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2015-12-25guix package: Fix typo in comment....* guix/scripts/package.scm: Fix typo. Leo Famulari
2015-12-21build: Add bioconductor-uri procedure....* guix/build-system/r.scm (bioconductor-uri): New procedure. Ricardo Wurmus
2015-12-21import: Drop empty list items....* guix/import/cran.scm (listify): Remove empty strings from result list. Ricardo Wurmus
2015-12-21http-client: Support basic authentication....* guix/http-client.scm (http-fetch): Add Authorization header to request when the URI contains userinfo. Ricardo Wurmus
2015-12-20lint: The CPE name of GRUB is "grub2"....Reported by Leo Famulari. * guix/scripts/lint.scm (package-name->cpe-name): Add "grub". Ludovic Courtès
2015-12-20profiles: Honor search paths of propagated inputs....Fixes <http://bugs.gnu.org/22073>. Reported by Federico Beffa <beffa@ieee.org>. * guix/profiles.scm (package->manifest-entry): Use 'package-transitive-native-search-paths' when computing 'search-paths' field. * tests/profiles.scm ("package->manifest-entry, search paths"): New test. Ludovic Courtès
2015-12-20packages: Add 'package-transitive-native-search-paths'....* guix/packages.scm (package-transitive-native-search-paths): New procedure. * tests/packages.scm ("package-transitive-native-search-paths"): New test. Ludovic Courtès
2015-12-14gexp: 'local-file' resolves relative file names....* guix/gexp.scm (<local-file>): Rename constructor to '%%local-file'. Add 'absolute' field. (%local-file, extract-directory, absolute-file-name): New procedures. (current-source-directory): New macro. (local-file): Adjust call to '%local-file'. (local-file-absolute-file-name): New procedure. (local-file-compiler): Force the 'absolute' field. * tests/guix-system.sh: Test whether 'local-file' canonicalization works. * doc/guix.texi (G-Expressions): Adjust. Ludovic Courtès
2015-12-14profiles: Silence Info installation....* guix/profiles.scm (info-dir-file)[build]: Pass --silent to 'install-info'. Ludovic Courtès
2015-12-13guix build: Gracefully handle type errors in -e and -f....* guix/scripts/build.scm (options->things-to-build)[validate-type]: New procedure. [ensure-list]: Use it. Ludovic Courtès
2015-12-13guix build: Remove dead code....* guix/scripts/build.scm (options->things-to-build): Remove unused 'match' clause. Ludovic Courtès
2015-12-11import: cran: Parse DESCRIPTION instead of HTML....* guix/import/cran.scm (description->alist, listify, beautify-description, description->package): New procedures. (table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove proceduces. (latest-release): Use parsed DESCRIPTION instead of SXML. * tests/cran.scm: Rewrite to match importer. Ricardo Wurmus
2015-12-11import: cran: Match more license strings....* guix/import/cran.scm (string->license): Match more license strings to license symbols. Ricardo Wurmus
2015-12-09gnu-maintenance: Really find the latest GNOME releases....Reported by Efraim Flashner <efraim@flashner.co.il> at <https://lists.gnu.org/archive/html/guix-devel/2015-12/msg00202.html>. * guix/gnu-maintenance.scm (latest-ftp-release): Call KEEP-FILE? on directories too. (latest-gnome-release)[even-minor-version?]: Protect again MINOR being false; change pattern to match VERSION with two or more numbers. Remove use of 'version-major+minor'. [even-numbered-tarball?]: Rename to... [even-numbered?]: ... this. Use 'package-name->name+version'. When VERSION is #f, check NAME. Ludovic Courtès
2015-12-09guix build: Add '--check'....* guix/derivations.scm (build-derivations): Add optional 'mode' parameter. * guix/scripts/build.scm (%default-options): Add 'build-mode'. (show-help, %options): Add '--check'. (guix-build): Honor 'build-mode' key of OPTS. Pass it to 'show-what-to-build' and 'build-derivations'. * doc/guix.texi (Invoking guix build): Document it. (Substitutes): Mention it. Ludovic Courtès
2015-12-09derivations: Determine what's built in 'check' mode....* guix/derivations.scm (substitution-oracle): Add #:mode parameter and honor it. (derivation-prerequisites-to-build): Likewise. [derivation-built?]: Take it into account. * guix/ui.scm (show-what-to-build): Add #:mode parameter. Pass it to 'substitute-oracle' and 'derivations-prerequisites-to-build'. * tests/derivations.scm ("derivation-prerequisites-to-build in 'check' mode"): New test. Ludovic Courtès
2015-12-08guix build: Add '--rounds'....* guix/scripts/build.scm (show-build-options-help) (%standard-build-options): Add --rounds. (set-build-options-from-command-line): Honor it. * doc/guix.texi (Invoking guix build): Document it. * doc/contributing.texi (Submitting Patches): Mention it. Ludovic Courtès
