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2021-02-04build/gnu: Only make source checkout files writable.Maxim Cournoyer
This is a followup commit to 6129ebddbd. It was suggested by Ludovic in #guix that it's probably safer to leave files extracted from a tarball alone. While at it, guard against possible exceptions that can happen in the presence of dangling symbolic links, for example. * guix/build/gnu-build-system.scm (unpack): Wrap the make-file-writable call in a false-if-exception handler. Move the for-each loop under the file-is-directory? cond branch.
2021-02-04build/gnu: Ensure the files are writable after the unpack phase.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/43015>. * guix/build/gnu-build-system.scm (unpack): Call 'make-file-writable' on every source file.
2021-02-03build: python: Fix build phases ordering.Maxim Cournoyer
The wrap phase was happening before the installed site location was added to GUIX_PYTHONPATH, causing wrapped commands to not find their own Python libraries. * guix/build/python-build-system.scm (%standard-phases): Explicit the sequential ordering of phases using add-after directives, so that the wrap phase occurs after the add-install-to-pythonpath and add-install-to-path phases.
2021-02-03Merge branch 'master' into core-updatesChristopher Baines
2021-02-02guix: narinfo: Export narinfo-contents.Christopher Baines
As this is useful if you want to work with narinfo signatures outside of Guix, in the Guix Data Service for example. * guix/narinfo.scm: Export narinfo-contents.
2021-02-02import: gnu: Fix the detection of non-GNU packages.Maxim Cournoyer
* guix/import/gnu.scm (gnu->guix-package): Move the 'find-package' call before the 'latest-release' call, which would fail when the package did not have an entry on the FTP server.
2021-02-01gnu: meson-for-build: Remove package.Maxim Cournoyer
The meson-for-build package doesn't carry any special patch anymore; it appears to be obsolete. * gnu/packages/build-tools.scm (meson-for-build): Remove variable. * guix/build-system/meson.scm (default-meson): Use meson. * doc/guix.texi (Build Systems): Update doc.
2021-02-01build/python: Add a sanity check phase.Lars-Dominik Braun
Add a new phase validating the usability of installed Python packages. * gnu/packages/aux-files/python/sanity-check.py: New file. * Makefile.am (AUX_FILES): Register it. * guix/build-system/python.scm (sanity-check.py): New variable. (lower): Add the script as an implicit input. * guix/build/python-build-system.scm: Remove trailing #t. (sanity-check): New phase. (%standard-phases): Use it. * tests/builders.scm: (make-python-dummy) (dummy-ok, dummy-dummy-nosetuptools, dummy-fail-requirements) (dummy-fail-import, dummy-fail-console-script): New variables. ("python-build-system: dummy-ok") ("python-build-system: dummy-dummy-nosetuptools") ("python-build-system: dummy-fail-requirements") ("python-build-system: dummy-fail-import") ("python-build-system: dummy-fail-console-script"): Add tests.
2021-02-01build/python: Adjust wrap phase to use the new GUIX_PYTHONPATH.Maxim Cournoyer
* guix/build/python-build-system.scm (wrap): Adjust to use the new GUIX_PYTHONPATH. Remove trailing #t.
2021-02-01build/python: Add the installation bin directory to PATH.Maxim Cournoyer
This also to reduce the need for boilerplate code found in check phase overrides. * guix/build/python-build-system.scm (add-install-to-path): New phase. (%standard-phases): Order it before the check phase.
2021-02-01build/python: Always add the install prefix to the Guix PYTHONPATH.Maxim Cournoyer
This is to remove the need for common boilerplate code in check phase overrides. * guix/build/python-build-system.scm (add-installed-pythonpath): Streamline. This phase depends on the presence of a "python" input; thus GUIX_PYTHONPATH is guaranteed to be defined. Update doc. (add-install-to-pythonpath): New phase. (%standard-phases): Order it before the check phase.
2021-02-01build/python: Replace PYTHONPATH by GUIX_PYTHONPATH.Maxim Cournoyer
* guix/build/python-build-system.scm (add-installed-pythonpath): Replace "PYTHONPATH" by "GUIX_PYTHONPATH".
2021-02-01gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.Maxim Cournoyer
Using PYTHONPATH as a mean to discover the Python packages had the following issues: 1. It is not versioned, so different versions of Python would clash if installed in a shared profile. 2. It would interfere with the host Python site on foreign distributions, sometimes preventing a a user to login their GDM session (!). 3. It would take precedence over user installed Python packages installed through pip. 4. It would leak into Python virtualenvs, which are supposed to create isolated Python environments. This changes fixes the above issues by making use of a sitecustomize.py module. The newly introduced GUIX_PYTHONPATH environment variable is read from the environment, filtered for the current Python version of the interpreter, and spliced in 'sys.path' just before Python's own site location, which provides the expected behavior. * gnu/packages/aux-files/python/sitecustomize.py: New file. * Makefile.am: Register it. * gnu/packages/python.scm (customize-site) (guix-pythonpath-search-path): New procedures. (python-2.7)[phases]{install-sitecustomize.py}: New phase. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. (python-3.9)[native-search-paths]: Likewise. [phases]{install-sitecustomize}: Override with correct version. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * gnu/packages/commencement.scm (python-boot0): [phases]{install-sitecustomize}: Likewise. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * guix/build/python-build-system.scm (site-packages): Do not add a trailing '/'. squash! gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.
