| Age | Commit message (Expand) | Author |
|---|
| 2017-09-12 | import: cpan: Replace '(package-license perl) with 'perl-license....The perl-license definition is intended to avoid circular dependencies, so
use this as a default when importing packages from CPAN.
* guix/import/cpan.scm (string->license): Replace '(package-license perl) with
'perl-license.
| Christopher Baines |
| 2017-07-24 | import: cpan: Updater returns a list of URLs....* guix/import/cpan.scm (latest-release): Return a list in the 'urls'
field of 'upstream-source'.
| Ludovic Courtès |
| 2017-06-26 | import cran: Generate a valid 'license' field for "GPL"....Fixes <http://bugs.gnu.org/27294>.
Reported by Joshua Sierles <joshua@joshua.si>.
* guix/import/cran.scm (string->license) <"GPL">: Return a quoted list.
| Ludovic Courtès |
| 2017-06-15 | guix: Add texlive importer....* guix/import/texlive.scm: New file.
* guix/scripts/import/texlive.scm: New file.
* Makefile.am (MODULES): Add them.
* tests/texlive.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/scripts/import.scm (importers): Add texlive importer.
* doc/guix.texi (Invoking guix import): Document it.
| Ricardo Wurmus |
| 2017-06-15 | import: pypi: Always use pypi.io URL with downcased package name....* guix/import/pypi.scm (make-pypi-sexp): Always use pypi.io URL with
downcased package name.
| Danny Milosavljevic |
| 2017-06-07 | import: cpan: Update CPAN importer to use MetaCPAN v1 API....* guix/import/cpan.scm (module->dist-name, cpan-fetch): Use metacpan.org
URLs.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| James Richardson |
| 2017-05-16 | import cran: Check if pkg-config is needed....* guix/import/cran.scm (needs-pkg-config?): New procedure.
(description->package): Use it.
| Ricardo Wurmus |
| 2017-05-16 | import cran: Refactor "needs-zlib?"....* guix/import/cran.scm (tarball-files-match-pattern?): New procedure.
(needs-zlib?): Implement in terms of "tarball-files-match-pattern?".
| Ricardo Wurmus |
| 2017-05-16 | import cran: Export package predicates....* guix/import/cran.scm (cran-package?, bioconductor-package?,
bioconductor-data-package?, bioconductor-experiment-package?): Export
procedures.
| Ricardo Wurmus |
| 2017-05-16 | import cran: Add predicate for Bioconductor experiment packages....* guix/import/cran.scm (bioconductor-experiment-package?): New variable.
| Ricardo Wurmus |
| 2017-05-16 | import cran: Exclude experiment packages in predicate "bioconductor-package?"....* guix/import/cran.scm (bioconductor-package?): Exclude experiment packages,
because they cannot be updated with the default bioconductor updater.
| Ricardo Wurmus |
| 2017-05-16 | import cran: Fetch DESCRIPTION files from Github mirror....* guix/import/cran.scm (%bioconductor-svn-url): Remove variable.
(bioconductor-mirror-url): New procedure.
(fetch-description): Take a REPOSITORY symbol instead of a BASE-URL string.
(cran->guix-package): Pass REPOSITORY symbol to "fetch-description".
(latest-cran-release, latest-bioconductor-release): Adjust accordingly.
(bioconductor-package?): Update comment about SVN.
| Ricardo Wurmus |
| 2017-05-13 | import: pypi: Robustify latest-release....* guix/import/pypi.scm (latest-release): Check if pypi-fetch has
failed. If so return #f, else construct the <upstream-source>.
| Mathieu Othacehe |
| 2017-05-13 | import: cran: Robustify cran-package?....* guix/import/cran.scm (package->upstream-name): Return #f if url
start and end index could not be determined.
(cran-package?): Check if the upstream-name can be extracted from
given package.
* tests/cran.scm: Add "r-minimal is not a cran package" to make sure that
r-minimal is not detected as a cran package.
