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2021-11-16tests: Factorize 'file=?'....* guix/tests.scm (file=?): Add optional 'stat' parameter. Add fast patch comparing inode numbers. * tests/gexp.scm ("imported-files with file-like objects"): Remove 'file=?' procedure and use the one from (guix tests). Ludovic Courtès
2021-11-16build-system/julia: Enable Julia Pkg to find installed packages....Julia's built-in package manager (Pkg) looks for packages in JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string encoding package UUID and SHA1 of files. The link-depot phase creates a link at the correct location to allow Pkg to find packages that were already installed by Guix. * guix/build/julia-build-system.scm (link-depot): New phase. (%package-path): Modified package path from packages/ to loadpath/. (project.toml->uuid): New procedure, retrive package uuid from TOML file. (precompile, check): Adjust to the change in paths. (%standard-phases): Add link-depot phase. (julia-build): Add julia-package-uuid keyword. * guix/build-system/julia.scm (julia-build): Also use the julia-package-uuid keyword. * gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll, julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll, julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll, julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll, julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll, julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll, julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll, julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll, julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll, julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll, julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll, julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll, julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll, julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll, julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll, julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll, julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll, julia-xorg-libxfixes-jll, julia-xorg-libxi-jll, julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll, julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll, julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll, julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll, julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll, julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll) [argument]: Adjust the order of the phases to the change in the julia-build-system. * gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus, julia-dataframes, julia-datavalues, julia-distances, julia-documenter, julia-dualnumbers, julia-ellipsisnotation, julia-expronicon, julia-fileio, julia-fixedpointnumbers, julia-functionwrappers, julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur, julia-geometrybasics, julia-imagemagick, julia-infinity, julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib, julia-optimtestproblems, julia-orderedcollections, julia-prettytables, julia-pycall, julia-quadmath, julia-safetests, julia-stackviews) [arguments]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory add package-name-uuid keyword argument to packages without Project.toml file. * gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-11-14build: wrap-qt-program: Fix typo....* gnu/build/qt-utils.scm (wrap-qt-program): Fix spelling of "program". Vagrant Cascadian
2021-11-14environment: Fix ‘--check’ with exported PS1 variable....If your .bashrc (unnecessarily) exports PS1 and you’re in a non-login shell, Guix crashes: user@popigai:~$ guix shell --check coreutils guix shell: checking the environment variables visible from shell '/bin/bash'... Backtrace: 14 (primitive-load "/home/user/.config/guix/current/bin/g…") In guix/ui.scm: 2206:7 13 (run-guix . _) 2169:10 12 (run-guix-command _ . _) In ice-9/boot-9.scm: 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) 1752:10 10 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 658:37 9 (thunk) 1320:8 8 (call-with-build-handler _ _) 1320:8 7 (call-with-build-handler #<procedure 7fe393b7c420 at g…> …) In guix/status.scm: 800:4 6 (call-with-status-report _ _) In guix/scripts/environment.scm: 951:12 5 (_) In guix/store.scm: 2119:24 4 (run-with-store #<store-connection 256.99 7fe39627e500> …) In guix/scripts/environment.scm: 521:35 3 (_ _) In unknown file: 2 (string=? ("PS1" . "${debian_chroot:+($debian_chroot)…") …) In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure string=: Wrong type argument in position 1 (expecting string): ("PS1" . "${debian_chroot:+($debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]${EXTRA}\\$ ") user@popigai:~$ This is because the match pattern doesn’t expect `(vhash-assoc "PS1" actual)` to return a pair. * guix/scripts/environment.scm (validate-child-shell-environment): Change match pattern to expect a pair. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thiago Jung Bauermann
2021-11-13guix: packages: Clarify that list is a list of <license> records....* guix/packages/packages.scm (<package>): Clarify that the license field takes a list of licenses rather than a generic list. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> jgart
