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* guix/import/cran.scm (needs-knitr?): New procedure.
(description->package): Use it.
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* guix/import/pypi.scm (string->license): Add the BSD 2-clause and MPL 2.0
licenses, and add more strings for BSD 3-clause and Expat license.
Signed-off-by: Leo Famulari <leo@famulari.name>
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Fixes <https://bugs.gnu.org/39511>.
The "access_token" query parameter is now deprecated:
https://developer.github.com/changes/2019-11-05-deprecated-passwords-and-authorizations-api/#authenticating-using-query-parameters
* guix/import/github.scm (fetch-releases-or-tags)[headers]: Add
"Authorization" header when (%github-token) is true.
[decorate]: Remove, and remove callers.
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* guix/import/pypi.scm (make-pypi-sexp): Rename test-inputs to
native-inputs. Restructure the way pypi-uri parameters are generated.
Use pypi-uri's extension parameter when required. Add "unzip" to
native inputs when the package source is a zip file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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Fixes <https://bugs.gnu.org/39404>.
Reported by Seth <lee.seth@tuta.io>.
* guix/import/gem.scm (<gem>)[licenses]: Adjust for non-vector
licenses.
* tests/gem.scm (test-bar-json): Change "licenses" to 'null'.
("gem-recursive-import"): Adjust accordingly.
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* guix/import/gem.scm (<gem>, <gem-dependencies>, <gem-dependency>): New
record types with JSON mapping.
(json->gem-dependencies): New procedures.
(rubygems-fetch): Use it.
(hex-string->bytevector): Remove.
(make-gem-sexp): Expect HASH to be a bytevector.
(gem->guix-package): Adjust to use the new <gem> data type instead of an
alist.
(latest-release): Likewise.
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* guix/import/texlive.scm (fetch-sxml, sxml->package): Export.
* tests/texlive.scm <top level>: Call '%http-server-port'.
("fetch-sxml: returns SXML for valid XML"): Use 'with-http-server' and
set 'current-http-proxy' instead of using 'mock'.
("sxml->package"): Remove use of '@@'.
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* guix/import/opam.scm (string-pat, multiline-string, list-pat)
(dict, condition): Export.
(opam-fetch): Add optional 'repository' parameter.
(opam->guix-package): Add #:repository parameter and pass it to
'opam-fetch'.
* tests/opam.scm ("opam->guix-package"): Remove use of 'mock' and pass
TEST-REPO to 'opam->guix-package' instead.
("parse-strings", "parse-multiline-strings")
("parse-lists", "parse-dicts", "parse-conditions"): Remove uses of '@@',
which are no longer needed.
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* guix/import/elpa.scm (elpa-url): Add 'gnu/http'.
(elpa->guix-package): Handle it.
* tests/elpa.scm (elpa-package-info-mock, auctex-readme-mock)
(elpa-version->string, package-source-url, ensure-list)
(package-home-page, make-elpa-package): Remove.
<top level>: Call '%http-server-port'.
(eval-test-with-elpa): Remove uses of 'mock'. Use 'with-http-server'
and parameterize 'current-http-proxy' instead.
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* guix/import/cran.scm (description->alist, description->package): Export.
<top level>: Set! 'listify'.
* tests/cran.scm (description-alist, "description->package"): Remove use
of '@@' to access the relevant bindings.
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* guix/import/crate.scm (string->license): Export.
* tests/crate.scm (string->license): Remove.
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* guix/import/cpan.scm (%metacpan-base-url): New variable.
(module->dist-name, cpan-fetch): Refer to it instead of the hard-coded URL.
* tests/cpan.scm ("cpan->guix-package"): Use 'with-http-server' instead
of 'mock'.
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* guix/import/cpan.scm (<cpan-dependency>, <cpan-release>): New
JSON-mapped record types.
(metacpan-url->mirror-url): New procedure.
(cpan-source-url): Rewrite in terms of it.
(cpan-version): Remove.
(cpan-module->sexp): Rewrite to take a <cpan-release> instead of an
alist, and rename 'meta' to 'release'.
[convert-inputs]: Rewrite to use 'cpan-release-dependencies'.
Update calls to 'convert-inputs' to pass a list of symbols.
Replace 'assoc-ref' calls with the appropriate field accessors.
(cpan->guix-package): Rename 'module-meta' to 'release'.