This fixes a failure of guix refresh on r-minimal because no
upsteam-name can be determined from ".../R-version.tar.gz" uri.
| Mathieu Othacehe |
| 2017-05-03 | ui: Rename '_' to 'G_'....This avoids collisions with '_' when the latter is used as a 'match'
pattern for instance. See
<https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00464.html>.
* guix/ui.scm: Rename '_' to 'G_'.
* po/guix/Makevars (XGETTEXT_OPTIONS): Adjust accordingly.
* build-aux/compile-all.scm (warnings): Remove 'format'.
* gnu/packages.scm,
gnu/services.scm,
gnu/services/shepherd.scm,
gnu/system.scm,
gnu/system/shadow.scm,
guix/gnupg.scm,
guix/http-client.scm,
guix/import/cpan.scm,
guix/import/elpa.scm,
guix/import/pypi.scm,
guix/nar.scm,
guix/scripts.scm,
guix/scripts/archive.scm,
guix/scripts/authenticate.scm,
guix/scripts/build.scm,
guix/scripts/challenge.scm,
guix/scripts/container.scm,
guix/scripts/container/exec.scm,
guix/scripts/copy.scm,
guix/scripts/download.scm,
guix/scripts/edit.scm,
guix/scripts/environment.scm,
guix/scripts/gc.scm,
guix/scripts/graph.scm,
guix/scripts/hash.scm,
guix/scripts/import.scm,
guix/scripts/import/cpan.scm,
guix/scripts/import/cran.scm,
guix/scripts/import/crate.scm,
guix/scripts/import/elpa.scm,
guix/scripts/import/gem.scm,
guix/scripts/import/gnu.scm,
guix/scripts/import/hackage.scm,
guix/scripts/import/nix.scm,
guix/scripts/import/pypi.scm,
guix/scripts/import/stackage.scm,
guix/scripts/lint.scm,
guix/scripts/offload.scm,
guix/scripts/pack.scm,
guix/scripts/package.scm,
guix/scripts/perform-download.scm,
guix/scripts/publish.scm,
guix/scripts/pull.scm,
guix/scripts/refresh.scm,
guix/scripts/size.scm,
guix/scripts/substitute.scm,
guix/scripts/system.scm,
guix/ssh.scm,
guix/upstream.scm: Use 'G_' instead of '_'. Most of this change was
obtained by running: "sed -i -e's/(_ "/(G_ "/g' `find -name \*.scm`".
| Ludovic Courtès |
| 2017-04-28 | import: Update Bioconductor release to 3.5....* guix/import/cran.scm: Change Bioconductor release to 3.5.
| Roel Janssen |
| 2017-04-05 | import cran: Distinguish Bioconductor data packages....* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor
data packages.
(bioconductor-data-package?): New procedure.
| Ricardo Wurmus |
| 2017-03-28 | Replace (compose not PROC) with simpler idioms....* gnu/packages/bioinformatics.scm (python-pysam)[arguments] <check>:
Use (negate proc) instead of (compose not proc).
* guix/import/cran.scm (recursive-import): Likewise.
* guix/import/elpa.scm (filter-dependencies): Use 'remove' instead of
'(filter (compose not proc) ...)'.
| Ludovic Courtès |
| 2017-03-28 | import cran: Automatically add gfortran and zlib when needed....* guix/import/cran.scm (needs-fortran?, needs-zlib?): New procedures.
(description->package): Use them.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r: Do not build recommended packages....* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
| Ricardo Wurmus |
| 2017-03-16 | utils: Move base16 procedures to (guix base16)....* guix/utils.scm (bytevector->base16-string, base16-string->bytevector):
Move to...
* guix/base16.scm: ... here. New file.
* tests/utils.scm ("bytevector->base16-string->bytevector"): Move to...
* tests/base16.scm: ... here. New file.
