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2022-06-15import: Add hex.pm importer.Hartmut Goebel
hex.pm is a package repository for Erlang and Elixir. * guix/scripts/import.scm (importers): Add "hexpm". * guix/scripts/import/hexpm.scm, guix/import/hexpm.scm, guix/hexpm-download.scm: New files. * guix/import/utils.scm (source-spec->object): Add "hexpm-fetch" to list of fetch methods. * guix/upstream.scm (package-update/hexpm-fetch): New function. (%method-updates) Add it. * Makefile.am: Add them.
2022-06-15build-system: Add 'rebar-build-system'.Hartmut Goebel
* guix/build-system/rebar.scm, guix/build/rebar-build-system.scm: New files. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Update rebar-build-system section.
2022-06-15Revert "Add (guix extracting-download)."Hartmut Goebel
This reverts commit f63c79bf7674df012517f8e9148f94c611e35f32, which was missed when reverting the #51061 patch series for now in a1679b74c9aa20bb51bc4add82ebb7ba78926b9c.
2022-06-15ssh: Add #:connection-timeout parameter to 'open-ssh-session'.Ludovic Courtès
* guix/ssh.scm (open-ssh-session): Add #:connection-timeout parameter and honor it.
2022-06-15pull: Tweak cache directory validation code.Ludovic Courtès
This is a followup to 7c52cad0464175370c44bd4695e4c01a62b8268f. * guix/scripts/pull.scm (guix-pull): Move cache directory validation code to... (validate-cache-directory-ownership): ... here. New procedure. Use SRFI-71 instead of SRFI-11. Use 'formatted-message' for the error message, with ASCII quotation marks, and use Texinfo markup for '&fix-hint'.
2022-06-12pull: Fix typo in error message.Tobias Geerinckx-Rice
* guix/scripts/pull.scm (guix-pull): Report the right user name/ID.
2022-06-13challenge: Actually delete nars that have been extracted.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55809>. Reported by Vagrant Cascadian <vagrant@reproducible-builds.org>. * guix/scripts/challenge.scm (make-directory-writable): New procedure. (call-with-mismatches)[restore-file*]: New procedure. Use it instead of 'restore-file'.
2022-06-12guix: packages: Add %32bit-supported-systems, %64bit-supported-systems.Efraim Flashner
* guix/packages.scm (%32bit-supported-systems, %64bit-supported-systems): New variables. (%supported-systems): Rewrite using %32bit-supported-systems, %64bit-supported-systems.
2022-06-10least-authority: Fix typo.Maxim Cournoyer
* guix/least-authority.scm (least-authority-wrapper): Fix typo in doc.
2022-06-05pull: Fail if cache directory ownership is suspect.Tobias Geerinckx-Rice
New users frequently run ‘sudo guix pull’ which breaks subsequent unprivileged ‘guix pull’s until manually fixed with chmod -R. * guix/scripts/pull.scm (guix-pull): Fail if the cache directory (or its innermost extant parent) is not owned by the user pulling the Guix, with a hint about ‘sudo -i’.
2022-06-08guix: platform: Fix typo in lookup-platform-by-target.Josselin Poiret
* guix/platform.scm (lookup-platform-by-target): Fix typo system -> target. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-06-06packages: Add 'specifications->packages'.Antero Mejr
* gnu/packages.scm (specifications->packages): New procedure. * guix/scripts/home/import.scm (manifest+configuration-files->code): Use it. * tests/home-import.scm (match-home-environment-no-services) (match-home-environment-no-services-nor-packages) (match-home-environment-bash-service) (match-home-environment-bash-service-with-alias): Adjust 'packages' field accordingly. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-06import: hackage: Filter upper/mixed case dependencies too.Lars-Dominik Braun
* guix/import/hackage.scm (filter-dependencies): Convert OWN-NAMES to lowercase before filtering. (hackage-module->sexp): Remove #f from OWN-NAMES, which is used for unnamed (default) libraries. * tests/hackage.scm (test-cabal-internal-library-ignored): Add mismatched uppercase letters.
