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This is a followup to commit 98d6543f86d01486c2f6e808eedd97c601ba3e7a.
* gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust
accordingly.
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Fixes <https://bugs.gnu.org/32669>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/scripts/substitute.scm (guix-substitute): Swallow 'system-error'
exceptions around 'set-thread-name' call.
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* guix/build/syscalls.scm (syscall->procedure): Throw to 'system-error
with ENOSYS when NAME cannot be found.
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* guix/ui.scm (build-output-port): New procedure.
* guix/scripts/package.scm (%default-options): Print build trace.
(guix-package): Use build-output-port.
* guix/scripts/build.scm (guix-build): Use build-output-port.
Co-authored-by: Sahithi Yarlagadda <sahi@swecha.net>
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* guix/ui.scm (ansi-color-tables): New variable.
(color, colorize-string): New procedures.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* guix/gexp.scm (file-union): Import (guix build utils). Make the
parent directories of TARGET.
* tests/gexp.scm ("file-union"): New test.
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* guix/scripts/describe.scm (display-profile-info)[number]: Use the
current generation number instead of the last generation number.
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* guix/profiles.scm (package->manifest-entry): Add #:properties and
honor it.
* guix/scripts/package.scm (package-provenance)
(package->manifest-entry*): New procedures.
(transaction-upgrade-entry, options->installable): Use
'package->manifest-entry*' instead of 'package->manifest-entry'.
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* guix/scripts/describe.scm: New file.
* Makefile.am (MODULES): Add it.
(SH_TESTS): Add tests/guix-describe.sh.
* po/guix/POTFILES.in: Add it.
* guix/scripts/pull.scm (display-profile-content): Export.
* guix/describe.scm (current-profile, current-profile-entries): Export.
* tests/guix-describe.sh: New file.
* doc/guix.texi (Features): Mention 'guix pull' and provenance tracking.
(Invoking guix pull): Link to 'guix describe'.
(Channels): Likewise.
(Invoking guix describe): New node.
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* guix/scripts/pull.scm (show-help, %options): Add '--profile'.
(build-and-install): Change 'config-dir' argument to 'profile'.
(guix-pull): Honor '--profile'.
* doc/guix.texi (Invoking guix pull): Document it.
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Fixes <https://bugs.gnu.org/32618>.
Reported by Eric Brown <brown@fastmail.com>.
* guix/git.scm (update-cached-checkout): Remove "origin/" from default
REF. Define CANONICAL-REF and use it instead of REF.
(latest-repository-commit): Remove "origin/" from default REF.
* guix/channels.scm (%default-channels): Remove "origin/" from
'branch'.
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This fixes a regression introduced in
ca719424455465fca4b872c371daf2a46de88b33 whereby external channels would
fail to build due to the lack of (gcrypt …) modules.
* guix/channels.scm (channel-instance-derivations): Add 'guile-gcrypt'.
Pass it along CORE to 'build-channel-instance'.
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* guix/channels.scm (latest-channel-derivations): Remove.
(latest-channel-instances*, latest-channel-derivation): New procedures.
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This removes (guix hash) and (guix pk-crypto), which now live as part of
Guile-Gcrypt (version 0.1.0.)
* guix/gcrypt.scm, guix/hash.scm, guix/pk-crypto.scm,
tests/hash.scm, tests/pk-crypto.scm: Remove.
* configure.ac: Test for Guile-Gcrypt. Remove LIBGCRYPT and
LIBGCRYPT_LIBDIR assignments.
* m4/guix.m4 (GUIX_ASSERT_LIBGCRYPT_USABLE): Remove.
* README: Add Guile-Gcrypt to the dependencies; move libgcrypt as
"required unless --disable-daemon".
