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2021-06-05guix: Update to Bioconductor 3.13.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Update version. * guix/import/cran.scm (%bioconductor-version): Update.
2021-06-03licenses: Add BSD-1-Clause license.Xinglu Chen
* licenses.scm (bsd-1): New variable.
2021-06-03import: Add CHICKEN egg importer.Xinglu Chen
* guix/import/egg.scm: New file. * guix/scripts/import/egg.scm: New file. * tests/egg.scm: New file. * Makefile.am (MODULES, SCM_TESTS): Register them. * po/guix/POTFILES.in: Likewise. * guix/scripts/import.scm (importers): Add egg importer. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-03gnu-maintenance: 'generic-html' computes the right source URL.Ludovic Courtès
Fixes a regression introduced in 84f8bae0f85de081bbc55aa54ad6a50981a06a43, whereby the URL computed for the new ffmpeg (for instance) would be: https://ffmpeg.org/ffmpeg-4.4.tar.xz instead of: https://ffmpeg.org/releases/ffmpeg-4.4.tar.xz Reported by Maxim Cournoyer. * guix/gnu-maintenance.scm (latest-html-release)[url->release]: Adjust computation in the case of a URI-reference with a relative path.
2021-06-01ui, lint: Simplify exception handling in Guile 3 style.Ludovic Courtès
* guix/lint.scm (check-derivation)[try]: Remove "catch #t" wrapping. * guix/ui.scm (call-with-error-handling): Remove "catch 'system-error" and move 'system-error handling to the &exception-with-kind-and-args clause.
2021-06-01maint: Require Guile 3.0.Ludovic Courtès
* configure.ac: Require Guile 3.0. * doc/guix.texi (Requirements): Adjust accordingly. * gnu/packages/package-management.scm (guile2.2-guix): Remove. * guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'. * guix/scripts/deploy.scm (deploy-machine*): Likewise. * guix/store.scm (call-with-store): Likewise. * guix/swh.scm (http-get*, http-post*): Likewise. * guix/ui.scm (without-compiler-optimizations, guard*) (call-with-error-handling): Likewise.
2021-06-01publish: Add keep-alive support when sending nar.Mathieu Othacehe
The default Guile web server implementation supports the keep alive mechanism. However, in our custom http-write implementation, the connection is unconditionally close after sending nar files. To prevent that, when supported, add the client port to the server poll set so that further requests can be handled without closing the connection. * guix/scripts/publish.scm (nar-response-port): Rename it into ... (nar-compressed-port): ... this procedure. Operate directly on a given PORT. (http-write): Add keep-alive support when sending nar files. * guix/scripts/substitute.scm (process-substitution): Pass the download size to the progress-report-port procedure so that it doesn't block reading from the input port when keep-alive is supported.
2021-06-01publish: Preserve the request connection header.Mathieu Othacehe
The Guile web server is reading the response connection header to decide whether to close the connection. However, as the request connection header is not forwarded to the response, this mechanism cannot work. * guix/scripts/publish.scm (add-extra-headers): New procedure. (make-request-handler): Use it to forward the request connection header to the response.
2021-06-01progress: Add a download-size argument to progress-report-port.Mathieu Othacehe
* guix/progress.scm (progress-report-port): Add a download-size argument.
2021-05-28gnu-maintenance: 'generic-html' correctly handles relative release URLs.Ludovic Courtès
* guix/gnu-maintenance.scm (latest-html-release)[url->release]: Fix source URL construction in cases where URL is a possibly relative path.
2021-05-28gnu-maintenance: 'release-file?' accepts 'v' prefix as in "PKG-v1.2.tgz".Ludovic Courtès
* guix/gnu-maintenance.scm (%tarball-rx, %package-name-rx): Accept 'v' and 'V' prefixes. Accept ".tgz" extension. * tests/gnu-maintenance.scm ("release-file?"): Add test.
2021-05-28guix build: Emit "nothing to do" warning only when needed.Ludovic Courtès
This is a followup to 681af1fb78a735b51dc811aed770b2948212c3fc. * guix/scripts/build.scm (guix-build): Emit "nothing to do" warning only when both DRV and ITEMS are null.