2015-12-08store: Allow clients to request multiple builds....* guix/store.scm (set-build-options): Add #:rounds parameter and honor it. * tests/store.scm ("build multiple times"): New test. Ludovic Courtès
2015-12-08gnu-maintenance: Exclude development releases from GNOME update candidates....Suggested by Efraim Flashner <efraim@flashner.co.il>. * guix/gnu-maintenance.scm (latest-ftp-release): Add #:keep-file? parameter and honor it. (latest-gnome-release)[%not-dot]: New variable. [even-minor-version?, even-numbered-tarball?]: New procedures. Pass EVEN-NUMBERED-TARBALL? as #:keep-file? argument. Ludovic Courtès
2015-12-07gnu-maintenance: ftp.gnome.org does not provide signatures....* guix/gnu-maintenance.scm (latest-ftp-release): Add #:file->signature parameter. Honor it. (latest-gnome-release): Pass #:file->signature. * guix/upstream.scm (coalesce-sources): Keep 'signature-urls' as #f unless both sources provide it. Ludovic Courtès
2015-12-07gnu-maintenance: Add GNOME updater....* guix/gnu-maintenance.scm (ftp-server/directory)[quirks]: Remove glib. (false-if-ftp-error): New macro. (latest-release*): Use it. (non-emacs-gnu-package?): Rename to... (pure-gnu-package?): ... this. Add call to 'gnome-package?'. (%gnu-updater): Adjust accordingly. (gnome-package?, latest-gnome-release): New procedures. (%gnome-updater): New variable. * guix/scripts/refresh.scm (%updaters): Add %GNOME-UPDATER. * doc/guix.texi (Invoking guix refresh): Mention it. Ludovic Courtès
2015-12-07gnu-maintenance: Generalize 'latest-ftp-release'....* guix/gnu-maintenance.scm (latest-release): Rename to... (latest-ftp-release): ... this. Add #:server and #:directory parameters. (latest-release): New procedure. Ludovic Courtès
2015-12-07refresh: Bail out when asked for a nonexistent updater....* guix/scripts/refresh.scm (lookup-updater): Call 'leave' when 'find' returns #f. Ludovic Courtès
2015-12-07gnu-maintenance: Do not look for releases in "w32" sub-directories....* guix/gnu-maintenance.scm (latest-release): Filter out "w32" directories. Ludovic Courtès
2015-12-07gnu-maintenance: Add tests for 'release-file?'....* tests/gnu-maintenance.scm: New file. * Makefile.am (SCM_TESTS): Add it. * guix/gnu-maintenance.scm (release-file?): Export. Ludovic Courtès
2015-12-07gnu-maintenance: Properly handle TeXmacs....* guix/gnu-maintenance.scm (ftp-server/directory): Add comment. (release-file?): Use 'string-ci=?' instead of 'equal?' when comparing project names. Ludovic Courtès
2015-12-07gnu-maintenance: Adjust tarball regexp for IceCat tarballs....* guix/gnu-maintenance.scm (%tarball-rx): Tweak to match IceCat tarball patterns. Ludovic Courtès
2015-12-07gnu-maintenance: Fix URLs returned by 'latest-release' for deep trees....With this, (latest-release "gcc") returns an <upstream-source> with URL: ftp://ftp.gnu.org/gnu/gcc/gcc-5.3.0/gcc-5.3.0.tar.gz Previous it would omit "gcc-5.3.0/" from the URL. Fixes a regression introduced in 0a7c5a0. * guix/gnu-maintenance.scm (latest-release)[file->url, file->source]: Add 'directory' parameter. Update users. Ludovic Courtès
2015-12-06edit: Don't assume that an emacs daemon is running....* guix/scripts/edit.scm (%editor): Use Emacs as a default value. Mathieu Lirzin
2015-12-06edit: Allow command line arguments in $VISUAL and $EDITOR....* guix/scripts/edit.scm (guix-edit): Fix the assumption that %editor is a one word command. Mathieu Lirzin
2015-12-04profiles: Silence GTK+ icon cache creation....Suggested by Ricardo Wurmus <rekado@elephly.net>. * guix/profiles.scm (gtk-icon-themes)[build]: Pass --quiet to 'gtk-update-icon-cache'. Ludovic Courtès
2015-12-04profiles: Silence GTK+ icon theme union....Suggested by Ricardo Wurmus <rekado@elephly.net>. * guix/profiles.scm (gtk-icon-themes)[build]: Pass 'union-build' a #:log-port argument. Ludovic Courtès
2015-12-04store: 'build-things' now supports older daemon protocols....This is a followup to d203d3d. * guix/store.scm (build-things): Add 'build/old'. Use it when STORE's minor version is less than 15. Ludovic Courtès
2015-12-03store: Add mode parameter to 'build-paths'....* guix/store.scm (%protocol-version): Set minor to 15. (build-mode): New enumerate type. (build-things): Add 'mode' parameter; pass it to the RPC. * tests/store.scm ("build-things, check mode"): New check. Ludovic Courtès
2015-12-03store: Update to the new daemon protocol....* guix/store.scm (%protocol-version): Set minor to 14. (open-connection): Add 'cpu-affinity' parameter and honor it. Ludovic Courtès