2021-11-12import: utils: Add more licenses and extend their detection....* guix/import/utils.scm (spdx-string->license): Identify more licenses (CC-BY-4.0, Freetype, HPND). * guix/licenses.scm: Add a comment that mentions "MIT" so that people who grep for MIT end up there. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Attila Lendvai
2021-11-11build: meson: Replace the 'test-target' argument by 'test-options'....This change is motivated by the need to disable the default 30 seconds timeout that Meson uses (see: https://gitlab.gnome.org/GNOME/glib/-/issues/2522), and also by desire to specify extra options to run the check phase without having to override it. * guix/build-system/meson.scm (meson-build) <test-target>: Replace argument with... <test-options>: ... this one. * guix/build/meson-build-system.scm (check): Invoke 'meson test' instead of 'ninja test-target', as the former is configurable via options. * doc/guix.texi (Build Systems) <meson-build-system>: Update doc. Maxim Cournoyer
2021-11-11profiles: Add a gdk-pixbuf-loaders-cache-file hook....This paves the way toward properly fixing https://issues.guix.gnu.org/50957. * guix/profiles.scm (gdk-pixbuf-loaders-cache-file): Add procedure... (%default-profile-hooks): ... and register it as a profile hook. * guix/status.scm (hook-message): Register it here too. Maxim Cournoyer
2021-11-11build: glib-or-gtk: Generate the gdk-pixbuf-loaders cache file in a phase....Adding a profile hook to do so covers most use cases, but it is still necessary to have the gdk-pixbuf loaders cache file computed at build time, as software may expect to find loaders support at that time. * guix/build/glib-or-gtk-build-system.scm: Delete trailing #t. (%gdk-pixbuf-loaders-cache-file-prefix): New variable. (generate-gdk-pixbuf-loaders-cache): New procedure. (generate-gdk-pixbuf-loaders-cache-file): Add procedure... (%standard-phases): ... and register it as a build phase. Maxim Cournoyer
2021-11-11build: glib-or-gtk-build-system: Fix indentation....* guix/build/glib-or-gtk-build-system.scm (gtk-module-directories) (wrap-all-programs): Fix indentation. Maxim Cournoyer
2021-11-11build: glib-or-gtk-build-system: Simplify the wrap-all-programs phase....* guix/build/glib-or-gtk-build-system.scm (wrap-all-programs) <handle-output>: Precisely build the list of variable specifications, rather than relying on a bunch of conditionals. Maxim Cournoyer
2021-11-11guix: packages: Fix repacking of plain tarballs....Fixes <https://issues.guix.gnu.org/50066>. * guix/packages.scm (patch-and-repack): Test for a tarball using tarball? and move the plain file copy to the else clause. Reported-by: Mathieu Othacehe <othacehe@gnu.org> Maxim Cournoyer
2021-11-11build: qt-utils: Don't wrap .X-real files....* guix/build/qt-utils.scm (find-files-to-wrap): Exclude already wrapped programs. This is forbidden in wrap-program now due to a738a663a99. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Brendan Tildesley
2021-11-11import: print: Replace packages and origins in 'arguments'....* guix/import/print.scm (package->code)[variable-reference] [object->code]: New procedures. [package-lists->code]: Rewrite in terms of 'object->code'. Pass the 'arguments' field through 'object->code'. * tests/print.scm (pkg-with-arguments, pkg-with-arguments-source): New variables. ("package with arguments"): New test. Ludovic Courtès
2021-11-11import: print: Handle patches that are origins....* guix/import/print.scm (package->code)[source->code]: Handle patches that are origins. * tests/print.scm (pkg-with-origin-input): Add 'patches' field. (pkg-with-origin-patch, pkg-with-origin-patch-source): New variables. ("package with origin patch"): New test. Ludovic Courtès
2021-11-11import: print: Correctly handle URI lists....* guix/import/print.scm (package->code)[factorized-uri-code]: New procedure. [source->code]: Use it, and factorize URI when it's a list. * tests/print.scm (pkg-with-origin-input): Check origin URI to a list. Ludovic Courtès
2021-11-11import: print: Properly render packages with origins as inputs....* guix/import/print.scm (package->code)[source->code]: Check whether VERSION is true before calling 'factorize-uri'. [package-lists->code]: Add clause for inputs that are origins. * tests/print.scm (pkg-with-origin-input, pkg-with-origin-input-source): New variables. ("package with origin input"): New test. Ludovic Courtès
2021-11-11import: cran: Allow imports of a specific version....* guix/import/cran.scm (download): Handle the case where URL is a list. (fetch-description-from-tarball): New procedure. (fetch-description): Add #:version parameter. Honor it when REPOSITORY is 'cran. Use 'fetch-description-from-tarball' when REPOSITORY is 'bioconductor. (description->package): SOURCE-URL may now be a list. (cran->guix-package): Pass VERSION to 'fetch-description'. (cran-recursive-import): Add #:version parameter. * guix/scripts/import/cran.scm (guix-import-cran): Expect a spec rather than a mere package name. * doc/guix.texi (Invoking guix import): Document it. Ludovic Courtès