2022-06-06import: hackage: Filter internal libraries from inputs and native-inputs.Lars-Dominik Braun
Fixes <https://issues.guix.gnu.org/54760>. * guix/import/hackage.scm (filter-dependencies): Support multiple OWN-NAMES. (hackage-module->sexp): Filter OWN-NAMES from HACKAGE-DEPENDENCIES and HACKAGE-NATIVE-DEPENDENCIES. * tests/hackage.scm (test-cabal-internal-library-ignored): New variable. ("hackage->guix-package test internal libraries are ignored"): New testcase.
2022-06-06import: cabal: Support library namesLars-Dominik Braun
* guix/import/cabal.scm (make-cabal-parser): Add name to section. (is-lib): Add optional name to regular expression. (lex-rx-res): Support selecting different substring. (lex-lib): Match 2nd substring from IS-LIB. (lex-line): Adapt to changes for lex-lib. (cabal-library): Add name field and export CABAL-LIBRARY-NAME. (eval): Remove special case for 'library, which is not required any more. (make-cabal-section): Move special case for LIBRARY. * tests/hackage.scm (test-read-cabal-library-name): New variable. ("read-cabal test 1"): Adapt testcase to changed internal structure. ("read-cabal test: library name"): New testcase.
2022-06-06import: cabal: Allow curly bracket before else statement.Lars-Dominik Braun
* guix/import/cabal.scm (is-else): Turn into procedure. (lex-line): Move IS-ELSE… (lex-word): …here. * tests/hackage.scm (test-cabal-elif-brackets): Extend testcase.
2022-06-06import: cabal: Allow properties without space between key and value.Lars-Dominik Braun
* guix/import/cabal.scm (lex-word): Add colon to delimiters. * tests/hackage.scm (test-cabal-property-no-space): New variable. ("hackage->guix-package test properties without space"): New test.
2022-06-06import: cabal: Allow curly brackets in more positions.Lars-Dominik Braun
* guix/import/cabal.scm (is-layout-property): Do not expect end of line. (lex-layout-property): Check for newline. (lex-property): Stop reading on closing curly bracket. * tests/hackage.scm (test-read-cabal-2): New variable. ("read-cabal test: if brackets on the same line"): New test.
2022-06-06import: cabal: Support elif statement.Lars-Dominik Braun
Fixes <https://issues.guix.gnu.org/54752>. * guix/import/cabal.scm (make-cabal-parser): Replace if-then-else grammar case with elif-else, modify if-then accordingly. (is-elif): New procedure. (lex-elif): Likewise. (is-id): Add elif keyword. (lex-word): Add test for elif. * tests/hackage.scm (test-cabal-if): New variale. (test-cabal-else): Likewise. (test-cabal-elif): Likewise. (test-cabal-elif-brackets): Likewise. (match-ghc-elif): Likewise. ("hackage->guix-package test lonely if statement", "hackage->guix-package test else statement", "hackage->guix-package test elif statement", "hackage->guix-package test elif statement with brackets"): New tests.
2022-05-29guix system: Don't suggest reconfiguration during reconfiguration.Tobias Geerinckx-Rice
* guix/scripts/system.scm (process-action): Add 'reconfigure to the warning's guard clause. Reported by johnjaye on #guix.
2022-06-04guix home: Add 'edit' sub-command.Ludovic Courtès
* guix/scripts/home/edit.scm: New file. * Makefile.am (MODULES): Add it. * guix/scripts/home.scm (show-help): Add "edit". (process-command): Handle it. (guix-home): Add it. * po/guix/POTFILES.in: Add 'guix/scripts/home/edit.scm'. * doc/guix.texi (Invoking guix home): Document it.
2022-06-04guix system: Add 'edit' sub-command.Ludovic Courtès
* guix/scripts/system/edit.scm: New file. * Makefile.am (MODULES): Add it. * guix/scripts/system.scm (show-help): Mention "edit". (actions): Add it. (process-command): Handle it. * doc/guix.texi (Invoking guix system): Document it. * po/guix/POTFILES.in: Add guix/scripts/system/edit.scm.
