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2020-11-17Merge remote-tracking branch 'origin/version-1.2.0' into masterMaxim Cournoyer
Conflicts: gnu/packages/bioinformatics.scm The python-pysam package fixed in master was kept instead of the update done in the version-1.2.0 branch.
2020-11-17guix: system: Make disk-image root file system non-volatile by default.Maxim Cournoyer
And add a new '--volatile' option to have it volatile otherwise. * guix/scripts/system.scm (%options)[volatile-root?]: New boolean option. (%default-options): Set its default value to #f. (show-help): Add help doc. * guix/scripts/system.scm (perform-action): Propagate option... (system-derivation-for-action): ...here. Use it to set the volatile-root? field of the image object passed to SYSTEM-IMAGE. * doc/guix.texi (Invoking guix system): Document it.
2020-11-16pull: Do not suggest running `guix pull --news' on the first run.Florian Pelz
* guix/scripts/pull.scm (display-channel-news-headlines): If there are no news to display, return false instead of <unspecified>.
2020-11-16self: Limit the number of threads used when translating manuals.Ludovic Courtès
* guix/self.scm (translate-texi-manuals)[build](parallel-jobs): New variable. Use it as first argument to 'n-par-for-each'.
2020-11-16utils: Add 'cxx-for-target'.Danny Milosavljevic
* guix/utils.scm (cxx-for-target): New procedure.
2020-11-16publish: Harmonize buffer size values and configuration.Maxim Cournoyer
This change harmonizes the way we configure the buffer sizes and the socket options, so that we don't forget to change it at one place like it happened in commit 5e3d169945935b53325e6b738a307ba286751259. * guix/scripts/publish.scm (%default-buffer-size) (%default-socket-options): New variables. * guix/scripts/publish.scm (configure-socket): New procedure. (compress-nar): Use %default-buffer-size for the buffer size, increased from 128 to 208 KiB. (nar-response-port): Likewise, increased from 64 to 208 KiB. (http-write): Use configure-socket to set socket options. (open-server-socket): Likewise.
2020-11-15archive: Warn about replacing an ACL symlink.Tobias Geerinckx-Rice
* guix/scripts/archive.scm (authorize-key): Warn when %ACL-FILE is a symbolic link and print an additional hint for Guix System users. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-11-14guix: hg-download: Add hg-predicate.Holger Peters
`hg-predicate' acts for mercurial repositories as `git-predicate' acts for git-repositories. * guix/hg-download.scm (hg-predicate): New procedure. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-13guix build: Expose log-url for third parties.John Soo
* guix/scripts/build.scm (log-url): Expose it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-13pack: Expose some bindings for third-party use.John Soo
* guix/scripts/pack.scm (compressor-name, compressor-extension, compressor-command, %compressors, %formats): Export. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-12Merge branch 'version-1.2.0'Ludovic Courtès
2020-11-12lint: patch-file-names: Simplify 'search-patch' error handling.Ludovic Courtès
* guix/lint.scm (check-patch-file-names): Remove 'message-condition?' guard, which is useless since d51bfe242fbe6f3f8f71d723e8fe0c7bbe711ba1. Remove call to 'format' in the 'formatted-message?' case.
2020-11-10publish: Increase TCP buffer size when sending non-cached nars.Ludovic Courtès
This increases throughput tenfold (!) on localhost when downloading large nars without '--cache'. This is a followup to 5e3d169945935b53325e6b738a307ba286751259. Reported by Maxim Cournoyer. * guix/scripts/publish.scm (http-write): In the 'application/x-nix-archive' case, add call to 'setsockopt'.
2020-11-10guix: ocaml: Add package-with-ocaml4.09.Julien Lepiller
* guix/build-system/ocaml.scm (package-with-ocaml4.09) (strip-ocaml4.09-variant): New variables. * gnu/packages/ocaml.scm (ocaml4.09-result, ocaml4.09-csexp) (ocaml4.09-dune-configurator, ocaml4.09-dune): New variables.
