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2021-05-09Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/local.mk gnu/packages/bioinformatics.scm gnu/packages/django.scm gnu/packages/gtk.scm gnu/packages/llvm.scm gnu/packages/python-web.scm gnu/packages/python.scm gnu/packages/tex.scm guix/build-system/asdf.scm guix/build/emacs-build-system.scm guix/profiles.scm
2021-05-08weather: '--display-missing' shows the system type of missing items.Ludovic Courtès
* guix/scripts/weather.scm (store-item-system): New procedure. (report-server-coverage): Use it to print the system type of each missing item.
2021-04-29download: Use Disarchive as a last resort.Timothy Sample
This is a fixed version of 66b14dccdd0d83c875ce3a8d50ceab8b6f0a3ce2, which was reverted in e74250c3c535b75dd2225a26df51febb7ed94654. * guix/download.scm (%disarchive-mirrors): New variable. (%disarchive-mirror-file): New variable. (built-in-download): Add 'disarchive-mirrors' keyword argument and pass its value along to the 'builtin:download' derivation. (url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'. * guix/scripts/perform-download.scm (perform-download): Read Disarchive mirrors from the environment and pass them to 'url-fetch'. * guix/build/download.scm (disarchive-fetch/any): New procedure. (url-fetch): Add 'disarchive-mirrors' keyword argument, use it to make a list of URIs, and use the new procedure to fetch the file if all other methods fail. * build-aux/build-self.scm (build-program)[select?]: Exclude '(guix build download)'. * guix/self.scm (compiled-guix)[*core-modules*]: Add 'guile-json' to the list of extensions.
2021-04-28Revert "download: Use Disarchive as a last resort."Timothy Sample
This reverts commit 66b14dccdd0d83c875ce3a8d50ceab8b6f0a3ce2, which broke 'guix pull'.
2021-04-27download: Use Disarchive as a last resort.Timothy Sample
* guix/download.scm (%disarchive-mirrors): New variable. (%disarchive-mirror-file): New variable. (built-in-download): Add 'disarchive-mirrors' keyword argument and pass its value along to the 'builtin:download' derivation. (url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'. * guix/scripts/perform-download.scm (perform-download): Read Disarchive mirrors from the environment and pass them to 'url-fetch'. * guix/build/download.scm (disarchive-fetch/any): New procedure. (url-fetch): Add 'disarchive-mirrors' keyword argument, use it to make a list of URIs, and use the new procedure to fetch the file if all other methods fail.
2021-04-25http-client, substitute: Gracefully handle GnuTLS EAGAIN/EINTR.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/47867>. Reported by Florian Pelz <pelzflorian@pelzflorian.de>. In GnuTLS up to 3.7.1 included, GNUTLS_E_AGAIN and GNUTLS_E_INTERRUPTED are not handled by 'write_to_session_record_port' and could be thrown at the caller. This patch works around that by dropping connections altogether and restarting when this happens. * guix/http-client.scm (false-if-networking-error): Swallow ERROR/AGAIN and ERROR/INTERRUPTED. * guix/scripts/substitute.scm (call-with-cached-connection): Likewise.
2021-04-25import: Remove Nix importer.Ludovic Courtès
This importer has suffered from bitrot and no longer works with current Nix and Nixpkgs. See <https://bugs.gnu.org/32339> and <https://bugs.gnu.org/36255>. * guix/import/snix.scm, guix/scripts/import/nix.scm, tests/snix.scm: Remove. * Makefile.am (MODULES, SCM_TESTS): Remove them. * guix/scripts/import.scm (importers): Remove "nix". * build-aux/test-env.in: Remove NIXPKGS variable. * configure.ac: Remove '--with-nixpkgs' option. * doc/guix.texi (Invoking guix import): Remove bit about "guix import nix". * etc/completion/fish/guix.fish: Likewise.
2021-04-24http-client, substitute: Gracefully handle GnuTLS EAGAIN/EINTR.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/47867>. Reported by Florian Pelz <pelzflorian@pelzflorian.de>. In GnuTLS up to 3.7.1 included, GNUTLS_E_AGAIN and GNUTLS_E_INTERRUPTED are not handled by 'write_to_session_record_port' and could be thrown at the caller. This patch works around that by dropping connections altogether and restarting when this happens. * guix/http-client.scm (false-if-networking-error): Swallow ERROR/AGAIN and ERROR/INTERRUPTED. * guix/scripts/substitute.scm (call-with-cached-connection): Likewise.