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/bash.scm, guix/derivations.scm, guix/docker.scm,
guix/git.scm, guix/http-client.scm, guix/import/cpan.scm,
guix/import/cran.scm, guix/import/crate.scm, guix/import/elpa.scm,
guix/import/gnu.scm, guix/import/hackage.scm,
guix/import/texlive.scm, guix/import/utils.scm, guix/nar.scm,
guix/pki.scm, guix/scripts/archive.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/scripts/pack.scm,
guix/scripts/publish.scm, guix/scripts/refresh.scm,
guix/scripts/substitute.scm, guix/store.scm,
guix/store/deduplication.scm, guix/tests.scm, tests/base32.scm,
tests/builders.scm, tests/challenge.scm, tests/cpan.scm,
tests/crate.scm, tests/derivations.scm, tests/gem.scm,
tests/nar.scm, tests/opam.scm, tests/pki.scm,
tests/publish.scm, tests/pypi.scm, tests/store-deduplication.scm,
tests/store.scm, tests/substitute.scm: Adjust imports.
* gnu/system/vm.scm: Likewise.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT.
(expression->derivation-in-linux-vm)[config]: Remove.
(iso9660-image)[config]: Remove.
(qemu-image)[config]: Remove.
(system-docker-image)[config]: Remove.
* guix/scripts/pack.scm: Adjust imports.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT.
(self-contained-tarball)[build]: Call 'make-config.scm' without
#:libgcrypt argument.
(squashfs-image)[libgcrypt]: Remove.
[build]: Call 'make-config.scm' without #:libgcrypt.
(docker-image)[config, json]: Remove.
[build]: Add GUILE-GCRYPT to the extensions Remove (guix config) from
the imported modules.
* guix/self.scm (specification->package): Remove "libgcrypt", add
"guile-gcrypt".
(compiled-guix): Remove #:libgcrypt.
[guile-gcrypt]: New variable.
[dependencies]: Add it.
[*core-modules*]: Remove #:libgcrypt from 'make-config.scm' call.
Add #:extensions.
[*config*]: Remove #:libgcrypt from 'make-config.scm' call.
(%dependency-variables): Remove %libgcrypt.
(make-config.scm): Remove #:libgcrypt.
* build-aux/build-self.scm (guile-gcrypt): New variable.
(make-config.scm): Remove #:libgcrypt.
(build-program)[fake-gcrypt-hash]: New variable.
Add (gcrypt hash) to the imported modules. Adjust load path
assignments.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, add GUILE-GCRYPT to the search
path.
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* guix/inferior.scm (inferior-package-home-page)
(inferior-package-location): New procedures.
* tests/inferior.scm ("inferior-packages"): Test them.
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* guix/channels.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/pull.scm: Use it.
(%default-options): Remove 'repository-url' and 'ref'.
(show-help, %options): Add '--channels'.
(%self-build-file, %pull-version, build-from-source)
(whole-package-for-legacy, derivation->manifest-entry): Remove. These
now exist in a similar form in (guix channels).
(build-and-install): Change 'source' to 'instances'. Remove #:url,
#:branch, and #:commit. Rewrite using 'channel-instances->manifest'.
(channel-list): New procedure.
(guix-pull): Parameterize %REPOSITORY-CACHE-DIRECTORY. Call
'honor-lets-encrypt-certificates!' unconditionally. Load
~/.config/guix/channels.scm. Rewrite to use (guix channels).
[use-le-certs?]: Remove.
* po/guix/POTFILES.in: Add (guix channels).
* doc/guix.texi (Invoking guix pull): Group the description of '--url',
'--commit', and '--branch'. Remove mention of 'GUIX_PULL_URL'. Add
references to "Channels". Document '--channels'.
(Channels): New node.
(Defining Packages): Link to "Channels" instead of "Package Modules".
(Invoking guix edit): Link to "Package Modules" instead of "Defining
Packages".
(Package Modules): Document both GUIX_PACKAGE_PATH and channels.
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* guix/describe.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm (%default-package-module-path): New variable.
(%package-module-path): Honor 'package-path-entries'.
* build-aux/update-NEWS.scm (main): Use %DEFAULT-PACKAGE-MODULE-PATH
instead of (last (%package-module-path)).
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* guix/self.scm (scheme-modules*): Move to...
* guix/discovery.scm (scheme-modules*): ... here. New procedure. Make
'sub-directory' an optional parameter.