2020-11-10ui: Use the right accessor when reporting '&gexp-input-error'.Ludovic Courtès
* guix/ui.scm (call-with-error-handling): In the 'gexp-input-error?' case, use 'gexp-error-invalid-input' as the accessor.
2020-11-09publish: Create files in the cache as #o644.Ludovic Courtès
Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/scripts/publish.scm (compress-nar): Add 'chmod' call to ensure PORT is #o644, in the uncompressed case. (bake-narinfo+nar): Likewise for the narinfo file. * tests/publish.scm ("with cache"): Check permissions on CACHED and NAR.
2020-11-08publish: Create files in the cache as #o644.Ludovic Courtès
Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/scripts/publish.scm (compress-nar): Add 'chmod' call to ensure PORT is #o644, in the uncompressed case. (bake-narinfo+nar): Likewise for the narinfo file. * tests/publish.scm ("with cache"): Check permissions on CACHED and NAR.
2020-11-06ui: Add missing format argument in 'warn-about-load-error'.Ludovic Courtès
* guix/ui.scm (warn-about-load-error): Add missing argument to 'warning'.
2020-11-05pack: Do not include the host (guix config).Ludovic Courtès
* guix/scripts/pack.scm (store-database)[build]: Import a synthetic (guix config).
2020-11-05gexp: Warn when importing (guix config) or (ice-9 …).Ludovic Courtès
While importing those modules from the host system is valid, it is often a mistake that introduces non-reproducibility. This patch prints a warning when that happens. * guix/gexp.scm (gexp-attribute): Add #:validate parameter and honor it. (gexp-modules)[validate-modules]: New procedure. Pass it to 'gexp-attribute'. * tests/gexp.scm ("gexp-modules, warning"): New test.
2020-11-05gexp: Store the source code location in <gexp>.Ludovic Courtès
* guix/gexp.scm (<gexp>)[location]: New field. (gexp-location): New procedure. (write-gexp): Print the location of GEXP. (gexp->derivation): Adjust call to 'make-gexp'. (gexp): Likewise.
2020-11-04publish: Do not path the empty string to 'query-path-info'.Ludovic Courtès
Fixes <https://bugs.gnu.org/44442>. Regression introduced in 2b2ab7796ac186d88060793b8873fc0e21462758. * guix/scripts/publish.scm (render-nar/cached): Do not call 'bypass-cache?' when ITEM is the empty string. * tests/publish.scm ("with cache, cache bypass, unmapped hash part"): New test.
2020-11-03guix import stackage: Default to LTS version that matches GHC.Robert Vollmert
In particular, this means that 'guix lint' won't warn to update to versions that won't necessarily fit our package set well. * guix/import/stackage.scm (%stackage-url): Change to "https", avoiding redirect log messages. (%default-lts-version): New variable. (stackage-lts-info-fetch, stackage->guix-package, latest-lts-release): Use it. (lts-info-ghc-version): Remove unused procedure. Signed-off-by: Timothy Sample <samplet@ngyro.com>
2020-11-03system: reconfigure: Use the disk-installer if provided.Mathieu Othacehe
Fixes: <https://issues.guix.gnu.org/44101>. * gnu/build/bootloader.scm (write-file-on-device): Pass 'no-fail flag instead of 'no-create. Use a latin-1 transcoder. * guix/scripts/system/reconfigure.scm (install-bootloader-program): Add a "disk-installer" argument and use it as a fallback. (install-bootloader): Adapt accordingly. * gnu/tests/reconfigure.scm (run-install-bootloader-test): Ditto.
2020-11-02profiles: Add fast path for 'xdg-mime-database' hook.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/44053>. Reported by Joshua Branson <jbranso@dismail.de> and Maxim Cournoyer <maxim.cournoyer@gmail.com>. * guix/profiles.scm (xdg-mime-database): When PKGDIRS contains only one element, symlink directly to it. Invoke 'update-mime-database' only when PKGDIRS contains two or more elements, which is less frequent.
