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Add a new phase validating the usability of installed Python packages.
* gnu/packages/aux-files/python/sanity-check.py: New file.
* Makefile.am (AUX_FILES): Register it.
* guix/build-system/python.scm (sanity-check.py): New variable.
(lower): Add the script as an implicit input.
* guix/build/python-build-system.scm: Remove trailing #t.
(sanity-check): New phase.
(%standard-phases): Use it.
* tests/builders.scm: (make-python-dummy)
(dummy-ok, dummy-dummy-nosetuptools, dummy-fail-requirements)
(dummy-fail-import, dummy-fail-console-script): New variables.
("python-build-system: dummy-ok")
("python-build-system: dummy-dummy-nosetuptools")
("python-build-system: dummy-fail-requirements")
("python-build-system: dummy-fail-import")
("python-build-system: dummy-fail-console-script"): Add tests.
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* guix/build/python-build-system.scm (wrap): Adjust to use the new
GUIX_PYTHONPATH. Remove trailing #t.
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This also to reduce the need for boilerplate code found in check phase
overrides.
* guix/build/python-build-system.scm (add-install-to-path): New phase.
(%standard-phases): Order it before the check phase.
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This is to remove the need for common boilerplate code in check phase
overrides.
* guix/build/python-build-system.scm
(add-installed-pythonpath): Streamline. This phase depends on the presence of
a "python" input; thus GUIX_PYTHONPATH is guaranteed to be defined. Update doc.
(add-install-to-pythonpath): New phase.
(%standard-phases): Order it before the check phase.
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* guix/build/python-build-system.scm (add-installed-pythonpath): Replace
"PYTHONPATH" by "GUIX_PYTHONPATH".
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Using PYTHONPATH as a mean to discover the Python packages had the following
issues:
1. It is not versioned, so different versions of Python would clash if
installed in a shared profile.
2. It would interfere with the host Python site on foreign
distributions, sometimes preventing a a user to login their GDM
session (!).
3. It would take precedence over user installed Python packages
installed through pip.
4. It would leak into Python virtualenvs, which are supposed to create
isolated Python environments.
This changes fixes the above issues by making use of a sitecustomize.py
module. The newly introduced GUIX_PYTHONPATH environment variable is read
from the environment, filtered for the current Python version of the
interpreter, and spliced in 'sys.path' just before Python's own site location,
which provides the expected behavior.
* gnu/packages/aux-files/python/sitecustomize.py: New file.
* Makefile.am: Register it.
* gnu/packages/python.scm (customize-site)
(guix-pythonpath-search-path): New procedures.
(python-2.7)[phases]{install-sitecustomize.py}: New phase.
[native-inputs]{sitecustomize.py}: New input.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
(python-3.9)[native-search-paths]: Likewise.
[phases]{install-sitecustomize}: Override with correct version.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
* gnu/packages/commencement.scm (python-boot0):
[phases]{install-sitecustomize}: Likewise.
[native-inputs]{sitecustomize.py}: New input.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
* guix/build/python-build-system.scm (site-packages): Do not add a trailing
'/'.
squash! gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.
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Attempting to compose multiple TeX Live trees (such as can happen when using a
texlive-union generated package) proved problematic; only the texmf.cnf
configuration file from the union would be honored, causing other TeX Live
components to be ignored.
This change does away with TeX Live unions, instead relying on the default
texmf.cnf configuration file provided by the texlive-bin package to honor
individual TeX Live trees referred to via the newly introduced GUIX_TEXMF
variable, and replacing the texlive-union procedure by texlive-updmap.cfg, to
explicit that generating the fonts map configuration is now its sole purpose.
* gnu/packages/tex.scm (texlive-bin)[phases]{customize-texmf}: New phase.
{postint}: Move the patching of the texmf.cnf file to the new above phase.
Patch the updmap.pl script to find its Perl modules.
[native-search-paths]: Rename the TEXMF variable to GUIX_TEXMF. Remove the
TEXMFCNF variable.
* guix/profiles.scm (texlive-configuration): Remove procedure.
(%default-profile-hooks)[texlive-configuration]: Unregister hook.
(texlive-union): Alias to what has moved to...
