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2020-06-16time-machine: Add '--disable-authentication'....* guix/inferior.scm (cached-channel-instance): Add #:authenticate? and pass it to 'latest-channel-instances'. * guix/scripts/time-machine.scm (show-help, %options): Add '--disable-authentication'. (%default-options): Add 'authenticate-channels?'. (guix-time-machine): Honor it. Ludovic Courtès
2020-06-16pull: Add '--disable-authentication'....* guix/channels.scm (latest-channel-instance): Add #:authenticate? and honor it. (latest-channel-instances): Likewise. * guix/scripts/pull.scm (%default-options): Add 'authenticate-channels?'. (show-help, %options): Add '--disable-authentication'. (guix-pull): Pass #:authenticate? to 'latest-channel-instances'. * doc/guix.texi (Invoking guix pull): Document it. Ludovic Courtès
2020-06-16channels: Automatically add introduction for the official 'guix' channel....This is useful when people run "guix time-machine -C channels.scm", where 'channels.scm' misses channel introductions. * guix/channels.scm (%default-channel-url): New variable. (%default-channels): Use it. (ensure-default-introduction): New procedure. (latest-channel-instance): Call it. Ludovic Courtès
2020-06-16channels: Make 'validate-pull' call right after clone/pull....This should come before patching, authentication, etc. * guix/channels.scm (latest-channel-instance): Add #:validate-pull parameter and honor it. Return a single value: the instance. (ensure-forward-channel-update): Change 'instance' parameter to 'commit' and adjust accordingly. (latest-channel-instances): Adjust to 'latest-channel-instance' changes. * guix/scripts/pull.scm (warn-about-backward-updates): Change 'instance' parameter to 'commit' and adjust accordingly. * tests/channels.scm ("latest-channel-instances #:validate-pull"): Likewise. Ludovic Courtès
2020-06-16channels: 'latest-channel-instance' authenticates Git checkouts....Fixes <https://bugs.gnu.org/22883>. * guix/channels.scm (<channel>)[introduction]: New field. (<channel-introduction>): New record type. (%guix-channel-introduction): New variable. (%default-channels): Use it. (<channel-metadata>)[keyring-reference]: New field. (%default-keyring-reference): New variable. (read-channel-metadata, read-channel-metadata-from-source): Initialize the 'keyring-reference' field. (commit-short-id, verify-introductory-commit) (authenticate-channel): New procedures. (latest-channel-instance): Call 'authenticate-channel' when CHANNEL has an introduction. * tests/channels.scm (gpg+git-available?, commit-id-string): New procedures. ("authenticate-channel, wrong first commit signer"): ("authenticate-channel, .guix-authorizations"): New tests. * doc/guix.texi (Invoking guix pull): Mention authentication. Ludovic Courtès
2020-06-16tests: Move OpenPGP helpers to (guix tests gnupg)....* tests/git-authenticate.scm (key-id): Remove. (%ed25519-public-key-file, %ed25519-secret-key-file) (%ed25519bis-public-key-file, %ed25519bis-secret-key-file) (read-openpgp-packet, key-fingerprint): Move to... * guix/tests/gnupg.scm: ... here. Ludovic Courtès
2020-06-16git-authenticate: 'authenticate-commits' takes a #:keyring parameter....* guix/git-authenticate.scm (authenticate-commits): Add #:keyring parameter. Ludovic Courtès
2020-06-16git-authenticate: Cache takes a key parameter....* guix/git-authenticate.scm (authenticated-commit-cache-file) (cache-authenticated-commit, previously-authenticated-commits): Add 'key' parameter and honor it. * build-aux/git-authenticate.scm (git-authenticate): Pass "channels/guix" as the key. Ludovic Courtès
2020-06-16build-system: cmake: Add substitutable keyword....* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add substitutable keyword. Efraim Flashner
2020-06-16pack: Add zstd compressor....* guix/scripts/pack.scm (%compressors): Add zstd. * doc/guix.texi (Invoking guix pack): Document it. Tobias Geerinckx-Rice
