| Age | Commit message (Expand) | Author |
|---|
| 2017-11-09 | ui: Add an 'unbound-variable' exception printer....* guix/ui.scm (print-unbound-variable-error): New variable.
Use it as the 'unbound-variable' printer.
| Ludovic Courtès |
| 2017-11-09 | ui: Provide hints for unbound-variable errors....* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Handle 'unbound-variable'.
| Ludovic Courtès |
| 2017-11-09 | ui: Add 'display-hint'....* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Use it.
| Ludovic Courtès |
| 2017-11-08 | ui: Define and honor '&error-location' and '&fix-hint' conditions....* guix/utils.scm (&error-location, &fix-hint): New condition types.
* guix/ui.scm (report-load-error): Handle them.
(call-with-error-handling): Honor '&error-location'.
| Ludovic Courtès |
| 2017-11-08 | ui: Introduce (guix i18n)....* guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move
to...
* guix/i18n.scm: ... here. New file.
| Ludovic Courtès |
| 2017-11-07 | guix: Add archive support for bioconductor-uri....* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
| Ricardo Wurmus |
| 2017-11-07 | import: cran: Use Bioconductor 3.6 helpers....* guix/import/cran.scm (bioconductor-mirror-url): Remove procedure.
(fetch-description): Extract DESCRIPTION file from tarball for Bioconductor
packages.
(latest-bioconductor-release): Use latest-bioconductor-package-version.
| Ricardo Wurmus |
| 2017-11-07 | import: cran: Add support for Bioconductor 3.6....* guix/import/cran.scm (%bioconductor-version,
%bioconductor-packages-list-url): New variables.
(bioconductor-packages-list, latest-bioconductor-package-version): New
procedures.
| Ricardo Wurmus |
| 2017-11-07 | import: utils: Add string helpers....* guix/import/utils.scm (read-lines, chunk-lines): New procedures.
| Ricardo Wurmus |
| 2017-11-07 | refresh: Account for hidden packages....Suggested by Marius Bakke <mbakke@fastmail.com>
in <https://bugs.gnu.org/29177>.
* guix/scripts/refresh.scm (all-packages): Pass #:select? to
'fold-packages'.
| Ludovic Courtès |
| 2017-11-07 | compile: Fix VPATH builds....Fixes <https://bugs.gnu.org/29091>.
Reported by Eric Bavier <bavier@cray.com>.
* guix/build/compile.scm (relative-file): New procedure.
(load-files): Use it before calling 'file-name->module-name'.
(compile-files): Likewise before calling 'scm->go'.
* guix/build/pull.scm (build-guix): Remove 'with-directory-excursion'
and file name hack from ce33c3af76b0e5c68cc42dddf2b9c4b017386fd8.
Pass OUT to 'all-scheme-files'.
| Ludovic Courtès |
| 2017-11-07 | Fix ambiguous imports....* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
| Ludovic Courtès |
| 2017-11-05 | guix: records: Add match-record....* guix/records.scm: New syntax-rule.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| nee |
| 2017-11-01 | download: Refresh the cpan.org mirror list....* guix/download.scm (%mirrors)[cpan]: Update the list of CPAN mirrors (of
which several are dead) with a more-or-less geographically diverse selection.
| Tobias Geerinckx-Rice |
| 2017-10-30 | Revert "import: cpan: Use HTTPS for home pages."...This reverts commit 29f7bf59d5d4d4b848eaedc6766bb4e02cae20d3: HTTPS support
at search.cpan.org is unreliable, at best. Don't rely on it.
| Tobias Geerinckx-Rice |
| 2017-10-29 | import: cpan: Use HTTPS for home pages....* guix/import/cpan.scm (cpan-home): Use HTTPS.
* tests/cpan.scm ("cpan->guix-package"): Expect it.
| Tobias Geerinckx-Rice |
| 2017-10-29 | import: cpan: Actually use CPAN-HOME....* guix/import/cpan.scm (cpan-module->sexp): Use the CPAN-HOME procedure.
| Tobias Geerinckx-Rice |
| 2017-10-29 | import: cpan: Add trailing "/" to CPAN-HOME....Prevent regression after commit e4bc1727302b0e1e255ea5cf4e2ccf33cafe7296.
* guix/import/cpan.scm (cpan-home): Add trailing "/".
| Tobias Geerinckx-Rice |
| 2017-10-28 | import: cpan: Add trailing "/" on home-page....This appeases 'guix lint', which otherwise complains about permanent
redirects.
* guix/import/cpan.scm (cpan-module->sexp): Add trailing "/" on home-page.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
| Eric Bavier |
| 2017-10-28 | import: cpan: Propagate imported dependencies....This is most often the need for perl module dependencies.