2022-06-04edit: Extract 'spawn-editor' procedure.Ludovic Courtès
* guix/scripts/edit.scm (spawn-editor): New procedure, with code from... (guix-edit): ... here. Use it.
2022-06-04cache: Catch invalid 'last-expiry-cleanup'.zimoun
Fixes <http://issues.guix.gnu.org/55638>. * guix/cache.scm (maybe-remove-expired-cache-entries)[last-expiry-date]: Use 'get-string-all' + 'string->number' instead of 'read'; ignore invalid numbers. * tests/cache.scm ("maybe-remove-expired-cache-entries, empty cache") ("maybe-remove-expired-cache-entries, corrupted cache"): New tests. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-01shell: '--export-manifest -D x -D y' generates a valid manifest.Ludovic Courtès
* guix/scripts/shell.scm (manifest->code*): Add missing 'list' in generated 'concatenate-manifests' call. * tests/guix-shell-export-manifest.sh: Add test.
2022-05-29import: minetest: Fix typo.Tobias Geerinckx-Rice
* guix/import/minetest.scm (important-dependencies): Fix ‘choosen’ typo.
2022-05-31gnu: Remove python2-setuptools.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-setuptools): Delete variable. (python-setuptools)[properties]: Delete field. * gnu/packages/syncthing.scm (syncthing-gtk): Delete commented native input. * guix/lint.scm (check-inputs-should-not-be-an-input-at-all): Remove obsolete entries.
2022-05-31gnu: bazaar: Obsolete with breezy.Maxim Cournoyer
* gnu/packages/version-control.scm (bazaar): Deprecate package. * guix/build/bzr.scm (bzr-fetch): Adjust to use breezy; delete trailing #t. * guix/bzr-download.scm (bzr-package): Replace bazaar by breezy.
2022-05-31gnu: Remove python2-mccabe.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-mccabe): Delete variable.
2022-05-31diagnostics: Fix typo about 0-indexed COL in location.Maxim Cournoyer
* guix/diagnostics.scm (source-properties->location): The location column is 0-indexed, not 1-indexed (the same as in source-properties, so the code is accurate).
2022-05-31utils: Add a %guix-source-root-directory procedure.Maxim Cournoyer
* guix/utils.scm (%guix-source-root-directory): New procedure.
2022-05-31utils: Add a 'delete-expression' procedure.Maxim Cournoyer
* guix/utils.scm: Fix copyright lines and order imports. (edit-expression): Fix typo in doc. Add a new 'include-trailing-newline?' keyword argument. Update doc. (delete-expression): New procedure.
2022-05-31packages: Fix typo in package-superseded doc.Maxim Cournoyer
* guix/packages.scm (package-superseded): Fix typo.
2022-05-30store: 'map/accumulate-builds' preserves caches.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55721>. Starting from the switch to functional object caches ca. 9e5812ac59b01ff011ec0c5b0f437dfe85d6fcc7, we would be losing accumulated caches when aborting to the build handler. This patch fixes that. In particular, by preserving '%reference-cache-id', we avoid redundant 'query-references' RPCs, which accounted for a large part of the extra processing time. * guix/store.scm (build-accumulator): When returning an <unresolved> node, call 'set-store-connection-caches!' before and after to preserve caches. (map/accumulate-builds): Pass STORE as the first argument to the <unresolved> continuation.
2022-05-29store: Record cache lookups in 'references/cached'.Ludovic Courtès
* guix/store.scm (references/cached): Add call to 'record-cache-lookup!'.
2022-05-29Merge branch 'wip-r'Ricardo Wurmus
2022-05-29scripts/import: Use pretty printer from (guix scripts style).Ricardo Wurmus
* guix/scripts/import.scm (guix-import): Use pretty-print-with-comments. (newline-rewriting-port): Remove procedure.
2022-05-28guix: Upgrade to Bioconductor 3.15.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same.