(latest-release): Likewise, and use the appropriate accessors.
* tests/cpan.scm (test-json): Remove "prereqs" record; add "dependency"
list.
("source-url-http", "source-url-https"): Remove.
("metacpan-url->mirror-url, http")
("metacpan-url->mirror-url, https"): New tests.
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Fixes <https://bugs.gnu.org/38836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/import/cran.scm (bioconductor-packages-list): Close the port
returned by 'http-fetch/cached'.
(fetch-description): Likewise.
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Fixes <https://bugs.gnu.org/38709>.
Reported by Valentin Ignatev <valentignatev@gmail.com>.
* guix/import/crate.scm (crate-recursive-import): Add optional 'version'
parameter and honor it.
* guix/scripts/import/crate.scm (guix-import-crate): Pass VERSION as 2nd
argument to 'crate-recursive-import'.
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* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
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* guix/import/cran.scm (string->license): Add case for lgpl2.1+.
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This is a followup to 70a8e13277d4a44b89dd9ee2290b98105f0235f1.
* guix/import/utils.scm (recursive-import): Update docstring.
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* guix/import/crate.scm (%dual-license-rx): Removed function.
(crate->guix-package): Handle most of the multi-licensing cases.
* tests/crate.scm (licenses): Add tests for some licenses.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/utils.scm (recursive-import): Remove 'list->stream' call.
* guix/scripts/import/cran.scm (guix-import-cran): Remove 'stream->list'
call.
* guix/scripts/import/crate.scm (guix-import-crate): Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa): Likewise.
* guix/scripts/import/gem.scm (guix-import-gem): Likewise.
* guix/scripts/import/hackage.scm (guix-import-hackage): Likewise.
* guix/scripts/import/opam.scm (guix-import-opam): Likewise.
* guix/scripts/import/pypi.scm (guix-import-pypi): Likewise.
* guix/scripts/import/stackage.scm (guix-import-stackage): Likewise.
* tests/gem.scm ("gem-recursive-import"): Likewise.
* tests/import-utils.scm ("recursive-import"): Likewise.
Co-authored-by: Brian Leung <bkleung89@gmail.com>
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* guix/import/utils.scm (topological-sort): New procedure.
(recursive-import): Rewrite to use it.
* tests/import-utils.scm ("recursive-import"): New test.
* guix/import/cran.scm (cran->guix-package): Always return two values.
* guix/scripts/import/cran.scm (guix-import-cran): Remove 'reverse' call
on 'cran-recursive-import' result.
* guix/scripts/import/crate.scm (guix-import-crate): Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa): Likewise.
* guix/scripts/import/gem.scm (guix-import-gem): Likewise.
* guix/scripts/import/hackage.scm (guix-import-hackage): Likewise.
* guix/scripts/import/opam.scm (guix-import-opam): Likewise.
* guix/scripts/import/pypi.scm (guix-import-pypi): Likewise.
* guix/scripts/import/stackage.scm (guix-import-stackage): Likewise.
* tests/gem.scm ("gem-recursive-import"): Change the order of package
expressions accordingly.
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* guix/import/opam.scm: Detect dune projects from dependencies, then
filter dune from dependencies.
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* guix/import/opam.scm: Allow line breaks in strings.
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This fixes "guix import texlive translator".
* guix/import/texlive.scm (sxml->package): Add clause for when 'license'
is a list of licences, as is the case with the "translator" package.
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* gnu/package/haskell.scm (ghc-8): Change to 'ghc-8.6'.
* guix/import/hackage.scm (ghc-standard-libraries): Add 'ghc-heap'
and 'libiserv'.
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* guix/import/crate.scm (crate-recursive-import): New procedure.
(crate->guix-package): Return dependencies as a second value.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/stackage: Fix spelling of "version".
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* guix/import/github.scm (latest-released-version): Allow the
version string to begin with the word 'version'.
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This is a followup to a5376200541abf8245973e601be246bf65b8b6c7.
Since that commit, 'pypi-package?' would return false for most Python
packages, and thus "guix refresh python-xxx" would report that no
updaters apply to the package.
* guix/import/pypi.scm (pypi-package?)[pypi-url?]: Recognize
"files.pythonhosted.org" URLs.
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* guix/import/cran.scm (%bioconductor-version): Export it.