2020-11-01system: Add store-directory-prefix to boot-parameters.Miguel Ángel Arruga Vivas
Fixes <http://issues.guix.gnu.org/44196> * gnu/machine/ssh.scm (roll-back-managed-host): Use boot-parameters-store-directory-prefix. * gnu/system.scm (define-module): Export boot-parameters-store-directory-prefix. (<boot-parameters>)[store-directory-prefix]: New field. It is used to generate the correct paths when /gnu/store is installed on a btrfs subvolume whose name doesn't match the final runtime path, as the bootloader doesn't have knowledge about the final mounting points. [boot-parameters-store-directory-prefix]: New accessor. (read-boot-parameters): Read directory-prefix from store field. (operating-system-boot-parameters-file): Add directory-prefix to store field. * guix/scripts/system.scm (reinstall-bootloader): Use boot-parameters-store-directory-prefix. * test/boot-parameters.scm (%default-btrfs-subvolume, %default-store-directory-prefix): New variables. (%grub-boot-parameters): Use %default-store-directory-prefix. (%default-operating-system): Use %default-btrfs-subvolume. (test-boot-parameters): Add directory-prefix. (test optional fields): Add test for directory-prefix. (test os store-directory-prefix): New test.
2020-10-31transformations: Raise '&formatted-message' exceptions instead of 'leave'.Ludovic Courtès
* guix/transformations.scm (evaluate-replacement-specs) (package-git-url, evaluate-git-replacement-specs) (transform-package-source-git-url) (transform-package-toolchain): Use 'raise' and 'formatted-message' instead of 'leave'.
2020-10-31guix build: Move transformation options to (guix transformations).Ludovic Courtès
* guix/transformations.scm: New file. * tests/scripts-build.scm: Rename to... * tests/transformations.scm: ... this. * Makefile.am (MODULES): Add 'guix/transformations.scm'. (SCM_TESTS): Adjust to rename. * guix/scripts/build.scm (numeric-extension?) (tarball-base-name, <downloaded-file>, download-to-store*) (compile-downloaded-file, package-with-source) (transform-package-source, evaluate-replacement-specs) (transform-package-inputs, transform-package-inputs/graft) (%not-equal, package-git-url, evaluate-git-replacement-specs) (transform-package-source-branch, transform-package-source-commit) (transform-package-source-git-url, package-dependents/spec) (package-toolchain-rewriting, transform-package-toolchain) (transform-package-with-debug-info, transform-package-tests) (%transformations, transformation-procedure, %transformation-options) (show-transformation-options-help, options->transformation) (package-transformations): Move to (guix transformations). * guix/scripts/environment.scm: Adjust accordingly. * guix/scripts/graph.scm: Likewise. * guix/scripts/install.scm: Likewise. * guix/scripts/pack.scm: Likewise. * guix/scripts/package.scm: Likewise. * guix/scripts/upgrade.scm: Likewise. * po/guix/POTFILES.in: Add 'guix/transformations.scm'.
2020-10-31guix build: 'options->transformation' no longer takes a 'store' parameter.Ludovic Courtès
* guix/scripts/build.scm (transform-package-source) (transform-package-inputs, transform-package-inputs/graft) (transform-package-source-branch, transform-package-source-commit) (transform-package-source-git-url, transform-package-toolchain) (transform-package-with-debug-info, transform-package-tests): Remove 'store' parameter. (options->transformation, options->derivations): Adjust accordingly. * guix/scripts/environment.scm (options/resolve-packages): Likewise. * guix/scripts/graph.scm (guix-graph): Likewise. * guix/scripts/pack.scm (guix-pack): Likewise. * guix/scripts/package.scm (transaction-upgrade-entry): Likewise. (process-actions): Likewise. * tests/scripts-build.scm ("options->transformation, no transformations") ("options->transformation, with-source, replacement"): Adjust tests. ("options->transformation, with-source") ("options->transformation, with-source, with version") ("options->transformation, with-source, PKG=URI"): Use 'lower-object' to compute the store file name of the source. ("options->transformation, with-source, no matches"): Remove 'with-store' and adjust accordingly. ("options->transformation, with-input"): Likewise. ("options->transformation, with-graft"): Likewise. ("options->transformation, with-branch"): Likewise. ("options->transformation, with-commit"): Likewise. ("options->transformation, with-git-url"): Likewise. ("options->transformation, with-git-url + with-branch"): Likewise. ("options->transformation, with-c-toolchain"): Likewise. ("options->transformation, with-c-toolchain twice"): Likewise. ("options->transformation, with-c-toolchain, no effect"): Likewise. ("options->transformation, with-debug-info"): Likewise. ("options->transformation, without-tests"): Likewise.