2021-02-01guix package: Add '--export-channels'.Ludovic Courtès
* guix/channels.scm (sexp->channel): Export. * guix/describe.scm: Use (guix channels). (manifest-entry-provenance): New procedure. * guix/scripts/package.scm (channel=?, export-channels): New procedures. (show-help, %options): Add '--export-channels'. (process-query): Honor it. * build-aux/build-self.scm (build-program)[select?]: Exclude (guix channels) to account for the (guix describe) change above. * doc/guix.texi (Invoking guix package): Document it.
2021-02-01channels: Add 'channel->code'.Ludovic Courtès
* guix/channels.scm (channel->code): New procedure, taken from... * guix/scripts/describe.scm (channel->sexp): ... here. Adjust callers accordingly.
2021-02-01guix describe: Use 'manifest-entry-channel'.Ludovic Courtès
* guix/channels.scm (manifest-entry-channel): Export. * guix/scripts/describe.scm (display-profile-content): Use it.
2021-02-01channels: Add the channel name to channel sexps.Ludovic Courtès
* guix/channels.scm (channel-instance->sexp): Add 'name'. (sexp->channel): Extract the name from SEXP, using the optional argument as a fallback.
2021-02-01channels: Factorize 'manifest-entry-channel' and channel serialization.Ludovic Courtès
* guix/channels.scm (sexp->channel, manifest-entry-channel): New procedures. (profile-channels): Replace lambda by 'manifest-entry-channel'. (channel-instance->sexp): New procedure. (channel-instances->manifest)[instance->entry]: Use 'channel-instance->sexp' instead of inline code.
2021-02-01guix package: Add '--export-manifest'.Ludovic Courtès
* guix/scripts/package.scm (export-manifest): New procedure. (show-help, %options): Add '--export-manifest'. (process-query): Honor it. * guix/build/profiles.scm (build-profile): Mention it. * tests/guix-package.sh: Test it. * doc/guix.texi (Invoking guix package): Document it.
2021-02-01utils: Add 'version-unique-prefix'.Ludovic Courtès
* guix/utils.scm (version-unique-prefix): New procedure. * tests/utils.scm ("version-unique-prefix"): New test.
2021-02-01profiles: Add 'manifest->code'.Ludovic Courtès
* guix/profiles.scm (manifest->code): New procedure. * tests/profiles.scm ("manifest->code, simple") ("manifest->code, simple, versions") ("manifest->code, transformations"): New tests.
2021-01-31scripts: import: json: Fix error handling.zimoun
Fixes partially <https://bugs.gnu.org/44115>. * guix/scripts/import/json.scm (guix-import-json): Handle error. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-31import: gnu: Mention package name upon failure.zimoun
* guix/import/gnu.scm (gnu->guix-package): Use 'formatted-message' and mention the package name in error messages. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-31gnu-maintenance: Fix error handling.zimoun
Fixes partially <https://bugs.gnu.org/44115>. * guix/gnu-maintenance.scm (latest-release): Handle 'ftp-error'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-31database: Validate #:nar-size and #:time when registering store items.Ludovic Courtès
* guix/store/database.scm (assert-integer): New procedure. (update-or-insert): Use it to validate NAR-SIZE and TIME. * tests/store-database.scm ("sqlite-register with incorrect size"): New test.
2021-01-31database: Remove workarounds unnecessary with guile-sqlite3 0.1.2.Ludovic Courtès
* guix/store/database.scm (sqlite-exec, sqlite-finalize): Remove.
2021-01-31ci: Add missing imports.Ludovic Courtès
This is a followup to 041a9466ea23d6ae811491bcf529bf9487317b48. * guix/ci.scm: Add missing imports. * guix/channels.scm: Remove (guix ci) import.
2021-01-31guix: channels: Introduce "channel-with-substitutes-available".Mathieu Othacehe
* guix/channels.scm (find-latest-commit-with-substitutes, channel-with-substitutes-available): New procedures. * guix/scripts/pull.scm (guix-pull): Move "channel-list" call inside the %current-system parameter scope. * doc/guix.texi (Channels with substitutes): New section.