* Makefile.am (MODULES): Add guix/base16.scm.
(SCM_TESTS): Add tests/base16.scm.
* build-aux/download.scm, guix/derivations.scm,
guix/docker.scm, guix/import/snix.scm, guix/pk-crypto.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/store.scm, tests/hash.scm,
tests/pk-crypto.scm: Adjust imports accordingly.
| Ludovic Courtès |
| 2017-02-14 | import: stackage: Avoid using (guix ui) in importer code....* guix/import/stackage.scm (stackage->guix-package, stackage-lts-info-fetch):
Raise 'message' condition instead of using 'leave' from (guix ui).
* guix/scripts/import/stackage.scm (guix-import-stackage): Handle conditions.
| Federico Beffa |
| 2017-02-09 | import: hackage: Handle unknown packages gracefully....* guix/import/hackage.scm (hackage-fetch): Add 'guard'.
| Federico Beffa |
| 2017-02-09 | import: Add stackage importer and updater....* guix/import/stackage.scm: New file.
* guix/scripts/import/stackage.scm: New file.
* Makefile.am (MODULES): Add new files.
* guix/scripts/import.scm (importers): Add "stackage".
* guix/scripts/refresh.scm (%updaters): Add %stackage-updater.
* doc/guix.texi (Invoking 'guix import'): Document the importer.
(Invoking 'guix refresh'): Add stackage to option --type valid values.
* guix/import/hackage.scm (guix-package->hackage-name, hackage-fetch,
hackage-source-url, hackage-cabal-url, hackage-package?): Export them.
| Federico Beffa |
| 2017-02-09 | import: json: Explicitly ask for JSON data....* guix/import/json.scm (json-fetch): Add #:headers to http-fetch call.
| Federico Beffa |
| 2017-02-08 | import: pypi: Correctly handle multiple-URL origins....Fixes <https://bugs.gnu.org/25635>.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.
* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
| Ludovic Courtès |
| 2017-01-28 | Add (guix memoization)....* guix/combinators.scm (memoize): Remove.
* guix/memoization.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
guix/build-system/gnu.scm, guix/build-system/python.scm,
guix/derivations.scm, guix/gnu-maintenance.scm,
guix/import/cran.scm, guix/import/elpa.scm,
guix/modules.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/store.scm, guix/utils.scm: Adjust imports accordingly.
| Ludovic Courtès |
| 2017-01-28 | import: github: Better tolerate unexpected file extensions....* guix/import/github.scm (find-extension): Add ".tbz".
(updated-github-url): When 'find-extension' returns #f, use "" for EXT.
| Ludovic Courtès |
| 2017-01-26 | import: pypi: Don't add setuptools to propagated-inputs....* guix/import/pypi.scm (compute-inputs): Don't add setuptools to the imported
package's propagated-inputs.
| Carlo Zancanaro |
| 2017-01-19 | import: github: Catch HTTP 403 error during fetch....* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
raised if a github token has not been set.
Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Mathieu OTHACEHE |
| 2017-01-13 | http-client: Provide 'User-Agent' header by default....* guix/http-client.scm (http-fetch): Add #:headers parameter and honor
it. Rename 'auth-header' to 'headers'.
* guix/import/github.scm (json-fetch*): Add comment about required
User-Agent.
| Ludovic Courtès |
| 2017-01-13 | import: github: Fix regression on the /releases retrieval....Fixes a regression introduced in
62bd24db39a86f80242f923eb4cc2f18f3b02c67, which introduced a call to
'hash-table->alist'.
* guix/import/github.scm (json-fetch*): New procedure.
(latest-released-version): Use it.
| Ludovic Courtès |
| 2017-01-01 | build-system: cargo: Handle Cargo.lock file not present....* guix/build-system/cargo.scm (cargo-build): Add src output.
(private-keywords): Add #:outputs.
* guix/build/cargo-build-system.scm (configure): Use /share/rust-source
when replacing inputs.