2021-05-28guix package: Do not warn about "missing arguments" when there's nothing to do.Ludovic Courtès
In some cases, running "guix upgrade" can trigger this warning, and "missing arguments" is misleading then. Reported by flatwhatson on #guix. * guix/scripts/package.scm (process-actions): Change warning to "nothing to do".
2021-05-28import: opam: Generate license for package.Xinglu Chen
* guix/import/opam.scm (opam->guix-package): Generate license for the ‘license’ field. * tests/opam.scm (test-opam-file): Update accordingly. ("opam->guix-package"): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28git-download: Support submodules in 'git-predicate'.Andrew Whatson
* guix/git-download.scm (git-file-list): Add prefix and recursive? arguments. Recurse into submodules when requested. (git-predicate): Add recursive? argument. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28git-download: 'git-predicate' now ignores deleted files.Ludovic Courtès
When git-predicate is used on an active worktree, some files in the index might not exist on the filesystem. Instead of failing with "No such file or directory", these should be ignored. * guix/git-download.scm (git-predicate): Wrap 'lstat' call in 'false-if-exception'. Return RESULT when STAT is #f. Co-authored-by: Andrew Whatson <whatson@gmail.com>
2021-05-28scripts: Commands warn when passed zero arguments.Ludovic Courtès
This is a followup to 3f8326237df780404c172ef4127195cc20becd66. * guix/scripts/archive.scm (export-from-store): Warn then FILES is empty. * guix/scripts/build.scm (guix-build): Likewise. * guix/scripts/copy.scm (warn-if-empty): New procedure. (send-to-remote-host, retrieve-from-remote-host): Call it. * guix/scripts/edit.scm (guix-edit): Warn when SPECS is empty. * guix/scripts/environment.scm (guix-environment): Warn when MANIFEST has zero entries. * guix/scripts/graph.scm (guix-graph): Warn then ITEMS is empty. * guix/scripts/package.scm (process-actions): Warn when FILES and TRANS are both empty.
2021-05-28deploy: Error out when the FILE argument is missing.Ludovic Courtès
* guix/scripts/deploy.scm (guix-deploy): Error out when FILE is false.
2021-05-26guix: ci: Add spec support to latest-evaluations.Mathieu Othacehe
* guix/ci.scm (latest-evaluations): Add spec parameter support.
2021-05-26guix: ci: Fix evaluation complete? field.Mathieu Othacehe
* guix/ci.scm (<evaluation>): Fix evaluation complete? field.
2021-05-22import: hackage: Prefix licenses with 'license:'.Xinglu Chen
* guix/import/hackage.scm (string->license): Prefix the value of the license field with ‘license:’. * tests/hackage.scm (match-ghc-foo, match-ghc-foo-6, match-ghc-foo-revision): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-22lint: archival: Lookup content in Disarchive database.Ludovic Courtès
* guix/lint.scm (lookup-disarchive-spec): New procedure. (check-archival): When 'lookup-content' returns #f, call 'lookup-disarchive-spec'. Call 'lookup-directory' on the result of 'lookup-directory'. * guix/download.scm (%disarchive-mirrors): Make public. * tests/lint.scm ("archival: missing content"): Set '%disarchive-mirrors'. ("archival: content unavailable but disarchive available"): New test.
2021-05-22scripts: discover: Report Avahi errors.Mathieu Othacehe
Fixes: <https://issues.guix.gnu.org/48561>. * guix/scripts/discover (guix-discover): Report Avahi errors.
2021-05-20guix: Build texlive-configuration only when texlive-base is present.Ricardo Wurmus
Fixes <https://bugs.gnu.org/48519>. * guix/profiles.scm (texlive-configuration): Build only if texlive-base is present in the profile's manifest.
2021-05-20scripts: challenge: Fix regression.Mathieu Othacehe
This is a follow-up of 3cde5231aa78aa5e31b27888cd78ee0b250a7a1c that fixes the challenge test. When dealing with uncompressed NAR, the file size is false. Propagate it to progress-reporter/file as it used to be the case. * guix/scripts/challenge.scm (call-with-nar): Accept false size.