* guix/import/cpan.scm (cpan-module->sexp): 'inputs -> 'propagated-inputs.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
| Eric Bavier |
| 2017-10-28 | graph: Remove mention of Graphviz from the summary line....* guix/scripts/graph.scm (show-help): Remove mention of Graphviz from
the summary line.
| Ludovic Courtès |
| 2017-10-28 | import: elpa: Do not abort when failing to download the archive....* guix/import/elpa.scm (elpa-fetch-archive): Use 'http-fetch/cached'
directly instead of 'call-with-downloaded-file'. This ensures we don't
just abort when networking access is lacking, which is required to allow
'guix refresh -c refresh' to proceed.
| Ludovic Courtès |
| 2017-10-28 | import: github: Gracefully handle multiple-URL origins....* guix/import/github.scm (latest-release)[origin-github-uri]: New
procedure. Use it.
| Ludovic Courtès |
| 2017-10-28 | lint: 'refresh' gracefully handles lack of networking access....* guix/scripts/lint.scm (check-for-updates): Wrap
'package-latest-release*' call in 'with-networking-fail-safe'.
| Ludovic Courtès |
| 2017-10-28 | lint: Extract network-related exception handling....* guix/scripts/lint.scm (call-with-networking-fail-safe): New procedure.
(with-networking-fail-safe): New macro.
(current-vulnerabilities*): Rewrite in terms of 'with-networking-fail-safe'.
| Ludovic Courtès |
| 2017-10-28 | scripts: Factorize option parsing sans 'GUIX_BUILD_OPTIONS'....* guix/scripts.scm (parse-command-line): Add #:build-options? parameter
and honor it.
* guix/scripts/challenge.scm (guix-challenge): Use 'parse-command-line'
with #:build-options? #f instead of 'args-fold*'.
* guix/scripts/gc.scm (guix-gc): Likewise.
* guix/scripts/graph.scm (guix-graph): Likewise.
* guix/scripts/hash.scm (guix-hash): Likewise.
* guix/scripts/lint.scm (guix-lint): Likewise.
* guix/scripts/refresh.scm (guix-refresh): Likewise.
* guix/scripts/size.scm (guix-size): Likewise.
* guix/scripts/weather.scm (guix-weather): Likewise.
| Ludovic Courtès |
| 2017-10-27 | scripts: Use 'args-fold*' for command that do not honor build flags....Fixes <https://bugs.gnu.org/28984>.
Reported by Eric Bavier.
* guix/scripts/challenge.scm (guix-challenge): Use 'args-fold*' instead
of 'parse-command-line'.
* guix/scripts/size.scm (guix-size): Likewise.
* guix/scripts/weather.scm (guix-weather): Likewise.
| Ludovic Courtès |
| 2017-10-26 | build-system/go: Fix installation path of executable files....* guix/build/go-build-system.scm (setup-environment): Set GOBIN correctly.
| Leo Famulari |
| 2017-10-25 | challenge: Display an overall summary....* guix/scripts/challenge.scm (summarize-report-list): New procedure.
(guix-challenge): Use it.
* doc/guix.texi (Invoking guix challenge): Adjust command output in
example.
| Ludovic Courtès |
| 2017-10-25 | substitute: Don't send more than 1000 requests in a row....Fixes <https://bugs.gnu.org/28731>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.
* guix/scripts/substitute.scm (at-most): New procedure.
(http-multiple-get): Use it to send at most 1000 requests at once.
| Ludovic Courtès |
| 2017-10-25 | guix package: '--list-available' does not show superseded packages....* guix/scripts/package.scm (process-query) <'list-available>: Filter out
P if it matches 'package-superseded'.
| Ludovic Courtès |
| 2017-10-24 | build-system/go: Parameterize installing the source code....* guix/build-system/go.scm (go-build): Add install-source? key.
* guix/build/go-build-system.scm (install-source): Check if
install-source? is true.
| Leo Famulari |
| 2017-10-24 | build-system/go: Strip the Go binaries with the native tool....* guix/build/go-build-system.scm (build): Tell the Go linker to strip some
symbol tables and debugging information.
| Leo Famulari |
| 2017-10-23 | pull: Hide compilation warnings....* guix/build/pull.scm (build-guix): Bind 'current-warning-port' to a
void port.
| Ludovic Courtès |
| 2017-10-23 | pull: Add (guix build compile) to the mix....Fixes <https://bugs.gnu.org/28956>.
Reported by Leo Famulari <leo@famulari.name>.
* build-aux/build-self.scm (build): Add (guix build compile) to
#:modules.
* guix/build/pull.scm (build-guix): Wrap 'compile-files' call in
'with-directory-excursion'. Strip "./" from FILES when passing it to
'compile-files'.
| Ludovic Courtès |
| 2017-10-22 | gexp: Add 'directory-union'....* gnu/services.scm (directory-union): Move to...
* guix/gexp.scm (directory-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
| Ludovic Courtès |
| 2017-10-22 | gexp: Add 'file-union'....* gnu/services.scm (file-union): Move to...
* guix/gexp.scm (file-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
| Ludovic Courtès |
| 2017-10-22 | discovery: Move 'file-name->module-name' to (guix modules)....* guix/discovery.scm (file-name->module-name): Move to...
* guix/modules.scm (file-name->module-name): ... here.
* guix/build/compile.scm: Use (guix modules) instead of (guix discovery).
| Ludovic Courtès |
| 2017-10-22 | build: Factorize module compilation in (guix build compile)....* guix/build/compile.scm: New file.
