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Conflicts:
gnu/packages/algebra.scm
gnu/packages/games.scm
gnu/packages/golang.scm
gnu/packages/kerberos.scm
gnu/packages/mail.scm
gnu/packages/python.scm
gnu/packages/ruby.scm
gnu/packages/scheme.scm
gnu/packages/tex.scm
gnu/packages/tls.scm
gnu/packages/version-control.scm
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* guix/download.scm (%mirrors): Remove defunct GNOME mirrors, and try
the canonical site first.
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Conflicts:
gnu/packages/bioinformatics.scm
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/emacs-xyz.scm
gnu/packages/gpodder.scm
gnu/packages/music.scm
gnu/packages/patches/glibc-bootstrap-system.patch
gnu/packages/python-xyz.scm
gnu/packages/shells.scm
gnu/packages/statistics.scm
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This is a follow-up of 7d873f194ca69d6096d28d7a224ab78e83e34fe1 that removes
the %build-inputs variable.
* guix/build-system/asdf.scm (asdf-build): Remove %build-inputs reference.
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This is a follow-up of a0f880afea3b29e817866de0170ed579738db2d1.
* guix/build-system/haskell.scm (haskell-build): Correctly handle the absence
of a "cabal-revision" input.
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* guix/licenses.scm (cc-sampling-plus-1.0): Remove variable.
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Fixes <https://issues.guix.gnu.org/49697>.
Reported by Philippe Swartvagher <philippe.swartvagher@inria.fr>.
* guix/transformations.scm (patched-source): New procedure.
(transform-package-patches)[package-with-extra-patches]: Use it
when (package-source p) is not an origin.
* tests/transformations.scm ("options->transformation, with-commit +
with-patch"): New test.
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Fixes <https://bugs.gnu.org/49439>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
Previously, a command such as:
guix environment pigx-scrnaseq
could lead to unbounded memory growth and could even fail to complete
when some items are missing from the store. This was because
'map/accumulate-builds' callees would keep making .drv build requests
that were turned into <unresolved> nodes; in this case, there are often
many identical build requests. Stopping accumulation earlier allows us
to unlock the situation by proceeding with the first few build requests
instead of spinning until we've accumulated all the build requests.
* guix/store.scm (map/accumulate-builds): Define 'accumulation-cutoff'.
Use a loop when iterating over LST and maintain a counter of unresolved
nodes met so far; return when the counter exceeds ACCUMULATION-CUTOFF.
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* guix/scripts/publish.scm (render-narinfo/cached): Remove leftover comment.
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This allows the user of 'cached-channel-instance' to install the build
handler of its choice. In particular, it allows "guix time-machine" to
install a build notifier with the right options instead of using the
defaults that 'cached-channel-instance' would pass to
'show-what-to-build*'.
* guix/inferior.scm (cached-channel-instance): Remove call to
'show-what-to-build*'.
(inferior-for-channels): Wrap body in 'with-build-handler'.
* guix/scripts/time-machine.scm (guix-time-machine): Use
'with-build-handler'.
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The value of %localstatedir, %storedir, and %sysconfdir is known to have
no impact on the compilation of the Guix modules. Thus, explicitly
build those modules against a (guix config) module that uses all the
default values. That way, a Guix installation that uses different
config values can still benefit from substitutes.
Reported by Ricardo Wurmus.
* guix/self.scm (%default-config-variables): New variable.
(make-config.scm): Add #:config-variables and honor it.
(compiled-guix)[*core-modules*]: Pass #:config-variables to
'make-config.scm'.
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* guix/download.scm (%mirrors): Remove defunct GNOME mirrors, and try
the canonical site first.
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* guix/scripts/import/go.scm (guix-import-go)[parse-options]: Use
PARSE-COMMAND-LINE instead of ARGS-FOLD*.
* guix/scripts/import/egg.scm (guix-import-egg)[parse-options]:
Likewise.
* guix/scripts/import/gem.scm (guix-import-gem)[parse-options]:
Likewise.
* guix/scripts/import/gnu.scm (guix-import-gnu)[parse-options]:
Likewise.
* guix/scripts/import/cpan.scm (guix-import-cpan)[parse-options]:
Likewise.
* guix/scripts/import/cran.scm (guix-import-cran)[parse-options]:
Likewise.
* guix/scripts/import/elpa.scm (guix-import-elpa)[parse-options]:
Likewise.
* guix/scripts/import/json.scm (guix-import-json)[parse-options]:
Likewise.
