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2019-12-15guix: Upgrade to Bioconductor 3.10.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10. * guix/import/cran.scm (%bioconductor-version): Same.
2019-12-14import: cran: Recognize LGPL 2.1+.Ricardo Wurmus
* guix/import/cran.scm (string->license): Add case for lgpl2.1+.
2019-12-13import: utils: Update docstring of 'recursive-import'.Ludovic Courtès
This is a followup to 70a8e13277d4a44b89dd9ee2290b98105f0235f1. * guix/import/utils.scm (recursive-import): Update docstring.
2019-12-11import: crate: Better handle license expressions.Brice Waegeneire
* guix/import/crate.scm (%dual-license-rx): Removed function. (crate->guix-package): Handle most of the multi-licensing cases. * tests/crate.scm (licenses): Add tests for some licenses. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-11import: utils: 'recursive-import' returns a list rather than a stream.Ludovic Courtès
* guix/import/utils.scm (recursive-import): Remove 'list->stream' call. * guix/scripts/import/cran.scm (guix-import-cran): Remove 'stream->list' call. * guix/scripts/import/crate.scm (guix-import-crate): Likewise. * guix/scripts/import/elpa.scm (guix-import-elpa): Likewise. * guix/scripts/import/gem.scm (guix-import-gem): Likewise. * guix/scripts/import/hackage.scm (guix-import-hackage): Likewise. * guix/scripts/import/opam.scm (guix-import-opam): Likewise. * guix/scripts/import/pypi.scm (guix-import-pypi): Likewise. * guix/scripts/import/stackage.scm (guix-import-stackage): Likewise. * tests/gem.scm ("gem-recursive-import"): Likewise. * tests/import-utils.scm ("recursive-import"): Likewise. Co-authored-by: Brian Leung <bkleung89@gmail.com>
2019-12-11import: utils: 'recursive-import' returns packages in topological order.Ludovic Courtès
* guix/import/utils.scm (topological-sort): New procedure. (recursive-import): Rewrite to use it. * tests/import-utils.scm ("recursive-import"): New test. * guix/import/cran.scm (cran->guix-package): Always return two values. * guix/scripts/import/cran.scm (guix-import-cran): Remove 'reverse' call on 'cran-recursive-import' result. * guix/scripts/import/crate.scm (guix-import-crate): Likewise. * guix/scripts/import/elpa.scm (guix-import-elpa): Likewise. * guix/scripts/import/gem.scm (guix-import-gem): Likewise. * guix/scripts/import/hackage.scm (guix-import-hackage): Likewise. * guix/scripts/import/opam.scm (guix-import-opam): Likewise. * guix/scripts/import/pypi.scm (guix-import-pypi): Likewise. * guix/scripts/import/stackage.scm (guix-import-stackage): Likewise. * tests/gem.scm ("gem-recursive-import"): Change the order of package expressions accordingly.
2019-11-30guix: import: Fix importing dune project.Julien Lepiller
* guix/import/opam.scm: Detect dune projects from dependencies, then filter dune from dependencies.
2019-11-30guix: import: Fix opam importer.Julien Lepiller
* guix/import/opam.scm: Allow line breaks in strings.
2019-11-22import: texlive: Handle multi-license packages.Ludovic Courtès
This fixes "guix import texlive translator". * guix/import/texlive.scm (sxml->package): Add clause for when 'license' is a list of licences, as is the case with the "translator" package.
2019-11-20gnu: Use GHC 8.6.5 as the main Haskell compiler.Timothy Sample
* gnu/package/haskell.scm (ghc-8): Change to 'ghc-8.6'. * guix/import/hackage.scm (ghc-standard-libraries): Add 'ghc-heap' and 'libiserv'.
2019-10-01import: crate: Support recursive imports.Martin Becze
* guix/import/crate.scm (crate-recursive-import): New procedure. (crate->guix-package): Return dependencies as a second value. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-23import: stackage: Fix typo.Vagrant Cascadian
* guix/import/stackage: Fix spelling of "version".