2020-06-15ui: Use package-description-string....* guix/ui.scm (package->recutils): Use package-description-string instead of package-description and P_. Arun Isaac
2020-06-15ui: Do not translate package synopsis a second time....* guix/ui.scm (package->recutils): package-synopsis-string already returns a translated string. Do not attempt to translate it again. Arun Isaac
2020-06-15ui: Cut off search early if any regexp does not match....* guix/ui.scm (relevance): When one of the regexps does not match, cut off early and return 0. Do not try to match the remaining regexps. Arun Isaac
2020-06-15ci: Add build-products id field and export accessors....* guix/ci.scm (build-product?, build-product-id, build-product-type, build-product-file-size, build-product-path): Export them, [id]: new field. Mathieu Othacehe
2020-06-15ci: Add status option to "latest-builds"....* guix/ci.scm (latest-builds): Add "status" option. Mathieu Othacehe
2020-06-15download: Remove usa-mirror.go-parts.com mirror....It incorrectly redirects 404s (at least) to the commercial home page. * guix/download.scm (%mirrors): Remove usa-mirror.go-parts.com URLs. Tobias Geerinckx-Rice
2020-06-15ci: Fix buildproducts reading....This is a follow-up of 4e05bbb093a17145fcabd48ea1d2c9cd7559084d. * guix/ci.scm (<build>)[products]: Test for vector type, as products can be "null". Mathieu Othacehe
2020-06-15ci: Add job option to "latest-builds"....* guix/ci.scm (latest-builds): Add "job" option. Mathieu Othacehe
2020-06-15ci: Add build products support....* guix/ci.scm (<build-product>): New json mapping, (<build)[products]: new field. Mathieu Othacehe
2020-06-14guix repl: Add script execution....* guix/scripts/repl.scm: Add filename options for script execution. * doc/guix.texi (Invoking guix repl): Document it. * tests/guix-repl.sh: Test it. * Makefile.am: (SH_TESTS): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2020-06-14scripts: system: Fix "init" command....This is a follow-up of 7ca533c7237622d70b423033c4506217d9ce4014. The introduced "target" variable is shadowing the target argument. * guix/scripts/system.scm (perform-action): Rename "target" variable to "target*". Mathieu Othacehe
2020-06-14lint: Add 'check-for-collisions' checker....Suggested by Edouard Klein <edk@beaver-labs.com>. * guix/profiles.scm (check-for-collisions): Export. * guix/lint.scm (check-profile-collisions): New procedure. (%local-checkers): Add 'profile-collisions' checker. * tests/lint.scm ("profile-collisions: no warnings") ("profile-collisions: propagated inputs collide") ("profile-collisions: propagated inputs collide, store items"): New tests. * doc/guix.texi (Invoking guix lint): Document it. Ludovic Courtès
2020-06-14profiles: Fix pathological performance of 'manifest-transitive-entries'....For packages with lots of propagated inputs, 'manifest-transitive-entries', as called from 'check-for-collisions', would exhibit pathological behavior. For example, "guix install cl-ana" wouldn't complete in 1mn; now, it's down to 20s. The issue was that manifest entries would never be 'equal?' due to the delayed field in <manifest-entry>. * guix/profiles.scm (manifest-transitive-entries): Use a vhash instead of a set. Use 'manifest-entry=?' instead of 'equal?' when checking for equality. Ludovic Courtès
2020-06-14ui: Set 'LESS' environment variable unconditionally....Fixes <https://bugs.gnu.org/41811>. Reported by Lars-Dominik Braun <lars@6xq.net>. * guix/ui.scm (call-with-paginated-output-port): Remove (getenv "LESS") call. Ludovic Courtès
2020-06-13Merge branch 'staging'Marius Bakke
2020-06-13image: Make 'find-image' non-monadic....* gnu/system/image.scm (find-image): Make non-monadic. Add 'target' parameter. * gnu/tests/install.scm (run-install): Update caller, passing (%current-target-system). * guix/scripts/system.scm (perform-action): Likewise. Jan (janneke) Nieuwenhuizen
2020-06-13guix: Update to Bioconductor 3.11....* guix/build-system/r.scm (bioconductor-uri): Use new URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.11. Ricardo Wurmus