* guix/scripts/import/opam.scm (guix-import-opam)[parse-options]:
Likewise.
* guix/scripts/import/pypi.scm (guix-import-pypi)[parse-options]:
Likewise.
* guix/scripts/import/crate.scm (guix-import-crate)[parse-options]:
Likewise.
* guix/scripts/import/texlive.scm (guix-import-texlive)[parse-options]:
Likewise.
* guix/scripts/import/hackage.scm (guix-import-hackage)[parse-options]:
Likewise.
* guix/scripts/import/stackage.scm (guix-import-stackage)[parse-options]:
Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This reverts commit 4673f817938d9d2b1b40a072ab2e0c44a32ccc97, which reverted
commit 69dcc24c9f0cdfea674eb690e7755d26a25ced2b with the fix detailed below.
Thanks to Christopher Baines for reporting the failure and proposing a fix.
* guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data
files via the 'extra-files' argument.
* gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat
file to...
* gnu/local.mk (MODULES_NOT_COMPILED): ... here.
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This is a followup to 65e1d39f9fca8e560f3dedf01fa33cd251655eef.
* guix/licenses.scm (cc-sampling-plus-1.0): Remove export.
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Partly fixes <https://issues.guix.gnu.org/49439>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
When running the command:
guix environment pigx-scrnaseq --search-paths --no-grafts
this change reduces total heap allocations from 1.4GiB to 717MiB (49%)
and wall-clock time from 7.5s to 5.7s (24%).
Without '--no-grafts', heap allocations go from 2.1GiB to 1.4GiB (33%)
and wall-clock time from 12.1s to 10.9s (10%).
* guix/derivations.scm (coalesce-duplicate-inputs): Rewrite using a hash
table to make it O(N) rather than O(N²).
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Previously, (assoc-ref ...) would return a one-element list, leading to
an evaluation error while building the package ("wrong type to apply").
Regression introduced in 7d873f194ca69d6096d28d7a224ab78e83e34fe1.
Reported by Marius Bakke.
* guix/build-system/haskell.scm (haskell-build)[builder]: Adjust
argument to #:cabal-revision.
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Make sure that both:
(search-input-file inputs "/bin/sh") and (search-input-file inputs "bin/sh")
are supported.
* guix/build/utils (search-input-file): Trim leading slash character from
FILE.
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* guix/build-system/cmake.scm (cmake-cross-build)[builder]: Define
'%build-inputs' as it existed before
7d873f194ca69d6096d28d7a224ab78e83e34fe1.
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* guix/packages.scm (package-input, package-native-input): Remove.
(this-package-input): Use 'lookup-package-input' and
'lookup-package-propagated-input' instead of 'package-input'.
(this-package-native-input): Use 'lookup-package-native-input'
instead of 'package-input'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Re-testing 'guix package -A' using the default line buffering set in (guix
ui), there doesn't seem to be a performance gain to use block buffering, so
remove this extraneous side effect.
* guix/utils.scm (pretty-print-table): Do not set buffering mode to block.
Reported-by: Ludovic Courtès <ludo@gnu.org>
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Use version 20210325 for the tarballs, which is the latest one available on
the historical releases repository. And use subversion tag 2021.3 which is
the latest one available as well.
TeX Live dropped support for using the system’s poppler library after the
2020 version. Quoting from `m4/kpse-xpdf-flags.m4`:
# Support for our semi-homegrown libs/xpdf library. This is derived
# from xpdf source code, but xpdf does not distribute it as a library.
# It is used by pdftex (and nothing else) to read PDF images.
# Other engines use the semi-homegrown pplib library (q.v.) for that.
# The well-known poppler library is also originally derived from xpdf
# source code, but has been greatly revised and extended. TL used to
# (sort of) support poppler as the system xpdf, but after the TL 2020
# release we dropped this, because we switched XeTeX to use pplib, and
# nothing else used poppler. (No engines ever used poppler to generate
# their PDF output).
#
# poppler is aggressively developed, with requirements for new compilers
# and language versions. That's fine for them, but since we don't need
# anything new, it has become too time-consuming and problematic to
# continue to support it in the TL sources, when we don't have any
# requirement for it.
Therefore the main change in this commit is making the texlive-bin package
use the embedded pplib and xpdf libraries.
Another noteworthy change is to texlive-latex-l3packages, which now needs
to ship a few pre-generated files that cannot be reproduced during the
build process (the comments in the package definition have more details).