2021-05-17ui: 'load*' compiles with '-O1'.Ludovic Courtès
With this change, the wall-clock time of: guix system build --no-grafts -d gnu/system/install.scm goes from 5.0s to 2.3s on Guile 3.0.5. * guix/ui.scm (without-compiler-optimizations): New macro. (load*): Use it.
2021-05-17ui: Remove Guile 2.2.3 workaround.Ludovic Courtès
This became dead code with commit 4f621a2b003e85d480999e4d0630e9dc3de85bc3. * guix/ui.scm (load*): Remove Guile 2.2.3 workaround.
2021-05-16publish: Add '--negative-ttl'.Ludovic Courtès
* guix/scripts/publish.scm (show-help, %options): Add '--negative-ttl'. (render-narinfo, render-narinfo/cached, make-request-handler): Add #:negative-ttl and honor it. (run-publish-server): Add #:narinfo-negative-ttl and honor it. (guix-publish): Honor '--negative-ttl'. * tests/publish.scm ("negative TTL", "no negative TTL"): New tests.
2021-05-16substitutes: Reduce negative TTLs.Ludovic Courtès
* guix/substitutes.scm (%narinfo-negative-ttl): Change to 15mn. (%narinfo-transient-error-ttl): Halve.
2021-05-15inferior: Support querying package replacements.Christopher Baines
I'm looking at this to help with adding support for looking up package replacements to store in the Guix Data Service. * guix/inferior.scm (inferior-package-replacement): New procedure. * tests/inferior.scm ("inferior-package-replacement"): New test.
2021-05-14swh: 'lookup-origin-revision' ignores partial visits.Ludovic Courtès
* guix/swh.scm (lookup-origin-revision): Filter out visits with a status different from 'full.
2021-05-14self: Add dependency on Disarchive.Ludovic Courtès
This enables the Disarchive fallback implemented in commit fbc2a52a32ddc664db8ebab420c2e17b1432c744 (on foreign distros). * guix/self.scm (specification->package): Add "disarchive". (compiled-guix): Add DISARCHIVE to DEPENDENCIES in the #:dependencies argument to 'guix-command'.
2021-05-14import: go: Fix goproxy option argument's format.Zheng Junjie
Commit a8b927a562 Added new procedure go-module-available-versions use 'string-append' to GOPROXY, but 'string->symbol' let GOPROXY is a symbol (it must be a string), which would lead to wrong-type-arg errors in the 'string-append' procedure. * guix/scripts/import/go.scm (%options)[goproxy]: Remove call to 'string->symbol'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-13challenge: Be defensive in the size passed to the progress reporter.Ludovic Courtès
Possibly fixes <https://bugs.gnu.org/48045>. Reported by Bone Baboon <bone.baboon@disroot.org>. * guix/scripts/challenge.scm (call-with-nar): Rename second value returned by 'http-fetch' to match reality. Change second argument to 'progress-reporter/file'.
2021-05-13self: Build with 'guile-3.0-latest'.Ludovic Courtès
* guix/self.scm (specification->package): Use 'guile-3.0-latest' instead of 'guile-3.0/libgc-7'.
2021-05-12channels: Add a #:system argument to channel-instances->manifest.Christopher Baines
This allows computing a manifest for a specific system. Previously this was possible, but only through changing %current-system, which caused the derivation to be computed using that system as well (so computing a derivation for aarch64-linux on x86_64-linux would require running aarch64-linux code). This new argument adds the possibility of computing derivations for non-native systems, without having to run non-native code. I'm looking at this as it will enable the Guix Data Service to compute channel instance derivations without relying on QEMU emulation for non-native systems (it should be faster as well). * guix/channels.scm (build-from-source): Add #:system argument and pass to build. (build-channel-instance): Add system argument and pass to build-from-source. (channel-instance-derivations): Add #:system argument and pass to build-channel-instance, also rename system to current-system-value. (channel-instances->manifest): Add #:system argument and pass to channel-instance-derivations.