2021-04-20import: Remove Nix importer.Ludovic Courtès
This importer has suffered from bitrot and no longer works with current Nix and Nixpkgs. See <https://bugs.gnu.org/32339> and <https://bugs.gnu.org/36255>. * guix/import/snix.scm, guix/scripts/import/nix.scm, tests/snix.scm: Remove. * Makefile.am (MODULES, SCM_TESTS): Remove them. * guix/scripts/import.scm (importers): Remove "nix". * build-aux/test-env.in: Remove NIXPKGS variable. * configure.ac: Remove '--with-nixpkgs' option. * doc/guix.texi (Invoking guix import): Remove bit about "guix import nix". * etc/completion/fish/guix.fish: Likewise.
2021-04-16Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
Conflicts: gnu/local.mk gnu/packages/boost.scm gnu/packages/chez.scm gnu/packages/compression.scm gnu/packages/crates-io.scm gnu/packages/docbook.scm gnu/packages/engineering.scm gnu/packages/gcc.scm gnu/packages/gl.scm gnu/packages/gtk.scm gnu/packages/nettle.scm gnu/packages/python-check.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/rust.scm gnu/packages/sqlite.scm guix/build-system/node.scm
2021-04-11scripts: system: Default to -v3 when building a system.Mark H Weaver
This is a followup to 8f9052d5434a3a11e7b4ff14d6b0090256e08aa4. * guix/scripts/system.scm (verbosity-level): Change the default from 2 to 3 when building a system.
2021-04-09import: go: Append version to symbol name in the pinned version mode.Maxim Cournoyer
This allows importing packages with complicated version specific dependency chains without the package symbol names colliding. * doc/guix.texi (Invoking guix import): Document the --pin-versions option. Mention that a specific version can be imported. Remove the experimental warning. * guix/import/go.scm (go-module->guix-package-name)[version]: Add optional argument. Rewrite the character translation in terms of string-map. (go-module->guix-package): Conditionally use dependencies whose symbol include their version, based no the value of the PIN-VERSIONS? argument. * guix/import/utils.scm (package->definition): Add a new case where the full version string is appended to the package symbol. * guix/scripts/import.scm (guix-import): Correctly print forms starting with '(define-public [...]'. * guix/scripts/import/go.scm (guix-import-go): Conditionally include the version in the package symbols defined.
2021-04-09import: go: Add an option to use pinned versions.Maxim Cournoyer
The ability to pin versions is handy when having to deal to packages that bootstrap themselves through a chain of former versions. Not using pinned versions in these case could introduce dependency cycles. * guix/build-system/go.scm (guix) (%go-version-rx): Rename to... (%go-pseudo-version-rx): ... this. Simplify the regular expression, which in turns makes it more robust. * guix/build-system/go.scm (go-version->git-ref): Adjust following the above rename. (go-pseudo-version?): New predicate. (go-module-latest-version): Rename to ... (go-module-version-string): ... this. Rename goproxy-url argument to just goproxy. Add a VERSION keyword argument, update docstring and adjust to have it used. (go-module-available-versions): New procedure. (%go.mod-require-directive-rx): Document regexp. (parse-go.mod): Harmonize the way dependencies are recorded to a list of lists rather than a list of pairs, as done for other importers. Rewrite to directly pass multiple values rather than a record object. Filter the replaced modules in a functional style. (go-module->guix-package): Add docstring. [version, pin-versions?]: New arguments. Rename the GOPROXY-URL argument to GOPROXY. Adjust to the new returned value of fetch-go.mod, which is a string. Fail when the provided version doesn't exist. Return a list dependencies and their versions when in pinned versions mode, else just the dependencies. (go-module-recursive-import)[version, pin-versions?]: New arguments. Honor the new arguments and guard against network errors. * guix/scripts/import/go.scm (%default-options): Register a default value for the goproxy argument. (show-help): Document that a version can be specified. Remove the --version argument and add a --pin-versions argument. (%options)[version]: Remove option. [pin-versions]: Add option. (guix-import-go): Adjust so the version provided from the module name is honored, along the new pin-versions? argument. * tests/go.scm: Adjust and add new tests.
2021-04-09daemon: 'guix substitute' replies on FD 4.Ludovic Courtès
This avoids the situation where error messages would unintentionally go to stderr and be wrongfully interpreted as a reply by the daemon. Fixes <https://bugs.gnu.org/46362>. This is a followup to ee3226e9d54891c7e696912245e4904435be191c. * guix/scripts/substitute.scm (display-narinfo-data): Add 'port' parameter and honor it. (process-query): Likewise. (process-substitution): Likewise. (%error-to-file-descriptor-4?, with-redirected-error-port): Remove. (%reply-file-descriptor): New variable. (guix-substitute): Remove use of 'with-redirected-error-port'. Define 'reply-port' and pass it to 'process-query' and 'process-substitution'. * nix/libstore/build.cc (SubstitutionGoal::handleChildOutput): Swap 'builderOut' and 'fromAgent'. * nix/libstore/local-store.cc (LocalStore::getLineFromSubstituter): Likewise. * tests/substitute.scm <top level>: Set '%reply-file-descriptor' rather than '%error-to-file-descriptor-4?'.