2019-09-20import/github: Check for more version prefixes.Efraim Flashner
* guix/import/github.scm (latest-released-version): Allow the version string to begin with the word 'version'.
2019-09-18import: pypi: Refresher recognizes pythonhosted.org source URLs.Ludovic Courtès
This is a followup to a5376200541abf8245973e601be246bf65b8b6c7. Since that commit, 'pypi-package?' would return false for most Python packages, and thus "guix refresh python-xxx" would report that no updaters apply to the package. * guix/import/pypi.scm (pypi-package?)[pypi-url?]: Recognize "files.pythonhosted.org" URLs.
2019-09-16import/cran: Export %bioconductor-version.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-version): Export it.
2019-09-14import/utils: beautify-description: Recognize more fragments.Ricardo Wurmus
* guix/import/utils.scm (beautify-description): Handle additional common initial sentence fragments in descriptions.
2019-09-10import: KDE updater finds packages even in sub-directory.Hartmut Goebel
Fixes <http://issues.guix.gnu.org/issue/30345> and finally fixes <http://issues.guix.gnu.org/issue/25020>. Formerly packages living in a path like /stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz have not been found. * guix/import/kde.scm (uri->kde-path-pattern): New procedure. (latest-kde-release): Use pattern to search for file.
2019-09-10upstream: Move KDE updater into a separate module.Hartmut Goebel
As it was done for (guix import gnome). * guix/import/kde.scm: New file. * Makefile.am (MODULES): Add it. * guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri) (download.kde.org-files) (latest-kde-release): Remove.
2019-09-10import: crate: Allow imports of a specific version.Martin Becze
* guix/import/crate.scm (crate->guix-package): Add optional 'version' argument and honor it. * guix/scripts/import/crate.scm (guix-import-crate): Assume the first argument is a spec and destructure it with 'package-name->name+version'. Pass both to 'crate->guix-package'. * doc/guix.texi (Invoking guix import): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-09-08import: github: Fix incorrect no-release case.Ludovic Courtès
This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d. Since that commit, when /releases returned an empty JSON array, we would not fall back to /tags because of the incorrect match. * guix/import/github.scm (fetch-releases-or-tags): Match the empty vector instead of the empty list.
2019-09-04import: opam: Use propagated-inputs instead of inputs.Julien Lepiller
* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs.
2019-09-04import: opam: Remove initial "v" in some version numbers.Julien Lepiller
* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers.
2019-09-04import: crate: Correct interpretation of dual-licensing strings.Ludovic Courtès
* guix/import/crate.scm (%dual-license-rx): New variable. (crate->guix-package)[string->license]: Rewrite to match it. * tests/crate.scm (test-crate): Adjust "license" field to current practice.
2019-09-04import: crate: Separate crates.io API from actual conversion.Ludovic Courtès
This provides a clean separation between bindings to the https://crates.io/api/v1 API and actual conversion to Guix package sexps. As a side-effect, it fixes things like "guix import blake2-rfc", "guix refresh -t crates", etc. * guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>): New record types. (lookup-crate, crate-version-dependencies): New procedures. (crate-fetch): Remove. (crate->guix-package): Rewrite to use the new API. (latest-release): Likewise. * guix/build-system/cargo.scm (%crate-base-url): New variable. * tests/crate.scm (test-crate): Update accordingly. fixlet
2019-09-02import: cran: Only use the git import with what looks like a URL.Ricardo Wurmus
* guix/import/cran.scm (fetch-description): Abort if the argument does not look like a URL.
2019-09-02import: cran: Retry failed git imports on Bioconductor.Ricardo Wurmus
* guix/import/cran.scm (cran->guix-package): Retry failed git imports on Bioconductor.
2019-08-29import: cran: Add support for git repositories.Ricardo Wurmus
* guix/import/cran.scm (vcs-file?): New procedure. (download): Support downloading from git. (fetch-description): Add a clause for the 'git repository type. (files-match-pattern?): New procedure. (tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?. (directory-needs-fortran?, directory-needs-zlib?, directory-needs-pkg-config?): New procedures. (needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures... (tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?): ...to this, and use them. (file-hash): New procedure. (description->package): Handle the 'git repository type. * guix/import/utils.scm (package->definition): Handle package expression inside of a let. * guix/scripts/import.scm (guix-import): Handle let expressions. * doc/guix.texi (Invoking guix import): Document it.