2021-01-30guix system: Adjust 'upgrade-shepherd-services' to shepherd service change.Ludovic Courtès
Fixes a regression introduced in 95f72dcd7aece05e9252c93bef5a831f96cb5393. * guix/scripts/system/reconfigure.scm (upgrade-shepherd-services)[target-services]: Add call to 'shepherd-configuration-services'.
2021-01-30services: shepherd: Allow custom 'shepherd' package.Maxime Devos
* gnu/services/shepherd.scm (<shepherd-configuration>): New record. (shepherd-boot-gexp, shepherd-root-service-type): Use it. (scm->go, shepherd-configuration-file): Allow passing custom shepherd package. * gnu/system.scm (operating-system-shepherd-service-names): Use the new record. * guix/scripts/system.scm (export-shepherd-graph): Adjust accordingly. * doc/guix.texi (Shepherd Services). Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-01-30build-system/julia: Don't rely on file name to set module name.nixo
* guix/build/julia-build-system.scm (project.toml->name): New procedure. (precompile, check, julia-build): Accept new key argument #:julia-package-name. * guix/build-system/julia.scm (julia-build): ... add it. * doc/guix.texi (julia-build-system): Update julia-package-name accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-30build-system/julia: Enable tests.nixo
* guix/build-system/julia.scm (julia-build): Set tests? default to #t. * guix/build/julia-build-system.scm (check): Respect tests? and fix julia invocation. (%standard-phases): Add check phase after install. * doc/guix.texi (julia-build-system): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-29gnu: texlive-bin: Enable the use of multiple TeX Live trees.Maxim Cournoyer
Attempting to compose multiple TeX Live trees (such as can happen when using a texlive-union generated package) proved problematic; only the texmf.cnf configuration file from the union would be honored, causing other TeX Live components to be ignored. This change does away with TeX Live unions, instead relying on the default texmf.cnf configuration file provided by the texlive-bin package to honor individual TeX Live trees referred to via the newly introduced GUIX_TEXMF variable, and replacing the texlive-union procedure by texlive-updmap.cfg, to explicit that generating the fonts map configuration is now its sole purpose. * gnu/packages/tex.scm (texlive-bin)[phases]{customize-texmf}: New phase. {postint}: Move the patching of the texmf.cnf file to the new above phase. Patch the updmap.pl script to find its Perl modules. [native-search-paths]: Rename the TEXMF variable to GUIX_TEXMF. Remove the TEXMFCNF variable. * guix/profiles.scm (texlive-configuration): Remove procedure. (%default-profile-hooks)[texlive-configuration]: Unregister hook. (texlive-union): Alias to what has moved to... (texlivke-updmap.cfg): ... here. Update doc. Do not provide a different texmf.cnf configuration. [inherit]: Do not inherit from texlive-base. [build-system]: Switch to the copy-build-system. [arguments]{install-plan}: New argument. [phases]{regenerate-updmap.cfg}: New phase, which keeps only the fonts map generating code from the previous builder code. [inputs]: Remove bash, and move to ... [propagated-inputs]: ... here. [native-inputs]: Remove field, and move the source of the base updmap.cfg file to... [source]: ... here. [synopsis]: Update. [description]: Likewise. [license]: Delete duplicates.
2021-01-29inferior: Speed up 'cached-channel-instance' for cache hits.Ludovic Courtès
That way a command like: guix time-machine --commit=5aeee07cc9 -- describe goes from 3.4s to 0.5s on a cache hit, even slightly less when passing the full commit ID. * guix/inferior.scm (channel-full-commit): New procedure. (cached-channel-instance): Remove 'instances' top-level variable. Add 'commits' and use it for 'key'. Move 'latest-channel-instances' call to the cache miss case.
2021-01-28ui: Look up extensions before built-in commands.zimoun
* guix/ui.scm (run-guix-command): Modify order so that extensions are allowed to override default commands. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-01-28guix: Add Open Software License 2.1.Ricardo Wurmus
* guix/licenses.scm (osl2.1): New variable.
2021-01-28guix: Fix typo.Ricardo Wurmus
* guix/inferior.scm (inferior-available-packages): Remove extra word in docstring.
2021-01-27inferior: Memoize entries in 'inferior-package->manifest-entry'.Ludovic Courtès
Fixes a performance issue as reported by Ricardo Wurmus in <https://bugs.gnu.org/46100>. * guix/inferior.scm (inferior-package->manifest-entry): Remove #:parent parameter. [cache]: New variable. [memoized]: New macro. [loop]: New procedure.