2021-04-01scripts: show: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/show.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: search: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/search.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: repl: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/repl.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: publish: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/publish.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: edit: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/edit.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: download: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/download.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: discover: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/discover.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-01scripts: describe: Replace 'args-fold*' by 'parse-command-line'.zimoun
* guix/scripts/describe.scm (define-command): Replace 'args-fold*' by 'parse-command-line'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-31scripts: Scripts that defaulted to -v2 now default to -v3.Ludovic Courtès
This is a followup to e45ef9a648c155c35b51e6b15049a1bd5416f0a1. * guix/scripts/archive.scm (%default-options): Change 'verbosity' to 3. * guix/scripts/build.scm (%default-options): Likewise. * guix/scripts/copy.scm (%default-options): Likewise.
2021-03-31substitute: Emit a single newline upon completion.Ludovic Courtès
The immediate effect is that, with '--verbosity=1', only two lines are displayed for each substitute, instead of two lines followed by an empty line. * guix/scripts/substitute.scm (process-substitution): Emit a single newline upon completion when PRINT-BUILD-TRACE? is true.
2021-03-29scripts: import: cran: Add missing help for 'style' option.zimoun
* guix/scripts/import/cran.scm (show-help): Add help message for 'style' option. Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-29Fix substitutes server discovery.Mathieu Othacehe
This is a follow-up of bc3896db25c788c181c7bcd65754e7cd378e9d9f. * guix/scripts/substitute.scm (%local-substitute-urls): Test for "true" instead of "yes".
2021-03-24Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2021-03-21substitute: Choose compression method based on past CPU usage.Ludovic Courtès
This stems from the observation that substitute download can be CPU-bound when high-speed networks are in use: https://lists.gnu.org/archive/html/guix-devel/2020-12/msg00177.html * guix/narinfo.scm (decompresses-faster?): New procedure. (narinfo-best-uri): Add #:fast-decompression?. * guix/scripts/substitute.scm (%prefer-fast-decompression?): New variable. (call-with-cpu-usage-monitoring): New procedure. (with-cpu-usage-monitoring): New macro. (display-narinfo-data, process-substitution): Pass #:fast-decompression? to 'narinfo-best-uri'. (process-substitution): Wrap 'restore-file' call in 'with-cpu-usage-monitoring'. Set '%prefer-fast-decompression?'.
2021-03-19guix package: Autoload Guile-JSON and (guix describe).Ludovic Courtès
* guix/scripts/build.scm: Autoload (guix import json). * guix/scripts/package.scm: Autoload (guix import json) and (guix describe).
2021-03-19guix describe: Autoload Guile-JSON.Ludovic Courtès
* guix/scripts/describe.scm: Autoload (json).
2021-03-17weather: Only show request statistics when requests were made.Christopher Baines
This avoids the script crashing if all data is fetched from the cache. * guix/scripts/weather.scm (report-server-coverage): Only show request statistics when some requests have been made.
2021-03-17scripts: weather: Provide more representative request statistics.Christopher Baines
Previously, the "seconds per request" and "requests per second" statistics really reported (cache lookups + requests) per second. By looking at the actual number of requests made within lookup-narinfos, a more representative value can be reported. * guix/scripts/weather.scm (let/time): Allow for multiple return values. (report-server-coverage): Alter the reporting of request statistics.
2021-03-17scripts: substitute: Tweak error reporting in process-substitution.Christopher Baines
The call-with-connection-error-handling was added in 20c08a8a45d0f137ead7c05e720456b2aea44402, but that error handling was previously inside of open-connection-for-uri/maybe, which is related to (call-)with-cached-connection which was used in process-substitution, but only actually used with call-with-cached-connection when used in fetch-narinfos. There's some handling for similar errors within with-networking, which is used within process-substitution. * guix/scripts/substitute.scm (process-substitution): Remove call-with-connection-error-handling call.