2021-11-11import: pypi: Allow imports of a specific version....* guix/import/pypi.scm (latest-version): New procedure. (latest-source-release): Rename to... (source-release): ... this. Add 'version' parameter. (latest-wheel-release): Rename to... (wheel-release): ... this. Add 'version' parameter. (pypi->guix-package): Honor 'version' parameter. (pypi-recursive-import): Add 'version' parameter and honor it. * guix/scripts/import/pypi.scm (guix-import-pypi): Expect a spec. Pass it to 'package-name->name+version'. Pass the 'version' parameter. * tests/pypi.scm ("pypi->guix-package, no wheel"): Exercise the #:version parameter. * doc/guix.texi (Invoking guix import): Document it. Ludovic Courtès
2021-11-10store: 'mapm/accumulate-builds' does not compare stores with 'eq?'....Fixes <https://issues.guix.gnu.org/51732>. Regression introduced in 2015d3f042870860efef10e801b93eacc0742d38. The (eq? store expected-store) comparison doesn't work on this branch where the functional cache, with 'cache-object-mapping', is used extensively, thereby changing the store's object identity. * guix/store.scm (build-accumulator): Compare the socket of STORE and EXPECTED-STORE rather than the store themselves. Ludovic Courtès
2021-11-08Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-07guix: Upgrade to Bioconductor 3.14....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same. Ricardo Wurmus
2021-11-07shell: Actually clean up the profile cache....Previously, most actions would leave the cache as-is because 'guix-environment*' would indirectly call 'exit', and thus its continuation was never reached. * guix/scripts/shell.scm (guix-shell): Move call to 'maybe-remove-expired-cache-entries' to EXIT-HOOK. Ludovic Courtès
2021-11-07import: egg: Allow imports of a specific version....* guix/import/egg.scm (eggs-repository): Change URL. (egg-metadata): Accept optional #:version keyword argument. (egg->guix-package): Accept ‘version’ argument. (egg-recursive-import): Add ‘version’ argument and honor it. * guix/scripts/import/egg.scm (guix-import-egg): Parse a specification instead of just a package name. * doc/guix.texi (Invoking guix import): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-11-07home: services: bash: Add ‘aliases’ field....* doc/guix.texi (Shells Home Services): Document it. * gnu/home/services/shells.scm (bash-serialize-aliases): New procedure. (home-bash-configuration, home-bash-extension): Add ‘aliases’ field. (home-bash-extensions): Adjust accordingly. * guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate the ‘alias’ field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-11-07ui: 'load*' correctly reports 'read-error' in all cases....Previously, 'read-error' exceptions other than "missing closing paren" would not be reported; instead, we'd directly call (exit 1) without printing anything. Fixes <https://issues.guix.gnu.org/51463>. Reported by Alice BRENON <alice.brenon@ens-lyon.fr>. * guix/ui.scm (report-load-error): Report the error without re-throwing upon 'read-error'. * tests/guix-build.sh: Add test. Ludovic Courtès
2021-11-07utils: Define a target-x86-32? and target-x86-64? predicate....* guix/utils.scm (target-x86-32?, target-x86-64?): New predicates. * tests/utils.scm ("target-x86-32?", "target-x86-64?"): New tests. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2021-11-06environment: Suggest command upon 'execlp' failure....* guix/scripts/environment.scm (launch-environment): Call 'primitive-_exit' upon 'system-error. (suggest-command-name, validate-exit-status): New procedures. (launch-environment/fork): Call 'validate-exit-status'. (launch-environment/container)[exit/status*]: New procedure. Use it instead of 'exit/status'. Ludovic Courtès
2021-11-06profiles: Build the man database only if 'man-db' is in the profile....This allows us to skip the expensive man-db profile hook in most cases. Suggested by Liliana Marie Prikler <liliana.prikler@gmail.com>. * guix/profiles.scm (manual-database/optional): New procedure. (%default-profile-hooks): Use it instead of 'manual-database'. * doc/guix.texi (Documentation): Add footnote about 'man -k' database creation. Ludovic Courtès
2021-11-06import: elpa: Work around Guile 3.0.[5-7] compiler bug....Fixes <https://issues.guix.gnu.org/49006>. Reported by Xinglu Chen <public@yoctocell.xyz>. * guix/import/elpa.scm (elpa-package->sexp)[melpa-recipe]: Add call to 'identity'. Ludovic Courtès
2021-11-03Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-02import: stackage: Update to release 18.14....* guix/import/stackage.scm (%default-lts-version): Update to 18.14. Lars-Dominik Braun
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-31ui: Use DISPLAY in SHOW-GUIX-HELP....* guix/ui.scm (show-guix-help): Use DISPLAY where FORMAT isn't needed. Tobias Geerinckx-Rice
2021-10-31ui: Add top-level options to help text....This also makes automated ‘guix --h<Tab>’ completion possible. * guix/ui.scm (show-guix-help): Document that an OPTION's an option, and all valid options. Tobias Geerinckx-Rice
2021-10-31home: import: Avoid duplication of 'manifest->code'....* guix/scripts/home/import.scm (manifest->code): Remove. (manifest+configuration-files->code): New procedure. (import-manifest): Use 'manifest+configuration-files->code' instead of 'manifest->code'. * tests/home-import.scm (eval-test-with-home-environment): Likewise. (match-home-environment-transformations): New procedure. ("manifest->code: No services, package transformations"): New test. Ludovic Courtès