(texlivke-updmap.cfg): ... here. Update doc. Do not provide a different
texmf.cnf configuration.
[inherit]: Do not inherit from texlive-base.
[build-system]: Switch to the copy-build-system.
[arguments]{install-plan}: New argument.
[phases]{regenerate-updmap.cfg}: New phase, which keeps only the fonts map
generating code from the previous builder code.
[inputs]: Remove bash, and move to ...
[propagated-inputs]: ... here.
[native-inputs]: Remove field, and move the source of the base updmap.cfg file
to...
[source]: ... here.
[synopsis]: Update.
[description]: Likewise.
[license]: Delete duplicates.
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Before this change, only plain directories, tar or zip archives were supported
as the source of a package for the GNU build system; anything else would cause
the unpack phase to fail. Origins relying on snippets would suffer from the
same problem.
This change adds the support to use files of the following extensions: .gz,
.Z, .bz2, .lz, and .xz, even when they are not tarballs. Files of unknown
extensions are treated as uncompressed files and supported as well.
* guix/packages.scm (patch-and-repack): Only add the compressor utility to the
PATH when the file is compressed. Bind more inputs in the mlet, and use them
for decompressing single files. Adjust the decompression and compression
routines.
[decompression-type]: Remove nested variable.
* guix/build/utils.scm (compressor, tarball?): New procedures. Move
%xz-parallel-args to the new 'compression helpers' section.
* tests/packages.scm: Add tests. Add missing copyright year for Jan.
* guix/build/gnu-build-system.scm (first-subdirectory): Return #f when no
sub-directory was found.
(unpack): Support more file types, including uncompressed plain files.
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On the daemon side, nixStore gets set to the environment variable
NIX_STORE_DIR, else the environment variable NIX_STORE else the compile time
macro NIX_STORE_DIR (see the Settings::processEnvironment method in
nix/libstore/globals.cc). When creating a build environment, it sets
NIX_STORE with the value computed as described above. Hence, it's safer to
look for both NIX_STORE_DIR and NIX_STORE in (guix build utils), so that it
works in any context (build context or external context).
* guix/build/utils.scm (%store-directory): Consider both NIX_STORE_DIR and
NIX_STORE as environment variables.
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Previously, 'patch-and-repack' would always create a tar.xz archive as a
result, even if the input was a directory (a checkout). This change
reduces gratuitous CPU and storage overhead.
* guix/packages.scm (patch-and-repack)[tarxz-name]: Remove 'checkout?' case.
[build](repack): New procedure, with "tar" invocation formerly at the
top level.
If SOURCE is a directory, call 'copy-recursively'; otherwise, call
'repack'.
Change NAME to ORIGINAL-FILE-NAME when it matches 'checkout?'.
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This is a followup to 04baa011e9122205009d6d5f15b8162bf6f3fb8a.
* guix/build/gnu-build-system.scm (gnu-build): Really ignore the return
value of PROC. Wrap PROC call in 'with-throw-handler'. Add
'end-of-phase' procedure and use it.
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This is the case for macros (formats), for which the TeX Directory Structure
specifies to be located at the root of the source tree directly.
* guix/build-system/texlive.scm (texlive-ref): Make the ID parameter
optional. Update doc.
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Conflicts:
gnu/local.mk
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/gl.scm
gnu/packages/glib.scm
gnu/packages/guile.scm
gnu/packages/node.scm
gnu/packages/openldap.scm
gnu/packages/package-management.scm
gnu/packages/python-xyz.scm
gnu/packages/python.scm
gnu/packages/tls.scm
gnu/packages/vpn.scm
gnu/packages/xorg.scm
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Before this change, compiling the module would emit the following message:
"guix/packages.scm:213:25: warning: macro `base32' used before definition".
* guix/packages.scm (define-compile-time-decoder)
(base32, base64): Move definitions to the top of the module.
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This follows the fix to <https://bugs.gnu.org/30116>.
* guix/build/emacs-build-system.scm (patch-el-files)
[file-contains-nul-char]: Remove nested procedure.
[el-file]: Do no filter out files containing NUL characters.
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Fixes <https://issues.guix.gnu.org/30116>.