2020-10-31guix build: Remove unnecessary (replacement #f).Ludovic Courtès
* guix/scripts/build.scm (package-with-source): Remove 'replacement' field, which is innate since d5ec5ed7197d121130af6953378bcfd8929a9754.
2020-10-31guix build: 'package-with-source' no longer takes a 'store' parameter.Ludovic Courtès
* guix/scripts/build.scm (<downloaded-file>): New record type. (download-to-store*): New variable. (compile-downloaded-file): New procedure. (package-with-source): Remove 'store' parameter. Use 'downloaded-file' instead of 'download-to-store'. (transform-package-source): Adjust accordingly.
2020-10-30guix: pack: Only wrap executable files.Eric Bavier
* guix/scripts/pack.scm (wrapped-package)<build>: Build wrappers for executable files and symlink others. * tests/guix-pack-relocatable.sh: Test relocatable example of mixed executable and non-executable files.
2020-10-30guix: pack: Fix offset calculation for store directory mount point.Eric Bavier
Fixes wrapping of non-package things, where the target store directory may differ in length from the original. * guix/scripts/pack.scm (wrapped-package)<build-wrapper>: Define WRAPPER_PROGRAM macro with wrapper's file name. * gnu/packages/aux-files/run-in-namespace.c (main): Offset index by len of that file name.
2020-10-30scripts: lint: Add '--exclude' option.zimoun
* guix/scripts/lint.scm (%options, parse-options): Add '--exclude' option. (option-checker): New helper function. * doc/guix.texi (Invoking guix lint): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-30scripts: lint: Fix '--no-network' option.zimoun
* guix/scripts/lint.scm: (show-help): Add '--no-network' option message. (%options, parse-options): Fix argument order. * doc/guix.texi (Invoking guix lint): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-28build/maven: Fix typo.Vagrant Cascadian
* guix/build/maven/pom: Fix spelling of "with".
2020-10-28build/maven: fix-pom-dependencies: Fix typo.Vagrant Cascadian
* guix/build/maven/pom (fix-pom-dependencies): Fix spelling of "overrides".
2020-10-28build/maven: fix-pom-dependencies: Fix typo.Vagrant Cascadian
* guix/build/maven/pom (fix-pom-dependencies): Fix spelling of "overridden".
2020-10-28substitute: Do not discard ttl info when the response code is 202.Miguel Ángel Arruga Vivas
* guix/scripts/substitute.scm (fetch-narinfos) [handle-narinfo-response]: Add code 202 to the condition. This will allow in the future the use of 404 for nar requests which cannot be built in the present, leaving for the 202 to indicate that a request has triggered a nar generation that might be completed later, as specified in <https://www.ietf.org/rfc/rfc2616.txt>.
2020-10-28publish: Add '--cache-bypass-threshold'.Ludovic Courtès
* guix/scripts/publish.scm (show-help, %options): Add '--cache-bypass-threshold'. (low-compression): New procedure. (cache-bypass-threshold): New parameter. (bypass-cache?): New procedure. (render-narinfo/cached): Call 'render-narinfo' when 'bypass-cache?' returns true. (render-nar/cached): Call 'render-nar' when 'bypass-cache?' returns true. (guix-publish): Parameterize 'cache-bypass-threshold'. * tests/publish.scm ("with cache", "with cache, lzip + gzip") ("with cache, uncompressed"): Pass '--cache-bypass-threshold=0'. ("with cache, vanishing item"): Expect 200 for RESPONSE. ("with cache, cache bypass"): New test.