(build, check): Don't do anything when there isn't a Cargo.lock file
present.
(install): Install sources to src output. When a Cargo.lock file is
present use cargo install to install binaries to out.
* guix/import/crate.scm (make-crate-sexp): Importer uses the src output
for crate inputs by default.
* guix/import/utils.scm (package-names->package-inputs, maybe-inputs,
maybe-native-inputs): Take an optional output argument.
* tests/crate.scm (crate->guix-package test): Update.
Problem reported by Francisco Gómez García <espectalll@kydara.com>.
| David Craven |
| 2017-01-01 | import: crate: Provide a default home-page value....* guix/import/crate.scm (make-crate-sexp): Provide a default home-page
value.
* tests/crate.scm (test-crate): Add repository field.
Problem reported by ng0 <ng0@libertad.pw>.
| David Craven |
| 2016-12-29 | import: elpa: Import dependencies as propagated-inputs...* guix/import/elpa.scm (elpa-package->sexp): Import dependencies as
propagated-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlo Zancanaro |
| 2016-12-29 | import: elpa: Fix call-with-downloaded-file...* guix/import/elpa.scm (call-with-downloaded-file): Make function behaviour
match documentation string.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlo Zancanaro |
| 2016-12-20 | import: github: Use 'json-fetch'....* guix/import/github.scm (json-fetch*): Remove.
(latest-released-version): Adjust accordingly.
| Ludovic Courtès |
| 2016-12-20 | import: pypi: Match new 'pypi-uri' domain in updater....* guix/import/pypi.scm (pypi-package?): Match pypi.io domain.
| Marius Bakke |
| 2016-12-17 | import cran: Handle HTTP errors....Fixes <http://bugs.gnu.org/23479>.
* guix/import/cran.scm (fetch-description): Return #f in case of HTTP
errors.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Add recursive importer....* guix/import/cran.scm (recursive-import): New variable.
(cran->guix-package): Memoize the procedure.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Ignore default R packages....* guix/import/cran.scm (default-r-packages): New variable.
(description->package): Drop default R packages from list of inputs.
| Ricardo Wurmus |
| 2016-12-17 | import cran: description->package: Also return package dependencies....* guix/import/cran.scm (description->package): Return package
dependencies in addition to generated package expression.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Move guix-name to top-level....* guix/import/cran.scm (guix-name): Move to top-level.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Remove more invalid characters from package names....* guix/import/cran.scm (guix-name): Replace period and underscore with
dash; always prepend package names with "r-".
| Ricardo Wurmus |
| 2016-12-17 | import cran: Handle BSD licenses with LICENSE file....* guix/import/cran.scm (string->license): Add cases for BSD licenses
with LICENSE file.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Translate MIT to the Expat license....* guix/import/cran.scm (string->license): Translate "MIT" license to
Expat license.
| Ricardo Wurmus |
| 2016-12-17 | import cran: Do not use "or later" licenses by default....* guix/import/cran.scm (string->license): Use exact license versions.
| Ricardo Wurmus |
| 2016-12-14 | import: Add updater for rust crates....* guix/import/crate.scm (crate-package?, latest-release,
%crate-updater): New variables.
* guix/scripts/refresh.scm (%updaters): Add crate updater.
* doc/guix.texi: Add crate updater to table.
| David Craven |
| 2016-12-14 | import: Add importer for rust crates....* guix/import/crate.scm: New file.
* guix/scripts/import/crate.scm: New file.
* guix/scripts/import.scm (importers): Add crate importer.
* tests/crate.scm: New file.
* doc/guix.texi: Add crate importer to table.
* Makefile.am (MODULES, SCM_TESTS): Add files.
| David Craven |
| 2016-12-14 | import: utils: Add some utilities....* guix/import/utils.scm (maybe-inputs, maybe-native-inputs,
package->definition): New variables.
| David Craven |