2019-08-27import: github: 'github-package?' uses 'package-upstream-name'.Ludovic Courtès
* guix/import/github.scm (updated-github-url): Use 'package-upstream-name' instead of 'package-name'. This allows 'github-package?' to match more packages, given an appropriate upstream name.
2019-08-22Revert "import: utils: Add hash-ref*."Mark H Weaver
This reverts commit 8a3b11d1eb21e54b4f3a3cbceffed8ce2c11512e.
2019-08-22Revert "import: cpan: Adapt for the change to guile-json version 3."Mark H Weaver
This reverts commit 01ce7af25add55514f737af48ea6c127bedfde67.
2019-08-21import: cpan: Adapt for the change to guile-json version 3.Christopher Baines
In guile-json version 3, JSON objects are represented as hash tables, rather than alists. * guix/import/cpan.scm (string->license): Change the match expression to match on lists, rather than vectors. (module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to hash-ref. (cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to hash-ref*. * tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to a hash table.
2019-08-21import: utils: Add hash-ref*.Christopher Baines
With the change to guile-json version 3, JSON objects are represented as hash tables, rather than alists. The cpan importer uses assoc-ref* on a hash table, so add an equivalent function for hash tables. * guix/import/utils.scm (hash-ref*): New procedure.
2019-08-17import: gnome: Update for Guile-JSON 3.x.Ludovic Courtès
This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d. * guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref' instead of 'hash-ref'. (latest-gnome-release): Match a vector containing an alist, not a hash table. Use 'fold' instead of 'hash-fold' over RELEASES.
2019-08-16import: cran: Support experiment and annotation packages.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable... (bioconductor-packages-list-url): ...with this procedure. (bioconductor-packages-list): Accept optional TYPE argument. (latest-bioconductor-package-version): Same. (fetch-description): Determine package type and use it in calls to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI. (description->package): Pass package type to URI helper procedure; include package type in annotation or experiment packages from Bioconducter.
2019-08-07import: hackage: Update list of ghc-included packages.Robert Vollmert
It turns out the list in the release notes is incomplete. This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3. * guix/import/hackage.scm (ghc-standard-libraries): Update list.
2019-07-25maint: Switch to Guile-JSON 3.x.Ludovic Courtès
Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on until now: it maps JSON dictionaries to alists (instead of hash tables), and JSON arrays to vectors (instead of lists). This commit is about adjusting all the existing code to this new mapping. * m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro. * configure.ac: Use it. * doc/guix.texi (Requirements): Mention the Guile-JSON version. * guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3. * guix/import/cpan.scm (string->license): Expect vectors instead of lists. (module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'. (cpan-fetch): Likewise. * guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list' for DEPS. * guix/import/gem.scm (rubygems-fetch): Likewise. * guix/import/json.scm (json-fetch-alist): Remove. * guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (latest-source-release, latest-wheel-release): Call 'vector->list' on RELEASES. * guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (lts-package-version): Use 'vector->list'. * guix/import/utils.scm (hash-table->alist): Remove. (alist->package): Pass 'vector->list' on the inputs fields, and default to the empty vector. * guix/scripts/import/json.scm (guix-import-json): Remove call to 'hash-table->alist'. * guix/swh.scm (define-json-reader): Expect pair? or null? instead of hash-table?. [extract-field]: Use 'assoc-ref' instead of 'hash-ref'. (json->branches): Use 'map' instead of 'hash-map->list'. (json->checksums): Likewise. (json->directory-entries, origin-visits): Call 'vector->list' on the result of 'json->scm'. * tests/import-utils.scm ("alist->package with dependencies"): New test. * gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3. * gnu/installer.scm (installer-program)[installer-builder]: Likewise. * gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref' instead of 'hash-ref', and pass vectors through 'vector->list'. (iso3166->iso3166-territories): Likewise. * gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3. * guix/docker.scm (manifest, config): Adjust for Guile-JSON 3. * guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3. * guix/import/github.scm (fetch-releases-or-tags): Update docstring. (latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass the result of 'fetch-releases-or-tags' to 'vector->list'. * guix/import/launchpad.scm (latest-released-version): Likewise.