2022-05-27substitute: Check for --help or --version options early.yarl-baudig@mailoo.org
Running `guix archive --authorize` sets /etc/guix/acl to 600 via with-atomic-file-output via mkstemp!. Then running `guix substitute --help/--version` fails on "permission denied". While "guix substitute" is an internal tool, the options --help and --version exist and you should be able to run those from the command line. * guix/scripts/substitute.scm (guix-substitute): Earlier check for --help or --version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-26guix package: Sort search results by package version.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55480>. Reported by Greg Hogan <code@greghogan.com>. * guix/scripts/package.scm (find-packages-by-description): When PACKAGE1 and PACKAGE2 have the same name, sort by version.
2022-05-25platforms: Remove the s390x platform.Mathieu Othacehe
Turns out this platform doesn't have a bootstrap tarball and should be considered as not supported for now. * guix/platforms/s390.scm: Remove it. * Makefile.am (MODULES): Adapt it. * doc/guix.texi (Foreign Architectures): Ditto.
2022-05-25platforms: Remove the hurd module.Mathieu Othacehe
The hurd platform is now defined in the (guix platforms x86) module. * guix/platforms/hurd.scm: Remove it. * Makefile.am (MODULES): Adapt it.
2022-05-25build-system: linux-module: Directly use-module (guix platform).Josselin Poiret
* guix/build-system/linux-module.scm (system->arch): Remove module-ref shenanigans. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-25Move (gnu platform) and (gnu platforms ...) to guix/.Josselin Poiret
* gnu/platform.scm: * gnu/platforms/arm.scm: * gnu/platforms/hurd.scm: * gnu/platforms/mips.scm: * gnu/platforms/powerpc.scm: * gnu/platforms/riscv.scm: * gnu/platforms/s390.scm: * gnu/platforms/x86.scm: Move to guix/. * Makefile.am: * doc/guix.texi (Porting to a New Platform): * etc/release-manifest.scm: * gnu/ci.scm: * gnu/image.scm: * gnu/local.mk: * gnu/packages/bioinformatics.scm: * gnu/packages/bootstrap.scm: * gnu/packages/cross-base.scm: * gnu/packages/instrumentation.scm: * gnu/packages/linux.scm: * gnu/system/image.scm: * gnu/system/images/hurd.scm: * gnu/system/images/novena.scm: * gnu/system/images/pine64.scm: * gnu/system/images/pinebook-pro.scm: * gnu/system/images/rock64.scm: * guix/scripts/build.scm: * guix/scripts/system.scm: * guix/self.scm: Update (gnu platform...) to (guix platform...). Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-24profiles: 'manifest->gexp' emits 'properties' field only when needed.Ludovic Courtès
Partly fixes <https://issues.guix.gnu.org/55499>. Reported by Ricardo Wurmus <rekado@elephly.net>. For a profile built with: guix install r-seurat r-cistopic r-monocle3 r-cicero-monocle3 this reduces the size of the 'manifest' file from 6.4M to 5.6M (12%). * guix/profiles.scm (manifest->gexp)[entry->gexp]: When PROPERTIES is empty, do not emit a 'properties' field.
2022-05-23lint: check-derivation: Catch all exceptions.Christopher Baines
Rather than raising the exception. I'm looking at this as the linux-module-build-system is broken in such a way that this causes the derivation linter to error. With this change, it correctly reports the issue. * guix/lint.scm (check-derivation): Catch all exceptions.
2022-05-23licenses: Add Expat No Attribution license.Kyle Meyer
* guix/licenses.scm (expat-0): New variable. * guix/import/utils.scm (spdx-string->license): Add MIT-0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23import: utils: Update list of SPDX licenses.Nicolas Graves
* guix/import/utils.scm (spdx-string->license): Update. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23scripts: package: Transform before creating manifest entries.Josselin Poiret
* guix/scripts/package.scm (options->installable): Add TRANSFORM argument, to be able to directly transform the new packages before creating their manifest entries. (process-actions): Remove transform-entry, and step3, transforming directly in step2. * tests/guix-package.sh: Add test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22self: Ship platform files.Mathieu Othacehe
* guix/self.scm (compiled-guix): Ship them.
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