2021-05-11Merge branch 'version-1.3.0'Maxim Cournoyer
2021-05-11ssh: Fix type that broke offloading.Ludovic Courtès
Reported by Simon Streit <simon@netpanic.org>. Regression introduced in 3270308eebe82075d2f02517c5a2b1599928495c. * guix/ssh.scm (remote-daemon-channel)[redirect]: Unquote SOCKET-NAME.
2021-05-10guix: scripts system: Increase the size for generating Docker container images.Roel Janssen
* guix/scripts/system.scm: Override the default of 256.
2021-05-09describe: Gracefully handle profiles that lack provenance info.Ludovic Courtès
Fixes <https://bugs.gnu.org/48313>. Previously, 'current-channels' would return the empty list when 'current-profile' is true but the profile lacks provenance info. * guix/describe.scm (current-channels)[build-time-metadata]: New procedure. Call it when 'manifest-entry-channel' returns #f for all of ENTRIES. * guix/scripts/describe.scm (guix-describe): When PROFILE is true, pass third argument to 'display-profile-info'.
2021-05-09diagnostics, ui: Adjust to 'read-error' and 'syntax-error' in Guile 3.0.6.Ludovic Courtès
* guix/diagnostics.scm (source-properties->location): Add clause for vectors. * guix/ui.scm (report-load-error): Tweak 'read-error' handling for 3.0.6. * tests/guix-package.sh: Relax regexp for the "unbound variable" diagnostic check. * tests/guix-system.sh: Adjust "missing closing paren" check for 3.0.6. * tests/records.scm (location-alist): New procedure. ("define-record-type* & wrong field specifier") ("define-record-type* & wrong field specifier, identifier") ("define-record-type* & duplicate initializers"): Use it.
2021-05-08ssh: Honor GUIX_DAEMON_SOCKET on the target machine.Ludovic Courtès
Fixes <https://bugs.gnu.org/48240>. Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/ssh.scm (remote-daemon-channel)[redirect]: Define 'connect-to-daemon'. Use the same-named procedure from (guix store) when available, and honor GUIX_DAEMON_SOCKET.
2021-05-08store: Export 'connect-to-daemon'.Ludovic Courtès
* guix/store.scm (connect-to-daemon): Make public. Improve docstring.
2021-05-08ssh: 'connect-to-remote-daemon' raises a nicer message upon error.Ludovic Courtès
* guix/ssh.scm (connect-to-remote-daemon): Catch 'store-connection-error?' and rethrow.
2021-05-08store: 'open-connection' never returns #f.Ludovic Courtès
* guix/store.scm (open-connection)[handshake-error]: New procedure. Call it in code paths that would previously return #f.
2021-05-08weather: '--display-missing' shows the system type of missing items.Ludovic Courtès
* guix/scripts/weather.scm (store-item-system): New procedure. (report-server-coverage): Use it to print the system type of each missing item.
2021-05-08build-system: asdf: Work around package-name->name+version bug.Guillaume Le Vaillant
This patch modifies how the name of the main Common Lisp system is extracted from the full Guix package name to work around bug#48225 concerning the 'package-name->name+version' function. Fixes <https://issues.guix.gnu.org/41437>. * guix/build-system/asdf.scm (asdf-build): Fix 'systems' function. * guix/build/asdf-build-system.scm (main-system-name): Fix it.
2021-05-05download: Restore error reporting.Timothy Sample
Normal error reporting was disrupted by the introduction of Disarchive in commit fbc2a52a32ddc664db8ebab420c2e17b1432c744. In particular, running 'guix download' would succeed with a partially downloaded file. * guix/build/download.scm (disarchive-fetch/any): Return '#f' when Disarchive cannot be found, the specification cannot be found, or Disarchive fails due to an error.
2021-05-05swh: Adjust for compatibility with Guile 2.2's (web client).Ludovic Courtès
Guile <= 2.2.7 did not support #:verify-certificate? so work around it. * guix/swh.scm (http-get*, http-post*) [! guile-3]: Add variant for Guile 2.2.
2021-05-05cvs-download: Fix module exportsKonrad Hinsen
* guix/cvs-download.scm: Remove non-existent export cvs-reference-url, add cvs-reference-root-directory and cvs-reference-module Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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