2015-12-01import: pypi: Updater silently ignores packages without source....Reported by Andreas Enge <andreas@enge.fr> at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00764.html>. * guix/import/pypi.scm (&missing-source-error): New error type. (latest-source-release): Raise it instead of using 'error'. (pypi->guix-package): Guard against it and use 'leave' to report the error. (latest-release): Guard against it and return #f when caught. Ludovic Courtès
2015-12-01guix build: Modularize transformation handling....* guix/scripts/build.scm (options/resolve-packages): Remove. (options->things-to-build, transform-package-source): New procedure. (%transformations): New variable. (options->transformation): New procedure. (options->derivations): Rewrite to use 'options->things-to-build' and 'options->transformation'. Ludovic Courtès
2015-12-01guix package: Refactor 'options->installable'....* guix/scripts/package.scm (options->upgrade-predicate) (store-item->manifest-entry): New procedures. * guix/scripts/package.scm (options->installable): Use them. Remove the 'packages-to-upgrade' and 'packages-to-install' variables by getting rid of a level of indirection. Ludovic Courtès
2015-12-01guix package: Move 'process-actions' out of sight....* guix/scripts/package.scm (process-actions): New procedure, moved from... (guix-package): ... here. Adjust accordingly. Ludovic Courtès
2015-12-01guix package: Formalize the list of actions....* guix/scripts/package.scm (roll-back-action, switch-generation-action) (delete-generations-action, manifest-action): New procedures. (%actions): New variable. * guix/scripts/package.scm (guix-package)[process-action]: Rewrite to traverse %ACTIONS. Ludovic Courtès
2015-12-01guix package: Move 'build-and-use-profile' out of sight....* guix/scripts/package.scm (build-and-use-profile): New procedure. Adapted and moved from... (guix-package)[process-actions]: ... here. Adjust call sites. Ludovic Courtès
2015-12-01guix package: Move a couple of procedures out of sight....* guix/scripts/package.scm (ensure-default-profile, process-query): New procedures, moved from... (guix-package): ... here. Ludovic Courtès
2015-12-01guix package: Remove unnecessary use of (%store)....* guix/scripts/package.scm (delete-matching-generations): Use STORE instead of (%store). Ludovic Courtès
2015-11-29gnu: python: Set SOURCE_DATE_EPOCH to 1 instead of 0....* gnu/packages/python.scm (python-2)[arguments]: Set SOURCE_DATE_EPOCH to 1 to match what the daemon does. * guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): Likewise. Ludovic Courtès
2015-11-29gnu: python-2: Honor 'SOURCE_DATE_EPOCH'....* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file. * gnu/packages/python.scm (python-2)[source]: Use it. [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase. * guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New procedure. (%standard-phases): Add it. * gnu-system.am (dist_patch_DATA): Add patch. Ludovic Courtès
2015-11-29refresh: Check updater availability at run time....This is a followup to b68d2db, which added a check for updaters at macro-expansion time. The problem is that, when running 'guix pull', Guile-JSON is found, so the PyPi updater (say) is added to %UPDATERS, but then at run time Guile-JSON might be missing. Reported by orbea on #guix. * guix/scripts/refresh.scm (maybe-updater): Rewrite as 'syntax-rules'. Produce code that checks conditions at run time. (list-updaters): Update docstring. Ludovic Courtès
2015-11-29http-client: 'http-fetch' converts strings to URIs....* guix/http-client.scm (http-fetch): Use 'string->uri' if URI is a string. Fixes a regression introduced in 8a5063f. Ludovic Courtès
2015-11-29guix build: Factorize build log query....* guix/scripts/build.scm (show-build-log): New procedure. (guix-build): New variable 'items'. Use it and 'show-build-log'. Ludovic Courtès
2015-11-28environment: Set build options early on....This fixes a bug whereby some options, such as #:substitute-urls, would be passed to the daemon too late to have an effect. * guix/scripts/environment.scm (build-inputs): Remove call to 'set-build-options-from-command-line*'. (guix-environment): Add call to 'set-build-options-from-command-line' as early as possible. Ludovic Courtès
2015-11-28lint: Do not report already-patched vulnerabilities....* guix/scripts/lint.scm (patch-file-name): New procedure. (check-vulnerabilities): Use it to filter out patched vulnerabilities. * tests/lint.scm ("cve: one patched vulnerability"): New test. Ludovic Courtès