2020-06-12lint: check-patch-file-names: Use origin-actual-file-name....This avoids crashes for the patch-file-names checker where a <origin> is used for a patch, but without a value for the file-name field. This is currently the case with the bash package. * guix/lint.scm (check-patch-file-names): Change origin-file-name to origin-actual-file-name. Christopher Baines
2020-06-12git-authenticate: Disallow SHA1 (and MD5) signatures....* guix/git-authenticate.scm (commit-signing-key): Add #:disallowed-hash-algorithms and honor it. (authenticate-commit)[recent-commit?]: New variable. Pass #:disallowed-hash-algorithms to 'commit-signing-key'. * tests/git-authenticate.scm ("signed commits, SHA1 signature"): New test. Ludovic Courtès
2020-06-12download: Add more apache mirrors....* guix/download.scm (%mirrors): Add more apache mirrors. Efraim Flashner
2020-06-11guix: lint: Support origins in check-patch-file-names....* guix/lint.scm (check-patch-file-names)[starts-with-package-name?]: New procedure, extracted from the existing logic. Using it, add a clause to the match-lambda to handle origin records. Chris Marusich
2020-06-11Merge branch 'master' into stagingMarius Bakke
2020-06-11packages: 'package-grafts' returns grafts for all the relevant outputs....Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test. Ludovic Courtès
2020-06-10database: separate transaction-handling and retry-handling....Previously call-with-transaction would both retry when SQLITE_BUSY errors were thrown and do what its name suggested (start and rollback/commit a transaction). This changes it to do only what its name implies, which simplifies its implementation. Retrying is provided by the new call-with-SQLITE_BUSY-retrying procedure. * guix/store/database.scm (call-with-transaction): no longer restarts, new #:restartable? argument controls whether "begin" or "begin immediate" is used. (call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction, call-with-retrying-savepoint): new procedures. (register-items): use call-with-retrying-transaction to preserve old behavior. * .dir-locals.el (call-with-retrying-transaction, call-with-retrying-savepoint): add indentation information. Caleb Ristvedt
2020-06-10database: ensure update-or-insert is run within a transaction...update-or-insert can break if an insert occurs between when it decides whether to update or insert and when it actually performs that operation. Putting the check and the update/insert operation in the same transaction ensures that the update/insert will only succeed if no other write has occurred in the middle. * guix/store/database.scm (call-with-savepoint): new procedure. (update-or-insert): use call-with-savepoint to ensure the read and the insert/update occur within the same transaction. Caleb Ristvedt
2020-06-10database: rewrite query procedures in terms of with-statement....Most of our queries would fail to finalize their statements properly if sqlite returned an error during their execution. This resolves that, and also makes them somewhat more concise as a side-effect. This also makes some small changes to improve certain queries where behavior was strange or overly verbose. * guix/store/database.scm (call-with-statement): new procedure. (with-statement): new macro. (last-insert-row-id, path-id, update-or-insert, add-references): rewrite to use with-statement. (update-or-insert): factor last-insert-row-id out of the end of both branches. (add-references): remove pointless last-insert-row-id call. * .dir-locals.el (with-statement): add indenting information. Caleb Ristvedt