2021-10-31home: import: Factorize triplicated 'version-spec' procedure....* guix/scripts/package.scm (manifest-entry-version-prefix): New procedure, moved from... (export-manifest)[version-spec]: ... here. Adjust caller. * tests/home-import.scm (version-spec): Remove. (eval-test-with-home-environment): Use 'manifest-entry-version-prefix' instead. * guix/scripts/home/import.scm (import-manifest): Likewise. Ludovic Courtès
2021-10-31home: import: Clarify "destination directory"....Suggested by Liliana Marie Prikler <liliana.prikler@gmail.com>. * guix/scripts/home/import.scm (configurations+modules): Rename 'destination-directory' to 'configuration-directory'. Improve docstring. Ludovic Courtès
2021-10-31home: import: Compare procedures with 'eq?'....'procedure-name' is a debugging aid and cannot be reliably used to check for procedure equality. * guix/scripts/home/import.scm (configurations+modules): Remove use of 'procedure-name'. Ludovic Courtès
2021-10-31guix home: import: Call ‘local-file’ with ‘name’...Set the name of the file to just the basename of the file passed to ‘local-file’. * guix/scripts/home/import.scm (basename+remove-dots): New procedure. (generate-bash-configuration+modules): Use it. * tests/home-import.scm (match-home-environment-bash-service): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31Add tests for ‘guix home import’....* tests/home-import.scm: New file. * Makefile.am (SCM_TESTS): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31guix home: import: Delete duplicate modules when importing....Two different services might require the same module(s), so delete duplicates when generating the ‘use-modules’ form. * import.scm (manifest->code): Delete duplicate modules. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31guix home: import: Don’t use 'slurp-file-gexp'....‘slurp-file-gexp’ is not a bound procedure. * guix/scripts/home/import.scm (generate-bash-configuration+modules): Don’t use ‘slurp-file-gexp’. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31guix home: import: Fix module name for Bash service....* guix/scripts/home/import.scm (generate-bash-configuration+modules): Change (gnu home-services bash) to (gnu home-services shells); add (guix gexp). Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31guix home: import: Allow multiple modules to be imported for each service....Previously, only one module could be imported for each service, e.g., only (gnu home-services shell) could be imported when generating the Bash service declaration. However, for some services, multiple modules might need to be imported in order for it to work. * guix/scripts/home/import.scm (generate-bash-module+configuration): Rename to ... (generate-bash-configuration+modules): ... this. (%files-configurations-alist): Rename to ... (%files+configurations-alist): ... this. (modules+configurations): Rename to ... (configurations+modules): ... this. (manifest->code): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-31guix home: import: Make the user to specify a destination directory....Copy the appropriate the relevant configuration files to the destination directory, and call ‘local-file’ on them. Without this, ‘guix home import’ will generate a service declaration like this (service home-bash-service-type (home-bash-configuration (bashrc (list (slurp-file-gexp (local-file "/home/yoctocell/.bashrc")))))) but when running ‘guix home reconfigure’, the ~/.bashrc file would be moved, so when running ‘guix home reconfigure’ for the second time, it would read the ~/.bashrc which is itself a symlink to a file the store. * guix/scripts/home/import.scm (generate-bash-module+configuration): Take ‘destination-directory’ parameter (modules+configurations): Copy the user’s configuration file to ‘%destination-directory’. * guix/scripts/home.scm (process-command): Adjust accordingly; create ‘destination’ if it doesn’t exist. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-10-30shell: Error out when an unauthorized guix.scm/manifest.scm is found....The previous behavior was confusing: a warning would be printed and 'guix shell' would go on starting an empty environment. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * guix/scripts/shell.scm (auto-detect-manifest): Change "not loading" case from warning to error. * tests/guix-shell.sh: Adjust accordingly. Ludovic Courtès
2021-10-28packages: Optionally validate Texinfo markup at expansion time....* guix/packages.scm (validate-texinfo): New macro. (<package>)[synopsis, description]: Add 'sanitize' property. Ludovic Courtès
2021-10-28ui: Gracefully handle invalid Texinfo markup in package blurbs....Previously 'guix search' & co. would crash when encountering invalid Texinfo. * guix/ui.scm (texi->plain-text*): New procedure. (package-field-string, package->recutils): Use it. Ludovic Courtès
2021-10-28store: 'map/accumulate-builds' handler checks the store received....This is a followup to b19250eec6f92308f237a09a43e8e3e2355345b9, providing a proper fix for <https://issues.guix.gnu.org/46756>. * guix/remote.scm (remote-eval): Revert b19250eec6f92308f237a09a43e8e3e2355345b9. * guix/store.scm (build-accumulator): Turn into a procedure. Call CONTINUE when the store is not eq? to the initial store. (map/accumulate-builds): Adjust accordingly. * tests/store.scm ("map/accumulate-builds and different store"): New test. Ludovic Courtès