Before this change, the presence of a NUL character on a line meant that
the (glibc) regexp engine used by Guile would either 1. stop scanning the
string or 2. crash with the error "string contains #\\nul character",
depending on the locale used.
This change works around this limitation by first replacing the NUL character
by an unused Unicode code point, doing the substitution, then reverting the
replacement.
* guix/build/utils.scm (unused-private-use-code-point)
(replace-char): New procedures.
(substitute): Make use of the above procedures to work around the NUL
character regexp engine limitation.
* tests/build-utils.scm: Add tests.
Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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Fixes <https://bugs.gnu.org/45709>.
This is a follow-up to commit cf289d7cfa34315bf13b3114b9a5bf3d3c05ebea.
* guix/ui.scm (run-guix-command): Match for #false first.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* guix/upstream.scm (lookup-updater, package-latest-release)
(package-latest-release*, package-update): Make 'updaters' an optional
parameter.
* guix/lint.scm (check-for-updates): Remove second argument to
'package-latest-release*'.
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Fixes a crash with:
guix refresh emacs-exwm-no-x-toolkit
* guix/import/elpa.scm (latest-release): Return #f when
'elpa-package-info' returns #f.
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* guix/scripts.scm (%command-categories): Add extension category.
* guix/ui.scm (source-file-command): Also parse extensions files.
(command-files): Accept an optional directory argument.
(extension-directories): New procedure.
(commands): Use it.
(show-guix-help): Hide empty categories.
(run-guix-command): Try loading an extension if there is no matching Guix
command.
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Until now, 'guix graph --backend=d3js' wouldn't work outside the build
tree.
* d3.v3.js: Move to...
* guix/d3.v3.js: ... here.
* graph.js: Move to...
* guix/graph.js: ... here.
* Makefile.am (nobase_dist_guilemodule_DATA): Add them.
(EXTRA_DIST): Remove them.
* guix/graph.scm (emit-d3js-prologue, emit-d3js-epilogue): Adjust
'search-path' argument accordingly.
* guix/self.scm (compiled-guix)[*extra-modules*]: Pass them via #:extra-files.
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* guix/ui.scm (show-version-and-exit): Change year to 2021.
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* guix/scripts/system.scm (lookup-backend): New procedure.
(export-extension-graph, export-shepherd-graph): Add #:backend parameter
and honor it.
(show-help, %options): Add "--graph-backend".
(%default-options): Add 'graph-backend'.
(process-action): Pass #:backend to 'export-extension-graph' and
'export-shepherd-graph'.
* doc/guix.texi (Invoking guix system): Document '--graph-backend'.
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* guix/scripts/environment.scm: Do not use (ice-9 format) and (ice-9
rdelim).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Reported by Christopher Baines <mail@cbaines.net>
at <https://issues.guix.gnu.org/45323#2>.
* guix/scripts/substitute.scm (call-with-cached-connection): Handle
'gnutls-error and ERROR/INVALID-SESSION.
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* guix/scripts/hash.scm (guix-hash): When 'recursive? is true, use
'open-hash-port' instead of 'open-sha256-port'.
* tests/guix-hash.sh: Add test for 'guix hash -r -H sha512'.
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* guix/import/utils.scm (recursive-import): Fix typo.
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* guix/import/elpa.scm (elpa->guix-package): Raise condition instead of
returning #FALSE.
* guix/scripts/import/elpa.scm (guix-import-elpa): Handle conditions when
importing recursively.
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* guix/build/cargo-build-system(install):
Add argument "--no-track" in "cargo install".
Remove stale hack.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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Otherwise man and info readers are not able to read their content as they rely
on the file extension to detect if compression is used.
* guix/build/gnu-build-system.scm (compress-documentation)
[retarget-symlink]: Append the compressor file extension to the link file name.
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* guix/utils.scm (pkg-config-for-target): New procedure.
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Suggested by Philippe Swartvagher <philippe.swartvagher@inria.fr>.
* guix/transformations.scm (transform-package-patches): New procedure.
(%transformations): Add it as 'with-patch'.
(%transformation-options, show-transformation-options-help/detailed):
Add '--with-patch'.
* tests/transformations.scm ("options->transformation, with-patch"): New
test.
* doc/guix.texi (Package Transformation Options): Document it.