2021-01-26build-systems/gnu: Allow unpacking/repacking more kind of files.Maxim Cournoyer
Before this change, only plain directories, tar or zip archives were supported as the source of a package for the GNU build system; anything else would cause the unpack phase to fail. Origins relying on snippets would suffer from the same problem. This change adds the support to use files of the following extensions: .gz, .Z, .bz2, .lz, and .xz, even when they are not tarballs. Files of unknown extensions are treated as uncompressed files and supported as well. * guix/packages.scm (patch-and-repack): Only add the compressor utility to the PATH when the file is compressed. Bind more inputs in the mlet, and use them for decompressing single files. Adjust the decompression and compression routines. [decompression-type]: Remove nested variable. * guix/build/utils.scm (compressor, tarball?): New procedures. Move %xz-parallel-args to the new 'compression helpers' section. * tests/packages.scm: Add tests. Add missing copyright year for Jan. * guix/build/gnu-build-system.scm (first-subdirectory): Return #f when no sub-directory was found. (unpack): Support more file types, including uncompressed plain files.
2021-01-26utils: Add NIX_STORE_DIR as a candidate for the value of the store directory.Maxim Cournoyer
On the daemon side, nixStore gets set to the environment variable NIX_STORE_DIR, else the environment variable NIX_STORE else the compile time macro NIX_STORE_DIR (see the Settings::processEnvironment method in nix/libstore/globals.cc). When creating a build environment, it sets NIX_STORE with the value computed as described above. Hence, it's safer to look for both NIX_STORE_DIR and NIX_STORE in (guix build utils), so that it works in any context (build context or external context). * guix/build/utils.scm (%store-directory): Consider both NIX_STORE_DIR and NIX_STORE as environment variables.
2021-01-22store: Add 'find-roots' RPC.Ludovic Courtès
* guix/serialization.scm (read-string-pairs): New procedure. * guix/store.scm (read-arg): Add support for 'string-pairs'. (find-roots): New procedure. * tests/store.scm ("add-indirect-root and find-roots"): New test.
2021-01-21Revert "substitute: Remove extra 'newline' call."Ludovic Courtès
This reverts commit d5a1b0e86f248edd53c785b910b5d51ee708b0fc. This change turned out to be misguided; it would lead to "substitute:" lines being printed on the client side, without anything beyond the colon sign.
2021-01-21repl: Fix exception handling for interpreted code.Ludovic Courtès
The 'stack' variable could be #f when code is interpreted, which in practice happens when running in "legacy" mode--i.e., when 'open-inferior' invokes "guile" instead of "guix repl". * guix/repl.scm (send-repl-response)[handle-exception]: Check whether STACK is true before passing it to 'stack->frames'. * tests/inferior.scm ("&inferior-exception, legacy mode"): New test.
2021-01-21import, swh: Adjust to Guile-JSON 4.5.x unspecified value handling.Ludovic Courtès
* guix/import/cpan.scm (<cpan-release>)[home-page]: Add 'unspecified?' case. * guix/import/gem.scm (<gem>)[licenses]: Likewise. (json->gem-dependency-list): Likewise. * guix/swh.scm (<directory-entry>)[checksums]: Likewise.
2021-01-20archive: Note service type in ACL hint.Tobias Geerinckx-Rice
* guix/scripts/archive.scm (authorize-key): Mention guix-service-type.
2021-01-20import/cran: Add more invalid package names to ignore.Ricardo Wurmus
* guix/import/cran.scm (invalid-packages): Add more names.
2021-01-19transformations: Add '--with-latest'.Ludovic Courtès
* guix/upstream.scm (upstream-source-compiler): New procedure. (%updaters): Set! it. * guix/transformations.scm (transform-package-latest): New procedure. (%transformations): Add 'with-latest'. (%transformation-options, show-transformation-options-help/detailed): Add '--with-latest'. * tests/transformations.scm ("options->transformation, with-latest"): New test. * doc/guix.texi (Package Transformation Options): Document it.
2021-01-19environment: Fix '--root' option with relative file name.JOULAUD François
The path normalization of `--root` option of `guix environment` was buggy as it appended full argument after normalized directory. This patch fixes it. * guix/scripts/environment.scm (register-gc-root): Fix gc-root path normalization. * tests/guix-environment.sh: Add test. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-01-19modules: Recognize #:re-export-and-replace.Ludovic Courtès
* guix/modules.scm (extract-dependencies): Recognize #:re-export-and-replace, which was introduced in Guile 3.0.
2021-01-19system: Rename 'disk-image' command 'image'.Mathieu Othacehe
* guix/scripts/system.scm (system-derivation-for-action): Rename 'disk-image' command 'image'. Warn when using the now deprecated 'disk-image' command. (show-help): Adapt accordingly. (guix-system): Ditto. * tests/guix-system.sh: Ditto. * gnu/system/examples/bare-hurd.tmpl: Ditto. * doc/guix.texi (Building the Installation Image, Building the Installation Image for ARM Boards, Invoking guix pack, Invoking guix system): Adapt documentation.
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