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2020-01-15Merge branch 'master' into core-updatesMarius Bakke
2020-01-14build-system/texlive: Update to texlive-2019.3, revision 51265.Marius Bakke
* guix/build-system/texlive.scm (%texlive-tag): Change to "2019.3". (%texlive-revision): Change to 51265.
2020-01-12lint: Check for more packages which should be native.Danny Milosavljevic
* guix/lint.scm (check-inputs-should-be-native): Add gtk-doc.
2020-01-12build: asdf-build-system: Improve reproducibility.Guillaume Le Vaillant
* guix/build/asdf-build-system.scm (copy-files-to-output): Reset timestamps of source files before compiling.
2020-01-12deprecation: Add a two-element form for simple aliases.Ludovic Courtès
* guix/deprecation.scm (define-deprecated): Add a two-element form for simple aliases: (define-deprecated old new).
2020-01-11Merge branch 'master' into core-updatesMarius Bakke
2020-01-09channels: Provide a hint when the 'guix' channel is lacking.Ludovic Courtès
Fixes <https://bugs.gnu.org/39043>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * guix/channels.scm (channel-instance-derivations): Raise '&fix-hint' condition in addition to the '&message' condition.
2020-01-09lint: Check for more packages which should be native.Danny Milosavljevic
* guix/lint.scm (check-inputs-should-be-native): Add autoconf, automake, bison, dejagnu, desktop-file-utils, doxygen, flex, gettext, gobject-introspection, googletest-source, groff, help2man, libtool, swig, qmake, qttools, texinfo, xorg-server-for-tests, yelp-tools.
2020-01-08build-system/clojure: Provide only the right modules in scope.Ludovic Courtès
Previously, we used to have a whole bunch of (guix build *-build-system) modules in scope, which, for example, meant that '%standard-phases' was clashing. This change clarifies it. * guix/build-system/clojure.scm (%default-modules): New variable. (clojure-build): Change the default value of #:modules and that of #:phases.
2020-01-08build: asdf-build-system: Make sbcl-* Lisp packages reproducible.Guillaume Le Vaillant
The '*.fasl' files produced by SBCL contain the mtime of the source file (see commit 72843d7ce32bd615f64a0326cf891658b5724ead of SBCL's code repository). As asdf-build-system makes a copy of the source files before compiling them, we must set the mtime of these copies to the same date as the originals for the build to be reproducible. * guix/build/asdf-build-system.scm (copy-files-to-output): Keep the modification time of the original source files.
2020-01-07download, git: Refer to the right module in 'module-use!' call.Ludovic Courtès
This fixes a regression introduced in 6a7c4636d4dec47eefa03c95da5a1315bd0e0413. * guix/build/download.scm (load-gnutls): Call 'resolve-module' instead of 'current-module'. * guix/git.scm (load-git-submodules): Likewise.
2020-01-07More module autoload changes.Ludovic Courtès
This is a followup to 6a7c4636d4dec47eefa03c95da5a1315bd0e0413. * guix/scripts/build.scm: Adjust #:autoload clauses. * guix/scripts/gc.scm: Likewise.
2020-01-06Adjust module autoloads.Ludovic Courtès
In Guile < 2.9.7, autoloading a module would give you access to all its bindings. In future versions, autoloading a module gives access only to the listed bindings, as per #:select (see <https://bugs.gnu.org/38895>). This commit adjusts autoloads to the new semantics, allowing Guix to be built with Guile 2.9.7/2.9.8. * guix/build/download.scm <top level>: Remove call to 'module-autoload!'. (load-gnutls): New procedure. (tls-wrap): Call it. * guix/git.scm <top level>: Remove call to 'module-autoload!'. (load-git-submodules): New procedure. (update-submodules): Call it instead of 'resolve-interface'. * gnu/bootloader/grub.scm: Replace #:autoload with #:use-module. * gnu/packages.scm: Likewise. * gnu/packages/ssh.scm: Likewise. * gnu/packages/tex.scm: Likewise. * gnu/services/cuirass.scm: Likewise. * gnu/services/mcron.scm: Likewise. * guix/lint.scm: Augment list of bindings in #:autoload. * guix/scripts/build.scm: Likewise. * guix/scripts/gc.scm: Likewise. * guix/scripts/pack.scm: Likewise. * guix/scripts/publish.scm: Likewise. * guix/scripts/pull.scm: Likewise. * guix/utils.scm: Remove unnecessary #:autoload clauses; replace one of them with #:use-module.