2019-07-02import: pypi: Preserve package name case when forming pypi-uri.Maxim Cournoyer
Fixes <https://bugs.gnu.org/33046>. * guix/build-system/python.scm (pypi-uri): Update the host URI to "files.pythonhosted.org". * guix/import/pypi.scm (make-pypi-sexp): Preserve the package name case when the source URL calls for it.
2019-07-02import: pypi: Include optional test inputs as native-inputs.Maxim Cournoyer
* guix/import/pypi.scm (maybe-inputs): Add INPUT-TYPE argument, and use it. (test-section?): New predicate. (parse-requires.txt): Collect the optional test inputs, and return them as the second element of the returned list. (parse-wheel-metadata): Likewise. (guess-requirements): Adapt. (make-pypi-sexp): Likewise, and include the test inputs requirements as native inputs in the returned package expression. * tests/pypi.scm (test-requires.txt): Include a test section in the test-requires.txt data. (test-requires.txt-beaker): New variable. ("parse-requires.txt"): Adapt. ("parse-requires.txt - Beaker"): New test. ("parse-wheel-metadata, with extras"): Adapt. ("parse-wheel-metadata, with extras - Jedi"): Adapt. ("pypi->guix-package, no wheel"): Re-indent, and add the expected native-inputs. ("pypi->guix-package, wheels"): Likewise.
2019-07-02import: pypi: Completely mute the output of the "unzip" command.Maxim Cournoyer
* guix/import/pypi.scm (guess-requirements): Completely mute the output of the "unzip" command.
2019-07-02import: pypi: Fix typo in docstring.Maxim Cournoyer
* guix/import/pypi.scm (guess-requirements): Fix typo.
2019-07-02import: pypi: Parse wheel METADATA instead of metadata.json.Maxim Cournoyer
With newer Wheel releases, there is no more metadata.json file; the METADATA file should be used instead (see: https://github.com/pypa/wheel/issues/195). This change updates our PyPI importer so that it uses the latter. * guix/import/pypi.scm (define-module): Remove unnecessary modules and export the PARSE-WHEEL-METADATA procedure. (parse-wheel-metadata): Add procedure. (guess-requirements): Use it. * tests/pypi.scm (test-metadata): Test it.
2019-07-02import: pypi: Support more types of archives.Maxim Cournoyer
This change enables the PyPI importer to look for requirements in a source archive of a different type than "tar.gz" or "tar.bz2". Also, scan the source archive to find a requires.txt file. * guix/import/pypi.scm: (guess-requirements)[tarball-directory]: Remove procedure. [guess-requirements-from-source]: Use COMRESSED-FILE? to determine if an archive type is supported, and some file extension logic that chooses either "tar" or "unzip" as the extractor. Search for the requires.txt file in the archive instead of using a static, expected location. (guess-requirements): Rename the TARBALL argument to ARCHIVE, to denote the archive format is no longer bound specifically to the Tar format. (compute-inputs): Likewise. * tests/pypi.scm ("pypi->guix-package, no wheel"): Mock the requires.txt at a non-standard location. ("pypi->guix-package, no usable requirement file."): New test.
2019-07-02import: pypi: Deduplicate requirements.Maxim Cournoyer
* guix/import/pypi.scm (parse-requires.txt): Remove potential duplicates.
2019-07-02import: pypi: Improve parsing of requirement specifications.Maxim Cournoyer
The previous solution was fragile and could leave unwanted characters in a requirement name, such as '[' or ']'. Partially fixes <https://bugs.gnu.org/33047>. * guix/import/pypi.scm (use-modules): Export SPECIFICATION->REQUIREMENT-NAME (%requirement-name-regexp): New variable. (clean-requirement): Rename to... (specification->requirement-name): this, which now uses %requirement-name-regexp to select the requirement name from the requirement specification. (parse-requires.txt): Adapt.