* guix/build-system/texlive.scm (%texlive-tag): Set to “texlive-2021.3”.
(%texlive-revision): Set to 59745.
* gnu/packages/tex.scm (hyph-utf8-scripts, texlive-docstrip,
texlive-unicode-data texlive-hyphen-base, texlive-metafont, texlive-cm,
texlive-courier, texlive-lm, texlive-knuth-lib, texlive-tex-plain,
texlive-hyphen-finnish, texlive-hyphen-german, texlive-hyph-utf8,
texlive-dehyph-exptl, texlive-kpathsea, texlive-latex-fancyvrb,
texlive-graphics-def, texlive-latex-graphics, texlive-hyperref,
texlive-oberdiek, texlive-latex-tools, texlive-latex-l3kernel,
texlive-l3build, texlive-luaotfload, texlive-latex-amsmath, texlive-amscls,
texlive-babel, texlive-generic-babel-german, texlive-babel-swedish,
texlive-psnfss, texlive-latex-draftwatermark, texlive-latex-etoc,
texlive-etoolbox, texlive-latex-polyglossia, texlive-tex-texinfo,
texlive-latex-bookmark, texlive-latex-cmap, texlive-latex-fancyhdr,
texlive-latex-kvoptions, texlive-latex-eso-pic, texlive-latex-multirow,
texlive-latex-parskip, texlive-latex-pdfpages, texlive-metapost,
texlive-latex-acmart, texlive-latex-preview, texlive-latex-acronym,
texlive-pdftex, texlive-latex-media9, texlive-latex-ocgx2,
texlive-latex-ms, texlive-latex-pgf, texlive-latex-pgf-generic,
texlive-latex-koma-script, texlive-generic-ltxcmds, texlive-bibtex,
texlive-context-base, texlive-context, texlive-beamer, texlive-pstricks,
texlive-tools, texlive-latex-xkeyval, texlive-csquotes, texlive-biblatex,
texlive-todonotes, texlive-microtype, texlive-caption, texlive-fontaxes,
texlive-cabin, texlive-newtx, texlive-xcharter, texlive-adjustbox,
texlive-tcolorbox): Update hash.
(texlive-extra-src, texlive-texmf-src): Update version to
“20210325”. Update hash.
(texlive-bin)[source]: Update version to “20210325”. Update hash. Preserve
‘libs/pplib’ and ‘libs/xpdf’.
[inputs]: Update hash for ‘texlive-scripts’. Remove ‘poppler’.
[arguments]: Remove “--with-system-poppler” and “--with-system-xpdf” from
‘#:configure-flags’. Remove build phase ‘use-code-for-new-poppler’.
(texlive-hyphen-schoolfinnish): Add public variable.
(texlive-hyphen-macedonian): Add 8bit patterns. Update hash.
(texlive-latex-base)[template]: Update hash.
[arguments]: Set ‘LUAINPUTS’ environment variable in build phase.
[native-inputs]: Update hash for ‘texlive-luatexconfig’.
[propagated-inputs]: Add ‘texlive-hyphen-schoolfinnish’,
‘texlive-latex-l3kernel’ and ‘texlive-latex-l3packages’.
(texlive-latex-l3packages)[source]: Use ‘texlive-origin’. Update hash. Add
generated files.
[arguments]: Adjust paths for ‘TEXINPUTS’ environment variable. Add build
phase ‘copy-generated-files’.
(texlive-texmf, texlive): Update version to “20210325”.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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The package texlive-latex-base in TeX Live 2021 will depend on
texlive-latex-l3kernel and texlive-latex-l3packages. Therefore we need to
remove their build dependency on texlive-latex-base to avoid a circular
dependency.
l3kernel and l3packages don’t need LaTeX during build, just IniTeX.
So to make them use it, modify texlive-build-system to allow disabling
the #:texlive-latex-base and #:tex-format parameters, and also add
a #:tex-engine parameter.
We also need to add texlive-docstrip as a native input, which was
previously provided by texlive-latex-base.
* gnu/packages/tex.scm (texlive-latex-l3kernel,
texlive-latex-l3packages)[arguments]: Add ‘#:tex-engine’, ‘#:tex-format’
and ‘#:texlive-latex-base’ parameters.
[native-inputs]: Add ‘texlive-docstrip’.
* guix/build-system/texlive.scm (lower)[build-inputs]: Don’t add
‘texlive-latex-base’ if its keyword parameter is false.