2020-10-27publish: Provide server's signing key.Amar Singh
* guix/scripts/publish.scm (render-signing-key): New procedure. (render-home-page): Add link to it. (make-request-handler): Handle it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-26build/maven-build-system: Return #t in fix-pom-files phase.Björn Höfling
* guix/build/maven-build-system.scm (fix-pom-files): Return #t.
2020-10-25offload: Adjust default 'max-silent-time' value of 'open-ssh-session'.Ludovic Courtès
* guix/scripts/offload.scm (open-ssh-session): Have 'max-silent-time' default to #f rather than -1, which is not a valid timeout value. Adjust body accordingly.
2020-10-25offload: Export <build-machine> accessors.Ludovic Courtès
* guix/scripts/offload.scm: Export 'build-machine' accessors.
2020-10-22git: Support HTTP and HTTPS proxies.Ludovic Courtès
This allows 'guix pull' and similar to fetch code over a proxy. * guix/git.scm (make-default-fetch-options): Pass #:proxy-url.
2020-10-22git: Display a progress bar while fetching a repo.Ludovic Courtès
Fixes <https://bugs.gnu.org/39260>. This uses the API of the yet-to-be-released Guile-Git 0.4.0. Using an older version is still possible, but progress report is disabled. * guix/git.scm (show-progress, make-default-fetch-options): New procedures. (clone*, update-cached-checkout): Use it instead of 'make-fetch-options'.
2020-10-22git: Require Guile-Git 0.3.0 or later.Ludovic Courtès
* guix/git.scm (auth-supported?): Remove. (clone*): Inline code that was dependent on AUTH-SUPPORTED?. (update-cached-checkout): Likewise. (resolve-reference): Remove check for 'object-lookup-prefix' and use it unconditionally. (load-git-submodules): Remove. (update-submodules): Use 'repository-submodules', 'submodule-lookup', etc. unconditionally. (update-cached-checkout): Use 'repository-close!' unconditionally. * m4/guix.m4 (GUIX_CHECK_GUILE_GIT): New macro. * configure.ac: Use it and error out when it fails. * doc/guix.texi (Requirements): Bump to Guile-Git 0.3.0.
2020-10-22graph: Don't insist on "Helvetica" in the Graphviz backend.Ludovic Courtès
Suggested by Fulbert <fulbert@bluewin.ch>. * guix/graph.scm (emit-node): Use "sans" instead of "Helvetica".
2020-10-20guix build: Move package transformation options behind '--help-transform'.Ludovic Courtès
This change declutters the '--help' output. * guix/scripts/build.scm (show-build-options-help) (%standard-build-options): Add '--help-transform'. (show-transformation-options-help): Make private. (show-help): Remove call to 'show-transformation-options-help'. * guix/scripts/build.scm (show-help): Likewise. * guix/scripts/environment.scm (show-help): Likewise. * guix/scripts/graph.scm (show-help): Likewise. * guix/scripts/install.scm (show-help): Likewise. * guix/scripts/pack.scm (show-help): Likewise. * guix/scripts/package.scm (show-help): Likewise. * guix/scripts/upgrade.scm (show-help): Likewise. * doc/guix.texi (Package Transformation Options): Mention '--help-transform'.
2020-10-20guix build: Add '--with-debug-info'.Ludovic Courtès
* guix/scripts/build.scm (transform-package-with-debug-info): New procedure. (%transformations): Add 'with-debug-info'. (%transformation-options, show-transformation-options-help): Add '--with-debug-info'. * tests/scripts-build.scm ("options->transformation, with-debug-info"): New test. * doc/guix.texi (Package Transformation Options): Document '--with-debug-info'. (Installing Debugging Files): Introduce sections. Remove bit about eventual "opt-out" since this is not happening. Document '--with-debug-info' under "Rebuilding with Debugging Info".
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