2019-07-02import: pypi: Do not parse optional requirements from source.Maxim Cournoyer
* guix/import/pypi.scm: Export PARSE-REQUIRES.TXT. (clean-requirement): Move procedure to the top level. (guess-requirements): Move the READ-REQUIREMENTS procedure to the top level, and rename it to PARSE-REQUIRES.TXT. Move the CLEAN-REQUIREMENT procedure to the top level. Move the COMMENT? functions inside the PARSE-REQUIRES.TXT procedure. (parse-requires.txt): Add a SECTION-HEADER? predicate, and use it to prevent parsing optional requirements. * tests/pypi.scm (test-requires-with-sections): New variable. ("parse-requires.txt, with sections"): New test.
2019-07-02import: pypi: Do not consider requirements.txt files.Maxim Cournoyer
PyPI packages are mandated to have a setup.py file, which contains a listing of the required dependencies. The setuptools/distutils machinery embed metadata in the archives they produce, which contains this information. There is no need nor gain to collect the requirements from a "requirements.txt" file, as it is not the true record of dependencies for PyPI packages and may contain extraneous requirements or not exist at all. * guix/import/pypi.scm (guess-requirements): Update comment. [guess-requirements-from-source]: Do not attempt to parse the file requirements.txt. Streamline logic. * tests/pypi.scm (test-requires.txt): Rename from test-requirements, to hint at the file being tested. ("pypi->guix-package"): Adapt so that the fake package contains a requires.txt file rather than a requirements.txt file. ("pypi->guix-package, wheels"): Likewise.
2019-06-30guix: import: crate: fix redundant inputs list nestingIvan Petkov
* guix/import/crate.scm (maybe-cargo-inputs): Remove one level of lists. * guix/import/crate.scm (maybe-cargo-development-inputs): Same. * tests/crate.scm: (crate->guix-package)[package]<#:arguments>: Remove one level of list nesting.
2019-06-13import: hackage: Handle Hackage revisions.Robert Vollmert
Hackage packages can have metadata revisions (Cabal file only) that are not reflected in the source archive. The Haskell build system has support for this, but until now the Hackage importer would create a package based on the revised Cabal file which would then build using the old Cabal file. Fixes <https://bugs.gnu.org/35750>. * guix/import/cabal.scm (<cabal-package>): Add 'revision' field. (eval-cabal): Parse 'x-revision:' property. * guix/import/hackage.scm (read-cabal-and-hash): New procedure. (hackage-fetch-and-hash): New procedure. (hackage-fetch): Rewrite using 'hackage-fetch-and-hash'. (hackage-module->sexp): Add 'cabal-hash' argument and use it to populate the '#:cabal-revision' argument. (hackage->guix-package): Use the new '-and-hash' functions to get the hash of the Cabal file and pass it to 'hackage-module->sexp'. * guix/tests/hackage.scm: Test import of Cabal file revision. Signed-off-by: Timothy Sample <samplet@ngyro.com>
2019-06-11import: crate: Define dependencies as arguments.Ivan Petkov
* guix/import/crate.scm: (crate-fetch)[input-crates]: Rename to dev-crates. [native-input-crates]: Rename to dev-dep-crates. [inputs]: Rename to cargo-inputs. [native-inputs]: Rename to cargo-development-inputs. (maybe-cargo-inputs, maybe-cargo-development-inputs, maybe-arguments): Add them. (make-crate-sexp)[inputs]: Rename to cargo-inputs. [native-inputs]: Rename to cargo-development-inputs. [maybe-native-inputs, maybe-inputs]: Replace with maybe-arguments. * guix/import/utils.scm: (package-names->package-inputs): Make public. Add docstring. * tests/crate.scm (crate->guix-package): Update the match pattern. Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-07import: utils: 'specs->package-lists' correctly matches "out".Ludovic Courtès
* guix/import/utils.scm (specs->package-lists): Match "out", not ("out").
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