(texlive-build): Add ‘tex-engine’ keyword parameter.
[builder]: If a ‘tex-engine’ parameter was passed, use it. Otherwise, use
‘tex-format’ as the engine.
* guix/build/texlive-build-system.scm (compile-with-latex): Add ‘engine’
parameter. If the ‘format’ parameter is false, add “-ini” option to the
command line.
(build): Add ‘tex-engine’ parameter. Pass it down to ‘compile-with-latex’.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/hackage.scm (hackage-module->sexp)[dependencies]
[native-dependencies]: Make into a list of symbols.
[maybe-inputs]: Wrap INPUTS in 'list' instead of 'quasiquote'.
* tests/hackage.scm (match-ghc-foo)
(match-ghc-foo-6)
(match-ghc-foo-revision)
(match-ghc-foo-import): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/opam.scm (opam->guix-package): Wrap INPUTS and
NATIVE-INPUTS in 'list' instead of 'quasiquote'.
(dependency-list->inputs): Return a list of symbols.
* tests/opam.scm ("opam->guix-package"): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/gem.scm (make-gem-sexp): Wrap inputs in 'list' instead of
'quasiquote'.
* tests/gem.scm ("gem->guix-package")
("gem-recursive-import"): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/egg.scm (egg->guix-package): Generate dependency list from
a list of symbols.
[egg-parse-dependency]: Return a list of symbols.
[maybe-inputs]: Wrap INPUTS in 'list' instead of 'quasiquote'.
* tests/egg.scm (match-chicken-foo): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/import/print.scm (package->code)<license->code>: Update generated
licence object to match record constructor.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/build-system/minify.scm (default-uglify-js): Update uglifyjs package used.
* guix/build/minify-build-system.scm (minify): Use updated uglifyjs command name.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* guix/build/pack.scm (tar-base-options) [tar-supports-sort?]: Redirect error
output to void.
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Thanks to Guillem Jover <guillem@debian.org> on the OFTC's #debian-dpkg
channel for helping with troubleshooting.
Letting GNU Tar recursively walk the complete files hierarchy side-steps the
risks associated with providing a list of file names:
1. Duplicated files in the archive (recorded as hard links by GNU Tar)
2. Missing parent directories.
The above would cause dpkg to malfunction, for example by aborting early and
skipping triggers when there were missing parent directories.
* guix/scripts/pack.scm (self-contained-tarball/builder): Do not call
POPULATE-SINGLE-PROFILE-DIRECTORY, which creates extraneous files such as
/root. Instead, call POPULATE-STORE and INSTALL-DATABASE-AND-GC-ROOTS
individually to more precisely generate the file system. Replace the list of
files by the current directory, "." and streamline the way options are passed.
* gnu/system/file-systems.scm (reduce-directories): Remove procedure.
* tests/file-systems.scm ("reduce-directories"): Remove test.
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These fields, while optional per dpkg, are required by other tools such as
reprepro, commonly used to generate apt repositories.
* guix/scripts/pack.scm (debian-archive): Set the control file section field
to 'misc' and the priority field to 'optional'.
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* guix/scripts/pack.scm (self-contained-tarball/builder)
[extra-options]: New argument.
(self-contained-tarball, squashfs-image, docker-image)
(debian-archive): Likewise. Remove two TODO comments. Document
EXTRA-OPTIONS. Use the custom control files when provided.
(%deb-format-options): New variable.
(show-deb-format-options, show-deb-format-options/detailed): New procedures.
(%options): Register new options.
(show-help): Augment with new usage.
(guix-pack): Validate and propagate new argument values.
* doc/guix.texi (Invoking guix pack)[deb]: Document how to list advanced
options. Add an example.
* tests/pack.scm (deb archive...): Provide extra-options to the debian-archive
procedure, and validate that the provided files are embedded in the pack.
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* guix/import/go.scm: Fix indentation.
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Upgrade the go.mod parser to handle the full go.mod spec, and to gracefully
handle unexpected/malformed syntax. Restructure parser usage, making the
parse tree available for other uses.
guix/import/go.scm (parse-go.mod): Parse using (ice-9 peg) instead of
regex matching for more robustness. Return a list of directives.
(go.mod-directives): New procedure.
(go.mod-requirements): Likewise.
(go-module->guix-package): Use it.
(%go.mod-replace-directive-rx): Remove unused variable.
tests/go.scm (testing-parse-mod): Adjust accordingly.
