spec rather than a mere package name. * doc/guix.texi (Invoking guix import): Document it. Ludovic Courtès
2021-11-08Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-07guix: Upgrade to Bioconductor 3.14....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same. Ricardo Wurmus
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-28import: cran: Use the standard diagnostic procedures....* guix/import/cran.scm (bioconductor-packages-list) (fetch-description): Use 'warning' instead of 'format'. Ludovic Courtès
2021-07-11import: cran: Emit new-style package inputs....* guix/import/cran.scm (format-inputs): Emit symbols or 'specification->package' calls. (maybe-inputs): Wrap in 'list' instead of 'quasiquote'. * tests/cran.scm ("description->package"): Adjust accordingly. Ludovic Courtès
2021-06-05guix: Update to Bioconductor 3.13....* guix/build-system/r.scm (bioconductor-uri): Update version. * guix/import/cran.scm (%bioconductor-version): Update. Ricardo Wurmus
2021-03-01import/cran: Fix detection of Fortran files....This fixes a bug whereby the Guix importer considers files like .f.* to be Fortran files. The expression "\\.f(90|95)?" would match a lot of files containing ".f" although they are not Fortran files. Instead we should only consider files with this *suffix*. * guix/import/cran.scm (directory-needs-fortran?): Only check for suffixes. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-01-20import/cran: Add more invalid package names to ignore....* guix/import/cran.scm (invalid-packages): Add more names. Ricardo Wurmus
2020-12-22import/cran: Add input style "specification"....* guix/import/cran.scm (%input-style): New parameter. (format-inputs): Use it. * guix/scripts/import/cran.scm (guix-import-cran): Set the %input-style parameter. (%options): Add "--style" option. * doc/guix.texi (Invoking guix import): Document it. Ricardo Wurmus
2020-12-15import: cran: Use CRAN’s canonical URL as home-page....* guix/import/cran.scm (%cran-canonical-url): New variable. (description->package): Construct home-page using canonical URL. Signed-off-by: Christopher Baines <mail@cbaines.net> Lars-Dominik Braun
2020-12-12import/cran: Abort with error message when recursive import fails....Previously, after a failed recursive import "guix import" would signal success. * guix/import/cran.scm (cran->guix-package): Raise a condition when all repositories have been exhausted. * guix/scripts/import/cran.scm (guix-import-cran): Handle errors. Ricardo Wurmus
2020-12-09import: cran: Update the Bioconductor version to 3.12....* guix/import/cran.scm (%bioconductor-version): Set to 3.12. * guix/build-system/r.scm (bioconductor-uri): Update to 3.12. Roel Janssen
2020-12-04import/cran: Fix calls to CRAN->GUIX-PACKAGE....* guix/import/cran.scm (cran->guix-package, latest-bioconductor-release): Invoke CRAN->GUIX-PACKAGE with #:REPO keyword argument. Ricardo Wurmus
2020-12-02import: utils: 'recursive-import' accepts an optional version parameter....This adds a key VERSION to 'recursive-import' and moves the parameter REPO to a key. This also changes all the places that rely on 'recursive-import'. * guix/import/utils.scm (recursive-import): Add the VERSION key. Make REPO a key. (package->definition): Add optional 'append-version?'. * guix/scripts/import/crate.scm (guix-import-crate): Add the VERSION key. * guix/import/crate.scm (crate->guix-package): Add the VERSION key. (crate-recursive-import): Pass VERSION to recursive-import, remove now unnecessary code. * guix/import/cran.scm (cran->guix-package, cran-recursive-import): Change the REPO parameter to a key. * guix/import/elpa.scm (elpa->guix-package, elpa-recursive-import): Likewise. * guix/import/gem.scm (gem->guix-package, recursive-import): Likewise. * guix/import/opam.scm (opam-recurive-import): Likewise. * guix/import/pypi.scm (pypi-recursive-import): Likewise. * guix/import/stackage.scm (stackage-recursive-import): Likewise. * guix/scripts/import/cran.scm (guix-import-cran): Likewise. * guix/scripts/import/elpa.scm (guix-import-elpa): Likewise. * tests/elpa.scm (eval-test-with-elpa): Likewise. * tests/import-utils.scm (recursive-import): Likewise. Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com> Martin Becze
2020-07-03upstream: Define 'url-predicate' and use it....* guix/upstream.scm (url-predicate): New procedure. (url-prefix-predicate): Define in terms of 'url-predicate'. * guix/import/cpan.scm (cpan-package?): Use 'url-predicate'. * guix/import/cran.scm (cran-package?) (bioconductor-package?) (bioconductor-data-package?) (bioconductor-experiment-package?): Likewise. * guix/import/crate.scm (crate-package?): Likewise. * guix/import/elpa.scm (package-from-gnu.org?): Likewise. * guix/import/hackage.scm (hackage-package?): Likewise. * guix/import/pypi.scm (pypi-package?): Likewise. * guix/import/gem.scm (gem-package?): Use 'url-prefix-predicate'. Ludovic Courtès