* Makefile.am (MODULES): Add it.
* build-aux/compile-all.scm: Use it.
(warnings, file->module, load-module-file)
(%default-optimizations, %lightweight-optimizations)
(optimization-options, compile-file*): Remove.
<top level>: Use 'compile-files'.
* guix/build/pull.scm (%default-optimizations)
(%lightweight-optimizations, optimization-options): Remove.
(build-guix): Rewrite as a call to 'compile-files'.
* guix/discovery.scm (file-name->module-name): Export.
| Ludovic Courtès |
| 2017-10-21 | Use HTTPS for bioconductor.org....* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
| Tobias Geerinckx-Rice |
| 2017-10-19 | download: Download a nar when a VCS checkout fails....Fixes <https://bugs.gnu.org/28709>.
* guix/build/download-nar.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/cvs-download.scm (cvs-fetch)[zlib, config.scm, modules]: New
variables.
[build]: Use MODULES. Add call to 'download-nar'.
* guix/git-download.scm (git-fetch): Likewise.
* guix/hg-download.scm (hg-fetch): Likewise.
| Ludovic Courtès |
| 2017-10-19 | Add (guix progress)....Among other things, this removes (guix utils), (guix ui), (guix config),
etc. from the closure of (guix build download), as was the case since
798648515b77507c242752457b4dc17c155bad6e.
* guix/utils.scm (<progress-reporter>, call-with-progress-reporter):
Move to...
* guix/progress.scm: ... here. New file.
* Makefile.am (MODULES): Add it.
* guix/build/download.scm (current-terminal-columns)
(nearest-exact-integer, duration->seconds, seconds->string)
(byte-count->string, progress-bar, string-pad-middle)
(rate-limited, progress-reporter/file, dump-port*)
(time-monotonic): Move to progress.scm.
* guix/scripts/download.scm: Adjust accordingly.
* guix/scripts/substitute.scm: Likewise.
| Ludovic Courtès |
| 2017-10-19 | download: Make 'http-fetch' public....* guix/build/download.scm (http-fetch): Remove 'file' parameter. Change
to return an input port and the content-length. Make public.
(url-fetch): Adjust accordingly.
| Ludovic Courtès |
| 2017-10-19 | download: Remove old-Guile leftovers....This is a followup to 36626c556ed75219bce196ac93d148f6b9af984c.
* guix/build/download.scm (http-fetch): Rename 'port-or-bv' to 'port'.
Assume (port? port) is always true, and remove other branch.
| Ludovic Courtès |
| 2017-10-17 | guix: substitute: Report the last progress in the child process....Fixes <https://bugs.gnu.org/28756>.
* guix/utils.scm (filtered-port): Close the 'input' port for the current
process, and close it upon exit in the child process.
* guix/scripts/substitute.scm (progress-substitution): Display "\n\n" after
the reporter has finished.
| 宋文武 |
| 2017-10-15 | emacs-build-system: Change how patch-el-files substitutes commands....Previously the regex would match from /bin/ to a closing quote. However, this
is greedy, so will match up until the last ". This causes problems when there
are several quotes on the same line, for example:
org-effectiveness.el:
196: (call-process "/bin/bash" nil t nil "-c" strplot)
Therefore, change . to \S so that it doesn't include whitespace
characters. Changing to a lazy quantifier would be an option, if that were
supported.
* guix/build/emacs-build-system.scm (patch-el-files): Change the regular
expression used.
| Christopher Baines |
| 2017-10-15 | emacs-build-system: Handle missing programs when patching....Previously the string-append here would error, which isn't useful as it
doesn't tell you which command couldn't be found. To make the error
actionable, catch it earlier, and explicitly error.
* guix/build/emacs-build-system.scm (patch-el-files): Handle (which cmd)
returning #f.
| Christopher Baines |
| 2017-10-12 | build: Add the Go build system....* guix/build-system/go.scm,
guix/build/go-build-system.scm: New files.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document the go-build-system.
| Leo Famulari |
| 2017-10-12 | lint: 'home-page' checker reports permanent redirects....* guix/scripts/lint.scm (probe-uri): Add special case for HTTP 301.
(validate-uri): Likewise.
* tests/lint.scm ("home-page: 301, invalid")
("home-page: 301 -> 200", "home-page: 301 -> 404")
("source: 301 -> 200", "source: 301 -> 404"): New tests.
| Ludovic Courtès |
| 2017-10-12 | tests: Support multiple HTTP server instances....* guix/tests/http.scm (%http-server-socket): Turn into...
(open-http-server-socket): ... this procedure.
(http-server-can-listen?): New procedure.
(http-write, %http-server-lock, %http-server-ready)
(http-open, stub-http-server): Move to 'call-with-http-server' body.
(call-with-http-server): Add #:headers parameter.
(with-http-server): Add an additional pattern with headers.
* tests/derivations.scm: Use (http-server-can-listen?) instead
of (force %http-server-socket).
* tests/lint.scm: Likewise.
| Ludovic Courtès |