2021-03-17scripts: substitute: Add back some error handling.Christopher Baines
In f50f5751fff4cfc6d5abba9681054569694b7a5c, the way fetch was called within process-substitution was changed. As call-with-cached-connection actually includes important error handling for the opening of a HTTP request, this change removed some error handling. This commit adds that back. Fixes <https://bugs.gnu.org/47157>. * guix/scripts/substitute.scm (call-with-cached-connection): New procedure. (with-cached-connection): New syntax rule. (process-substitution): Retry once for some errors when making HTTP requests to fetch substitutes.
2021-03-11time-machine: Fail when unrecognized option.zimoun
* guix/scripts/time-machine (parse-args): Fail when unrecognized option. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-10import: Add Go importer.Katherine Cox-Buday
This patch adds a 'guix import go' command. * doc/guix.texi (Requirements): Mention Guile-Lib dependency. (Invoking guix import): Document 'guix import go'. * gnu/packages/package-management.scm (guix)[inputs, propagated-inputs]: Add GUILE-LIB. * guix/self.scm (compiled-guix)[guile-lib]: New variable. [dependencies]: Add it. (specification->package): Add "guile-lib". * guix/build-system/go.scm (go-version->git-ref): New procedure. * guix/import/go.scm, guix/scripts/import/go.scm, tests/go.scm: New files. * guix/scripts/import.scm: Declare subcommand guix import go * po/guix/POTFILES.in: Add 'guix/scripts/import/go.scm'. * Makefile.am (MODULES): Add 'guix/import/go.scm' and 'guix/scripts/import/go.scm'. (SCM_TESTS): Add 'tests/go.scm'. Co-Authored-By: Helio Machado <0x2b3bfa0@gmail.com> Co-Authored-By: Francois Joulaud <francois.joulaud@radiofrance.com> Co-Authored-By: Maxim Cournoyer <maxim.cournoyer@gmail.com> Co-Authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-10Revert "inferior: Break cached-channel-instance into two procedures."Mathieu Othacehe
This reverts commit 7d63b775513e7049047222dbe403a4181f63828d because it raises some concerns, see: https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00124.html.
2021-03-10inferior: Break cached-channel-instance into two procedures.Mathieu Othacehe
Break cached-channel-instance into two different procedures: channels->cached-profile and instances->cached-profile operating respectively on channels and channels instances. * guix/inferior.scm (cached-channel-instance): Rename it into ... (cached-profile): ... this new procedure. (channels->cached-profile, instances->cached-profile): New procedures. * guix/scripts/time-machine.scm (guix-time-machine): Adapt accordingly.
2021-03-09weather: Call lookup-narinfos with a custom progress reporter.Christopher Baines
This means there's a useful progress bar when running guix weather. * guix/scripts/weather.scm (report-server-coverage): Pass #:make-progress-reporter to lookup-narinfos.
2021-03-09guix: substitutes: Make progress reporting configurable.Christopher Baines
Rather than always outputting to (current-error-port) in lookup-narinfos (which is called from within lookup-narinfos/diverse), take a procedure which should return a progress reporter, and defer any output to that. As this is now general purpose code, make the default behaviour to output nothing. Maintain the current behaviour of the substitute script by moving the progress reporter implementation there, and passing it in when calling lookup-narinfos/diverse. These changes should be generally useful, but I'm particularly looking at getting guix weather to do progress reporting differently, with this new flexibility. * guix/substitutes.scm (fetch-narinfos): Take a procedure to make a progress-reporter, and use that rather than the hardcoded behaviour. (lookup-narinfos): Add #:make-progress-reporter keyword argument, and pass this through to fetch-narinfos. (lookup-narinfos/diverse): Add a #:make-progress-reporter keyword argument, and pass this through to lookup-narinfos. * guix/scripts/substitute.scm (process-query): Pass a progress-reporter to lookup-narinfos/diverse.
2021-03-09scripts: system: Activate system when switching generations.Brice Waegeneire
Fixes <https://bugs.gnu.org/38884>. * guix/scripts/system.scm (switch-to-system-generation): Load the activate script for that generation. squash! scripts: system: Activate system when switching generations.