2020-06-10database: work around guile-sqlite3 bug preventing statement reset...guile-sqlite3 provides statement caching, making it unnecessary for sqlite to keep re-preparing statements that are frequently used. Unfortunately it doesn't quite emulate the semantics of sqlite_finalize properly, because it doesn't cause a commit if the statement being finalized is the last "active" statement (see https://notabug.org/guile-sqlite3/guile-sqlite3/issues/12). We work around this by wrapping sqlite-finalize with our own version that ensures sqlite-reset is called, which does The Right Thing™. * guix/store/database.scm (sqlite-finalize): new procedure that shadows the sqlite-finalize from (sqlite3). Caleb Ristvedt
2020-06-09import: stackage: Fix typo....* guix/import/stackage.scm (latest-lts-release): Fix spelling of ‘if’. Tobias Geerinckx-Rice
2020-06-09import: stackage: Fix typo....* guix/import/stackage.scm (latest-lts-release): Fix spelling of "included". Marius Bakke
2020-06-09store: Use buffered I/O for all protocol writes...* guix/store.scm (run-gc) Use buffered output port. (export-path) Same. (add-file-tree-to-store) Same. (set-build-options): Same. Add explicit flush. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-06-09git-authenticate: 'commit-authorized-keys' properly handles orphan commits....Previously it would trigger a wrong-number-of-arguments error for 'lset-intersection'. * guix/git-authenticate.scm (commit-authorized-keys): Add case for when 'commit-parents' returns the empty list. Ludovic Courtès
2020-06-09git: 'commit-difference' really excludes the ancestors of #:excluded....* guix/git.scm (commit-difference): Initialize VISITED to the closure of OLD and EXCLUDED, as written in the docstring. * tests/git.scm ("commit-difference, excluded commits"): Adjust accordingly. Ludovic Courtès
2020-06-08Merge branch 'master' into stagingMarius Bakke
2020-06-08syscalls: set-thread-name, thread-name: Fix thinko....* guix/build/syscalls.scm (set-thread-name, thread-name): Oops, fix thinko. Jan (janneke) Nieuwenhuizen
2020-06-08syscalls: set-thread-name, thread-name: Stub for the Hurd....Avoid crash Backtrace: guix/build/syscalls.scm:405:8: In procedure prctl: Function not implemented because of missing prctl on the Hurd. * guix/build/syscalls.scm (set-thread-name, thread-name): Rename to ... (set-thread-name!/linux,thread-name/linux): ...this. (set-thread-name, thread-name): Swtich between linux implementation and or stub. Jan (janneke) Nieuwenhuizen
2020-06-07git-authenticate: Prevent removal of '.guix-authorizations'....* guix/git-authenticate.scm (commit-authorized-keys) [parents-have-authorizations-file?, assert-parents-lack-authorizations]: New procedures. Use the latter before returning DEFAULT-AUTHORIZATIONS. * guix/git.scm (false-if-git-not-found): Export. * guix/tests/git.scm (populate-git-repository): Add 'remove' clause. * tests/git-authenticate.scm ("signed commits, .guix-authorizations removed"): New test. Ludovic Courtès
2020-06-07git: 'update-cached-checkout' gracefully handles missing starting commit....Fixes <https://bugs.gnu.org/41604> Reported by John Soo <jsoo1@asu.edu> and zimoun <zimon.toutoune@gmail.com>. * guix/git.scm (false-if-git-not-found): New macro. (reference-available?): Use it. (update-cached-checkout): Use it when looking up STARTING-COMMIT. Set RELATION to 'unrelated when OLD is #false. Ludovic Courtès
2020-06-06ui: 'display-search-results' automatically invokes the pager....* guix/ui.scm (call-with-paginated-output-port): New procedure. (with-paginated-output-port): New macro. (display-search-results): Use it instead of displaying a hint. Ludovic Courtès
2020-06-06utils: Add 'with-environment-variables'....* guix/tests/gnupg.scm (call-with-environment-variables) (with-environment-variables): Move to... * guix/utils.scm: ... here. * guix/tests/git.scm: Adjust accordingly. Ludovic Courtès
2020-06-06packages: Make 'bag-grafts' insensitive to '%current-target-system'....Fixes <https://bugs.gnu.org/41713>. Reported by Mathieu Othacehe. * guix/packages.scm (bag-grafts): Wrap 'fold-bag-dependencies' calls in 'parameterize'. * tests/packages.scm ("package->bag, sensitivity to %current-target-system"): New test. Ludovic Courtès