(go.mod-requirements)
(fixture-go-mod-unparseable)
(fixture-go-mod-retract)
(fixture-go-mod-strings): New variables.
("parse-go.mod: simple")
("parse-go.mod: comments and unparseable lines")
("parse-go.mod: retract")
("parse-go.mod: raw strings and quoted strings")
("parse-go.mod: complete"): New tests.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/import/go.scm (fetch-module-meta-data): Parse all go-import meta
tags and return the first 'module-meta' with a matching import prefix.
[go-import->module-meta]: Extract parsing into new procedure.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/import/go.scm (go-package-licenses): Find license names in
'h2 // div // *text*' elements rather than 'h2 // *text*' elements.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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Implement a new function "api-url", which constructs URLs using relative URI
and "resolve-uri-reference" (which implements the algorithm specified in RFC
3986 section 5.2.2) for building the URL, instead of just appending
strings. This avoids issued if the server-url ends with a slash.
Since "api-url" uses URI-objects, it makes sense to also construct the
query-part of the URL here. For this "api-url" accepts optional
key-value-pairs.
New function "json-api-fetch" is a wrapper using "api-url".
* guix/ci.scm (api-url): New function. (build): Use it.
(json-api-fetch): New function. (queued-builds, latest-builds,
evaluation, latest-evaluations, evaluation-jobs: Use it.
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Use relative URIs and "resolve-uri-reference" (which implements the algorithm
specified in RFC 3986 section 5.2.2) for building the URL, instead of just
appending strings. This avoids issued if the cache-url ends with a slash.
* guix/substitutes.scm (narinfo-request): Use resolve-uri-reference for
constructing the url.
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The short option was listed in the help-text, but not recognized.
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* guix/ui.scm (display-profile-content-diff): Use pretty-print-table to format
output.
(display-profile-content): Likewise.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/scripts/package.scm (process-query): Use pretty-print-table when
listing installed and available packages.
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/utils.scm (pretty-print-table): New procedure.
Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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For cross-compilation, meson needs to be passed a
‘cross file’ with information on the architecture,
CPU type, endianness and operating system, and the
name of the cross-compiler binaries.
The new module (guix build meson-configuration) has
some utilities for writing these cross files, used
by 'make-cross-file' in a G-exp. The values for
the cross file are generated by 'make-machine-alist'
and 'make-binaries-alist'.
'make-machine-alist' and 'make-binaries-alist' live
on the host side, such that new architectures and operating
systems can be added without causing rebuilds for old
architectures.
All operating systems and targets supported by Guix are
theoretically supported, but only aarch64-linux-gnu,
powerpc64le-linux-gnu and arm-linux-gnueabihf have been
tested. i686-linux-gnu has also been tested with a previous
version of this patch series but required some changes
to 'cross-base.scm'.
This has been tested with:
$ ./pre-inst-env guix build glib --target=TARGET
* guix/build/meson-configuration.scm
(write-section-header): New procedure.
(write-assignment): New procedure.
(write-assignments): New procedure.
* guix/build-system/meson.scm
(target-hurd?): New predicate.
(make-machine-alist): New procedure.
(make-binaries-alist): New procedure.
(make-cross-file): New procedure.
(meson-cross-build): New procedure.
(lower)[build-inputs]: Add standard cross packages when cross-compiling.
Do not include regular 'inputs' when cross-compiling.
(lower)[host-inputs]: Include 'inputs' when cross-compiling.
(lower)[target-inputs]: Add cross packages when cross-compiling.
(lower)[build]: Call 'meson-cross-build' instead of 'cross-build'
when cross-compiling.
(lower)[target]: Set it.
(lower)[private-keywords]: Do not remove #:target when cross-compiling.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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These macros are intended to be used in build phases.
More precisely, (assoc-ref %build-inputs "input") can be
replaced by #$(this-package-input "input") or #+(this-package-native-input
"native-input") as appropriate.
* guix/packages.scm
(package-input, package-native-input): New (unexported) procedures.
(this-package-input, this-package-native-input): New macros.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* guix/utils.scm (target-x86-32?, target-x86-64?): New predicates.
* tests/utils.scm ("target-x86-32?", "target-x86-64?"): New tests.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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target-hurd? and target-linux? have docstrings, but
target-mingw? doesn't.
* guix/utils.scm (target-mingw?): Add a docstring.
Reported-By: Mathieu Othacehe <othacehe@gnu.org>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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