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Fixes <https://bugs.gnu.org/45453>.
* guix/import/utils.scm (alist->package): Find plain license names in (guix
licenses) first, and only fall back to SPDX names on error.
* tests/import-utils.scm ("alist->package with SPDX license name 1/2",
"alist->package with SPDX license name 2/2"): New tests.
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* guix/import/print.scm (package->code)<license->code>: Branch on VAR, not on
the SYMBOL-APPEND return value.
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This is a follow-up to commit 9cfc93be30c516fd6fa32915c61c06e03f23a011.
* guix/build-system/gnu.scm (gnu-build, gnu-cross-build): Quote the list of
default bootstrap scripts.
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This simplifies setup of build machines: no need to install Guile in
addition to Guix, no need to set 'GUILE_LOAD_PATH' & co., leading to
fewer failure modes.
* guix/ssh.scm (remote-run): New procedure.
(remote-daemon-channel): Use it instead of 'open-remote-pipe*'.
(store-import-channel)[import]: Remove check for module availability.
Add call to 'primitive-exit'.
Use 'remote-run' instead of 'open-remote-pipe'.
(store-export-channel)[export]: Remove check for module availability.
Add calls to 'primitive-exit'.
Use 'remote-run' instead of 'open-remote-pipe'.
(handle-import/export-channel-error): Remove 'module-error' clause.
(report-module-error): Remove.
* guix/scripts/offload.scm (assert-node-has-guix): Replace call to
'report-module-error' by 'leave'.
* doc/guix.texi (Daemon Offload Setup): Remove mention of Guile.
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This significantly speeds up things like substituting the closure of a
.drv. This is a followup to 5ff521452b9ec2aae9ed8e4bb7bdc250a581f203.
* guix/scripts/substitute.scm (http-multiple-get): Add #:open-connection
and #:keep-alive? and honor them.
(open-connection-for-uri/maybe): Use 'open-connection-for-uri/cached'
instead of 'guix:open-connection-for-uri'. Call 'http-multiple-get'
within 'call-with-cached-connection'.
(open-connection-for-uri/cached): Add #:timeout and #:verify-certificate?
and honor them.
(call-with-cached-connection): Add 'open-connection' parameter and
honor it.
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* guix/build-system/gnu.scm (gnu-build, gnu-cross-build): Accept
bootstrap-scripts keyword argument and pass it to gnu-build.
(%bootstrap-scripts): New variable.
* guix/build/gnu-build-system.scm (%bootstrap-scripts): Remove variable.
(bootstrap): Remove default value for bootstrap-scripts argument.
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* guix/import/crate.scm (%crate-updater): Change name to `crate', so it is on
par with the importer, and the manual.
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Fixes <https://issues.guix.gnu.org/45351>.
* guix/scripts/import/crate.scm (show-help): Fix URL.
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* guix/import/cran.scm (%input-style): New parameter.
(format-inputs): Use it.
* guix/scripts/import/cran.scm (guix-import-cran): Set the %input-style
parameter.
(%options): Add "--style" option.
* doc/guix.texi (Invoking guix import): Document it.
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* gnu/bootloader/grub.scm (grub-configuration-file): New parameter
store-crypto-devices.
[crypto-devices]: New helper function.
[builder]: Use crypto-devices.
* gnu/machine/ssh.scm (roll-back-managed-host): Use
boot-parameters-store-crypto-devices to provide its contents to the
bootloader configuration generation process.
* gnu/tests/install.scm (%encrypted-root-not-boot-os,
%encrypted-root-not-boot-os): New os declaration.
(%encrypted-root-not-boot-installation-script): New script, whose contents
were initially taken from %encrypted-root-installation-script.
(%test-encrypted-root-not-boot-os): New test.
* gnu/system.scm (define-module): Export
operating-system-bootoader-crypto-devices and
boot-parameters-store-crypto-devices.
(<boot-parameters>): Add field store-crypto-devices.
(read-boot-parameters): Parse store-crypto-devices field.
[uuid-sexp->uuid]: New helper function extracted from
device-sexp->device.
(operating-system-bootloader-crypto-devices): New function.
(operating-system-bootcfg): Use
operating-system-bootloader-crypto-devices to provide its contents to
the bootloader configuration generation process.