2020-01-04gexp: Add 'raw-derivation-file'.Ludovic Courtès
* guix/gexp.scm (<raw-derivation-file>): New record type. (raw-derivation-file-compiler): New gexp compiler. * tests/gexp.scm ("lower-gexp, raw-derivation-file") ("raw-derivation-file"): New tests.
2020-01-04build-system/guile: Add #:implicit-inputs?.Jan Nieuwenhuizen
* guix/build-system/guile.scm (lower): Add implicit-inputs? keyword parameter. [private-keywords]: Add it. Honor it.
2020-01-03import: cran: Fix file descriptor leak.Ludovic Courtès
Fixes <https://bugs.gnu.org/38836>. Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/import/cran.scm (bioconductor-packages-list): Close the port returned by 'http-fetch/cached'. (fetch-description): Likewise.
2020-01-03download: Do not leak file descriptors on TLS ports.Ludovic Courtès
Fixes <https://bugs.gnu.org/20145>. * guix/build/download.scm (%tls-ports, register-tls-record-port): Remove. (tls-wrap): Remove call to 'register-tls-record-port'. Return a custom binary input/output port instead. This is a backport of what Guile 2.2's (web client) module has been doing. (close-connection): Define as an alias for 'close-port'. * guix/http-client.scm (http-fetch): Remove #:keep-alive? parameter, which was ignored and unused. Pass #:keep-alive? #f to 'http-get'. * guix/lint.scm (probe-uri): Use 'close-port' instead of 'close-connection'. * guix/scripts/substitute.scm (http-multiple-get): Likewise.
2020-01-03gexp: 'gexp->script' marks its result as non-offloadable and non-substitutable.Ludovic Courtès
* guix/gexp.scm (gexp->script): Pass #:local-build? and #:substitutable? to 'gexp->derivation'.
2020-01-03gnu: uglify-js: Move back next to sbcl-cl-uglify-js definition.Pierre Neidhardt
This fixes the bug which prevented uglify-js from being defined properly, and cascaded back to all Common Lisp packages. * gnu/packages/bioinformatics.scm: Replace javascript module with lisp-xyz. * gnu/packages/cran.scm: Use lisp-xyz module. * gnu/packages/javascript.scm (uglify-js): Move from here... * gnu/packages/lisp-xyz.scm: ... To here. * gnu/packages/web.scm: Replace javascript module with lisp-xyz. * guix/build-system/minify.scm: Find uglify-js in the lisp-xyz module.
2020-01-02ui: It's 2020 now!Ludovic Courtès
* guix/ui.scm (show-version-and-exit): Change year to 2020.
2019-12-31Merge remote-tracking branch 'master' into core-updates.Mathieu Othacehe
2019-12-30import: crate: Honor crate version for recursive imports.Ludovic Courtès
Fixes <https://bugs.gnu.org/38709>. Reported by Valentin Ignatev <valentignatev@gmail.com>. * guix/import/crate.scm (crate-recursive-import): Add optional 'version' parameter and honor it. * guix/scripts/import/crate.scm (guix-import-crate): Pass VERSION as 2nd argument to 'crate-recursive-import'.
2019-12-29profiles: Fix profile-derivation cross-compilation.Mathieu Othacehe
* guix/store.scm (current-target-system): New exported monadic procedure. * guix/profiles.scm (profile-derivation): Set target at bind time using the above procedure.
2019-12-29inferior: Add 'inferior-package-provenance'.Ludovic Courtès
* guix/inferior.scm (inferior-package-provenance): New procedure.