2021-03-06Merge branch 'master' into core-updatesChristopher Baines
2021-03-05guix: Split (guix substitutes) from (guix scripts substitute).Christopher Baines
This means there's a module for working with substitutes, rather than all the code sitting in the script. The need for this can be seen with the weather and challenge scripts, that now don't have to use code from the substitute script, but can instead use the substitute module. The separation here between the actual functionality of the substitute script and the underlying functionality used both there and elsewhere should make maintenance easier moving forward. This commit just moves code, none of the code should have been changed significantly. * guix/scripts/substitute.scm (%narinfo-cache-directory, %narinfo-ttl, %narinfo-negative-ttl, %narinfo-transient-error-ttl, %unreachable-hosts): Move variables to guix/substitutes.scm. (narinfo-cache-file, cached-narinfo, cache-narinfo!, narinfo-request, read-to-eof, call-with-connection-error-handling, fetch-narinfos, lookup-narinfos, lookup-narinfos/diverse): Move procedures to guix/substitutes.scm. * guix/substitutes.scm: New file. * Makefile.am: Add it. * guix/narinfo.scm: Remove redundant module. * guix/scripts/challenge.scm: Change (guix scripts substitute) to (guix substitutes). * guix/scripts/weather.scm: Change (guix scripts substitute) to (guix substitutes).
2021-03-05pull: Expand help text for --{url,commit,branch}.Tobias Geerinckx-Rice
* guix/scripts/pull.scm (show-help): Document that ‘--url’, ‘--commit’, and ‘--branch’ affect only the ‘guix’ channel (for now?).
2021-03-05profiles: 'package->manifest-entry' preserves transformations by default.Ludovic Courtès
Previously, transformations applied from a manifest (rather than via "guix install") would be lost. This change fixes that and simplifies things. Reported by zimoun at <https://lists.gnu.org/archive/html/guix-devel/2021-02/msg00153.html>. * guix/profiles.scm (default-properties): New procedure. (package->manifest-entry): Use it for #:properties. * guix/scripts/pack.scm (guix-pack)[with-transformations]: Remove. Remove caller. * guix/scripts/package.scm (transaction-upgrade-entry): Remove calls to 'manifest-entry-with-transformations'. * tests/guix-package.sh: Add test. * tests/transformations.scm ("options->transformation + package->manifest-entry"): New test.
2021-03-01environment: Allow compilation with Guile 2.2.Ludovic Courtès
Fixes <https://bugs.gnu.org/46826>. Reported by cage <cage-dev@twistfold.it>. * guix/scripts/environment.scm (guix-environment): Move 'manifest' definition before expression.
2021-02-24substitute: Ensure backtraces go to file descriptor 4.Ludovic Courtès
Fixes <https://bugs.gnu.org/46362>. Reported by Zhu Zihao <all_but_last@163.com>. Previously, backtraces due to uncaught exceptions would always to go file descriptor 2; the daemon would read it and error out with something like: error: got unexpected path `Backtrace:' from substituter This patch fixes that by ensuring backtraces are properly displayed on file descriptor 4. * guix/scripts/substitute.scm (with-redirected-error-port): New macro. (guix-substitute): Use 'with-redirected-error-port' instead of 'parameterize'.
2021-02-24substitute: Do not unwind stack traces upon uncaught exceptions.Ludovic Courtès
This is similar to commit a168c3e4f8d580f70e1c26bcdfc5b8378b2fa42d. * guix/scripts/substitute.scm (with-networking): Use 'with-throw-handler' instead of 'catch'.
2021-02-22substitute: Rework connection error handling.Christopher Baines
This is part of trying to reduce the interdependency of code within the substitute module. This commit addresses some of the error handling that was performed through open-connection-for-uri/maybe. The new approach is to use call-with-connection-error-handling, and wrap calls to http-multiple-get and http-fetch with that procedure, which takes care of handling connection errors. I think this is even slightly more rigerous than the previous setup, because this approach handles connection errors that occur when http-multiple-get reconnects to a host. * guix/scripts/substitute.scm (open-connection-for-uri/maybe): Transform in to call-with-connection-error-handling. (fetch-narinfos): Use call-with-connection-error-handling. (process-query): Replace open-connection-for-uri/maybe with open-connection-for-uri/cached. (open-connection-for-uri/cached): Set a default timeout, matching the behaviour in open-connection-for-uri/maybe. (process-substitution): Use call-with-connection-error-handling.
2021-02-22substitute: Remove fetch-narinfos use open-connection-for-uri/maybe.Christopher Baines
At least by default. Instead, make the open-connection procedure a parameter, and make the default guix:open-connection-for-uri. Do so similarly for lookup-narinfos and lookup-narinfos/diverse which work towards calling fetch-narinfos. This means this code can be moved to a different module, without having use/move the connection caching code. * guix/scripts/substitute.scm (fetch-narinfos): Add #:open-connection argument, and call http-multiple-get with it. (lookup-narinfos) Add #:open-connection argument, and call fetch-narinfos with it. (lookup-narinfos/diverse): Add #:open-connection argument, and call lookup-narinfos with it. (process-query): Call lookup-narinfos/diverse with #:open-connection open-connection-for-uri/maybe.
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