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* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
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Fixes <http://issues.guix.gnu.org/issue/30345> and
finally fixes <http://issues.guix.gnu.org/issue/25020>.
Formerly packages living in a path like
/stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz
have not been found.
* guix/import/kde.scm (uri->kde-path-pattern): New procedure.
(latest-kde-release): Use pattern to search for file.
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As it was done for (guix import gnome).
* guix/import/kde.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri)
(download.kde.org-files) (latest-kde-release): Remove.
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* guix/import/crate.scm (crate->guix-package): Add optional 'version'
argument and honor it.
* guix/scripts/import/crate.scm (guix-import-crate): Assume the first
argument is a spec and destructure it with
'package-name->name+version'. Pass both to 'crate->guix-package'.
* doc/guix.texi (Invoking guix import): Document it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d.
Since that commit, when /releases returned an empty JSON array, we would
not fall back to /tags because of the incorrect match.
* guix/import/github.scm (fetch-releases-or-tags): Match the empty
vector instead of the empty list.
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* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs.
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* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers.
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* guix/import/crate.scm (%dual-license-rx): New variable.
(crate->guix-package)[string->license]: Rewrite to match it.
* tests/crate.scm (test-crate): Adjust "license" field to current
practice.
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This provides a clean separation between bindings to the
https://crates.io/api/v1 API and actual conversion to Guix package
sexps.
As a side-effect, it fixes things like "guix import blake2-rfc", "guix
refresh -t crates", etc.
* guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>):
New record types.
(lookup-crate, crate-version-dependencies): New procedures.
(crate-fetch): Remove.
(crate->guix-package): Rewrite to use the new API.
(latest-release): Likewise.
* guix/build-system/cargo.scm (%crate-base-url): New variable.
* tests/crate.scm (test-crate): Update accordingly.
fixlet
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* guix/import/cran.scm (fetch-description): Abort if the argument does not
look like a URL.
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* guix/import/cran.scm (cran->guix-package): Retry failed git imports on
Bioconductor.
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* guix/import/cran.scm (vcs-file?): New procedure.
(download): Support downloading from git.
(fetch-description): Add a clause for the 'git repository type.
(files-match-pattern?): New procedure.
(tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?.
(directory-needs-fortran?, directory-needs-zlib?,
directory-needs-pkg-config?): New procedures.
(needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures...
(tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?):
...to this, and use them.
(file-hash): New procedure.
(description->package): Handle the 'git repository type.
* guix/import/utils.scm (package->definition): Handle package expression
inside of a let.
* guix/scripts/import.scm (guix-import): Handle let expressions.
* doc/guix.texi (Invoking guix import): Document it.
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* guix/import/github.scm (updated-github-url): Use
'package-upstream-name' instead of 'package-name'. This allows
'github-package?' to match more packages, given an appropriate upstream
name.
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This reverts commit 8a3b11d1eb21e54b4f3a3cbceffed8ce2c11512e.
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This reverts commit 01ce7af25add55514f737af48ea6c127bedfde67.
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In guile-json version 3, JSON objects are represented as hash tables, rather
than alists.
* guix/import/cpan.scm (string->license): Change the match expression to match
on lists, rather than vectors.
(module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to
hash-ref.
(cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to
hash-ref*.
* tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to
a hash table.
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With the change to guile-json version 3, JSON objects are represented as hash
tables, rather than alists. The cpan importer uses assoc-ref* on a hash table,
so add an equivalent function for hash tables.
* guix/import/utils.scm (hash-ref*): New procedure.
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This is a followup to 81c3dc32244a17241d74eea9fa265edfcb326f6d.
* guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref'
instead of 'hash-ref'.
(latest-gnome-release): Match a vector containing an alist, not a hash
table. Use 'fold' instead of 'hash-fold' over RELEASES.
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* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable...
(bioconductor-packages-list-url): ...with this procedure.
(bioconductor-packages-list): Accept optional TYPE argument.
(latest-bioconductor-package-version): Same.
(fetch-description): Determine package type and use it in calls to
LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(description->package): Pass package type to URI helper procedure; include
package type in annotation or experiment packages from Bioconducter.
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It turns out the list in the release notes is incomplete.
This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3.
* guix/import/hackage.scm (ghc-standard-libraries): Update list.
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