2019-12-29pack: Save provenance information when using '--manifest'.Ludovic Courtès
* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: Remove 'provenance', and add 'with-provenance' procedure. Wrap 'cond' form in 'with-provenance'.
2019-12-29guix package: Save provenance information when using '--manifest'.Ludovic Courtès
Fixes <https://bugs.gnu.org/38673>. Reported by zimoun <zimon.toutoune@gmail.com>. * guix/describe.scm (manifest-entry-with-provenance): New procedure. * guix/scripts/package.scm (process-actions): Use it when FILES is non-empty.
2019-12-29profiles: Add 'map-manifest-entries'.Ludovic Courtès
* guix/scripts/pack.scm (map-manifest-entries): Move to... * guix/profiles.scm (map-manifest-entries): ... here.
2019-12-27guix: emacs-utils: Add emacs-batch-disable-compilation.Leo Prikler
* guix/build/emacs-utils.scm (emacs-batch-disable-compilation): New procedure. Signed-off-by: Brett Gilio <brettg@gnu.org>
2019-12-27git: 'commit-difference' takes a list of excluded commits.Ludovic Courtès
* guix/git.scm (commit-closure): Add 'visited' optional parameter. (commit-difference): Add 'excluded' optional parameter; pass second argument to 'commit-closure'. * tests/git.scm ("commit-difference, excluded commits"): New test.
2019-12-26profiles: Fix profile-derivation cross-compilation.Mathieu Othacehe
* guix/store.scm (current-target-system): New exported monadic procedure. * guix/profiles.scm (profile-derivation): Set target at bind time using the above procedure.
2019-12-26download: Enable TLS 1.3.Marius Bakke
This reverts commit e4ee84202633636b4c8cef4a332f0c74912a3b23. * guix/build/download.scm (tls-wrap): Dot not disable TLS 1.3.
2019-12-26gnu: Remove squashfs-tools-next.Ricardo Wurmus
* gnu/packages/compression.scm (squashfs-tools-next): Remove variable. * guix/scripts/pack.scm (squashfs-image, guix-pack): Use squashfs-tools. * tests/pack.scm: Use squashfs-tools.
2019-12-26build-system: linux-module: Add substitutable keyword.Efraim Flashner
* guix/build-system/linux-module.scm (linux-module-build) Add substitutable keyword.
2019-12-26guix: swh: Fix again example URI in comment for <origin>.Björn Höfling
This is a follow up to 6afea7489b76c8db58d4f389fdbedc7c2b8992bd * guix/swh.scm(<origin>): Write 'https' instead of 'ttps' for the URL.
2019-12-23build-system: qt: Adjust indentation.Hartmut Goebel
* guix/build-system/qt.scm (qt-build, qt-cross-build): Adjust indentation.
2019-12-23build-system: qt: Actually use qt-build-system, not cmake-build-system.Hartmut Goebel
When the qt-build-system was created, based on the cmake-build-system, some references to cmake have been missed to be changed. * guix/build-system/qt.scm (qt-build, qt-cross-build)[modules]: Use qt-build-system, not cmake-build-system. [builder]: Call qt-build, not cmake-build. Coauthored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-22gexp: Add system and target support to gexp->file.Mathieu Othacehe
* guix/gexp.scm (gexp->file): Add system and target arguments and pass them to gexp->derivation and load-path-expression calls, (scheme-file-compiler): adapt accordingly to pass system and target arguments.
2019-12-22gexp: Add system and target support to gexp->file.Mathieu Othacehe
* guix/gexp.scm (gexp->file): Add system and target arguments and pass them to gexp->derivation and load-path-expression calls, (scheme-file-compiler): adapt accordingly to pass system and target arguments.
2019-12-21guix system: Honor the build options in 'delete-generations'.Ludovic Courtès
Until now, 'guix system delete-generations' would ignore OPTS; for example, it would not enable #:print-extended-build-trace? & co., leading to suboptimal output. * guix/scripts/system.scm (process-command)[with-store*]: New macro. Use it for 'delete-generations', 'switch-generation', and 'roll-back'.