(operating-system-boot-parameters): Add store-crypto-devices to the
generated boot-parameters.
(operating-system-boot-parameters-file): Likewise to the file with
the serialized structure.
* guix/scripts/system.scm (reinstall-bootloader): Use
boot-parameters-store-crypto-devices to provide its contents to the
bootloader configuration generation process.
* tests/boot-parameters.scm (%default-store-crypto-devices): New
variable.
(%grub-boot-parameters, test-read-boot-parameters): Use
%default-store-crypto-devices.
(tests store-crypto-devices): New tests.
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Partially fixes <https://issues.guix.gnu.org/45302>.
* guix/scripts/discover.scm (guix-discover): Remove previous cache files.
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Fixes <https://issues.guix.gnu.org/45314>.
* guix/avahi.scm (avahi-browse-service-thread): Change timeout default value
to false when no "stop-loop?" procedure is passed. Adapt "iterate-simple-poll"
call accordingly.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* configure.ac: For Guile 2.2, require 2.2.6 or later.
* guix/gexp.scm (define-syntax-parameter-once): Remove.
Use 'define-syntax-parameter' instead.
* guix/mnoads.scm: Likewise.
* guix/inferior.scm (proxy)[select*]: Remove.
* guix/scripts/publish.scm <top level>: Remove replacement for (@@ (web
http) read-header-line).
* guix/store/deduplication.scm (counting-wrapper-port): Remove.
(nar-sha256): Call 'port-position' on PORT to compute SIZE.
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This removes the main source of latency between subsequent downloads.
* nix/libstore/build.cc (SubstitutionGoal::tryToRun): Add a
"deduplicate" key to ENV.
(SubstitutionGoal::finished): Remove call to 'optimisePath'.
* guix/scripts/substitute.scm (process-substitution)[destination-in-store?]
[dump-file/deduplicate*]: New variables.
Pass #:dump-file to 'restore-file'.
* guix/scripts/substitute.scm (guix-substitute)[deduplicate?]: New
variable.
Pass #:deduplicate? to 'process-substitution'.
* guix/serialization.scm (dump-file): Export and augment 'dump-file'.
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This way, the hash of the store item can be computed as it is restored,
thereby avoiding an additional file tree traversal ('hashPath' call)
later on in the daemon. Consequently, it should reduce latency between
subsequent substitute downloads.
This is a followup to 5ff521452b9ec2aae9ed8e4bb7bdc250a581f203.
* guix/scripts/substitute.scm (narinfo-hash-algorithm+value): New
procedure.
(process-substitution): Wrap INPUT into a hash input port, 'hashed', and
read from it. Compare the actual and expected hashes, and print a
"hash-mismatch" status line when they differ. When they match, print
not just "success" but also the nar hash and size.
* nix/libstore/build.cc (class SubstitutionGoal)[expectedHashStr]:
Remove.
(SubstitutionGoal::finished): Tokenize 'status'. Parse it and handle
"success" and "hash-mismatch" accordingly. Call 'hashPath' only when
the returned hash is not SHA256.
(SubstitutionGoal::handleChildOutput): Remove 'expectedHashStr'
handling.
* tests/substitute.scm ("substitute, invalid hash"): Rename to...
("substitute, invalid narinfo hash"): ... this.
("substitute, invalid hash"): New test.
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Fixes <https://bugs.gnu.org/44985>.
Reported by Simon Josefsson <simon@josefsson.org>.
* guix/progress.scm (display-download-progress): Add #:tty? and honor it.
* guix/status.scm (print-build-event): Pass #:tty? to
'display-download-progress'.
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* guix/import/elpa.scm (default-files-spec): New variable.
(download-git-repository, package-name->melpa-recipe, file-hash, vcs-file?,
git-repository->origin, melpa-recipe->origin, melpa-recipe->maybe-arguments):
New procedures.
(elpa-package->sexp): Add optional repo argument, and use it to determine
whether to attempt to construct a source using the MELPA recipe.
(elpa->guix-package): Pass repo to elpa-package->sexp.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* guix/import/cran.scm (%cran-canonical-url): New variable.
(description->package): Construct home-page using canonical URL.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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