2019-12-20gnupg: 'gnupg-verify*' returns a status symbol.Ludovic Courtès
This allows callers to distinguish between signature verification failure and missing key. * guix/gnupg.scm (gnupg-receive-keys): Return true on success. (gnupg-verify*): Check return value of 'gnupg-receive-keys'. Return two values, the first one being a symbol. * guix/upstream.scm (download-tarball): Get the two return values of 'gnupg-verify*', and match on the first one. * gnu/packages/bash.scm (download-patches): Check the first return value of 'gnupg-verify*'.
2019-12-19gnupg: Compile regexps only once.Ludovic Courtès
This halves the run time on a large number of subsequent 'gnupg-verify' calls. * guix/gnupg.scm (sigid-rx, goodsig-rx, validsig-rx, expkeysig-rx) (errsig-rx): New variables, lifted from... (gnupg-verify)[status-line->sexp]: ... here.
2019-12-19guix: Fix %hurd-systems list.Efraim Flashner
* guix/packages.scm (%hurd-systems): Replace i585-gnu with i586-gnu.
2019-12-18download: Remove ramses.wh2.tu-dresden.de kernel mirror.Mark H Weaver
* guix/download.scm (%mirrors): Remove ramses.wh2.tu-dresden.de, which seems to no longer work.
2019-12-18gnupg: 'gnupg-status-missing-key?' returns a fingerprint when possible.Ludovic Courtès
Until then, 'gnupg-status-missing-key?' would return a key id. Its user, 'gnupg-verify*', would then fetch a key with that ID from key servers, thus possibly the wrong key (due to key ID collisions). If it did fetch the wrong key, the effect would be a signature verification failure down the path--e.g., in "guix refresh -u". * guix/gnupg.scm (gnupg-verify)[maybe-fingerprint]: New procedure. [status-line->sexp](errsig-rx): Add parenthetical expression at the end. Fetch it and add it to the 'signature-error' sexp. (gnupg-status-missing-key?): Match the whole 'signature-error' sexp and return preferably the fingerprint rather than KEY-ID. (gnupg-receive-keys): Rename 'key-id' parameter to 'fingerprint/key-id'.
2019-12-18gnupg: 'gnupg-status-good-signature?' no longer returns a key ID.Ludovic Courtès
Returning a key ID was inconsequential because the only user of 'gnupg-status-good-signature?', (guix upstream) (via 'gnupg-verify*'), would not check the return value as long as it's true. * guix/gnupg.scm (gnupg-status-good-signature?): Return a fingerprint/user pair instead of key-id/user. (gnupg-verify*): Mention it in docstring.
2019-12-18guix: swh: Fix example URI in comment for <origin>.Björn Höfling
This is a one-character follow-up to 356a79becc4061d158c68718ad169abac1ab672f Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>. * guix/swh.scm(<origin>): Remove a slash from example URI witin a comment.
2019-12-18gexp: Allow character literals in GEXP->SEXP.Marius Bakke
Fixes <https://bugs.gnu.org/38628>. * tests/gexp.scm ("lower-gexp, character literal"): New test. * guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types. * guix/repl.scm (self-quoting?): Likewise. * gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
2019-12-17swh: Fix API call for getting origin.Björn Höfling
When using the archival linter, git origins already in the archive where not recognized due to an API change and where repeatedly asked for archival. This is fixed here. * guix/swh.scm (lookup-origin): Fix API URI for getting origin. (<origin>): Fix comment with API URI example.
2019-12-15guix: Fix typo.Efraim Flashner
This is a follow-up to e8cbebb4769328f6ad49a4b5868f9c935e7e5372. * guix/profiles.scm (gtk-im-modules): Corectly refer to gtk+-2 package.
2019-12-15guix: Upgrade to Bioconductor 3.10.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10. * guix/import/cran.scm (%bioconductor-version): Same.
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