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* guix/scripts/pack.scm (guix-pack): Fix "unknown pack format" error
message.
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Fixes a test failure introduced in
de5cbd4a38a33e0412f1c481fe8e01a871dc13e5.
* guix/records.scm (abi-check): Refer to TYPE in an unquoted context so
we get at the RTD.
* tests/records.scm ("ABI checks"): Adjust 'catch' handler to changes
in the 'record-abi-mismatch-error' arguments.
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* guix/import/pypi.scm (guess-requirements): Use upstream names.
(compute-inputs): Return the upstream dependency names as an additional value.
(make-pypi-sexp): Likewise.
(pypi->guix-package): Memoize it.
(pypi-recursive-import): New procedure.
* guix/scripts/import/pypi.scm (show-help, %options): Accept "recursive"
option.
(guix-import-pypi): Use pypi-recursive-import.
* doc/guix.texi (Invoking guix import): Document it.
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* guix/import/pypi.scm (guess-requirements): Extract "requires.txt" from the
egg-info directory in addition to "requirements.txt"; strip off version
constraints; use call-with-temporary-directory.
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* guix/import/hackage.scm (hackage-name->package-name): Export procedure.
* guix/import/stackage.scm (lts-info-packages-lts-info): Fix match expression.
(stackage-recursive-import): New procedure.
(stackage->guix-package): Memoize results.
* guix/scripts/import/stackage.scm (show-help, %options,
guix-import-stackage): Support recursive importing.
* doc/guix.texi (Invoking guix import): Document option.
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Previously, 'display-error' (as used by 'warn-about-load-error', for
instance) would be called with a wrong number of arguments when a
'record-abi-mismatch-error' was caught:
warning: failed to load '(gnu tests install)':
Backtrace:
[...]
ERROR: In procedure display-error:
Wrong number of arguments to #<procedure display-error (_ _ _ _ _ _)>
Now you get warnings and error reports as intended:
warning: failed to load '(gnu tests install)':
In procedure abi-check: <openssh-configuration>: record ABI mismatch; recompilation needed
warning: failed to load '(gnu tests ssh)':
In procedure abi-check: <openssh-configuration>: record ABI mismatch; recompilation needed
* guix/records.scm (print-record-abi-mismatch-error): Remove.
Remove top-level call to 'set-exception-printer!'.
(abi-check): Use arguments as expected by 'display-error'.
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The autoload hack was added a year ago, before 0.14.0, i.e., before any
release would depend on Guile-Git. Both 0.14.0 and 0.15.0 required
Guile-Git, and 'guix pull' now automatically pulls it in, so this hack
is no longer necessary.
* guix/scripts/pull.scm: Use (git) and (guix git). Remove top-level
call to 'module-autoload!'.
(ensure-guile-git!): Remove.
(guix-pull): Remove call to 'ensure-guile-git!'.
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Previously we'd have lots of useless entries on the search paths, such
as libtasn1, libidn2, zlib, gmp, etc. because they are propagated by
gnutls.
* guix/self.scm (guix-command)[source-directories, object-directories]:
New variables. Use them in the body of "guix-command". Filter their
items with 'file-exists?'.
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* guix/cve.scm (yearly-feed-uri): Remove "static." from the URL since
the web site now redirects to the URL without "static.".
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Fixes <https://bugs.gnu.org/19973>.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/build/debug-link.scm: New file.
* guix/build/graft.scm (%graft-hooks): New variable.
(graft): Add #:hooks and honor it.
* guix/grafts.scm (graft-derivation/shallow): Add (guix build
debug-link) and (guix elf) to #:modules.
* tests/debug-link.scm: New file.
* Makefile.am (MODULES): Add guix/build/debug-link.scm.
(SCM_TESTS): Add tests/debug-link.scm.
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* guix/build/graft.scm (graft): New procedure.
* guix/grafts.scm (graft-derivation/shallow)[build]: Use it instead of
inline code.
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Partly fixes <https://bugs.gnu.org/32326>.
Reported by Michael Bowcutt <mbowcutt@riseup.net>.
* guix/inferior.scm (open-inferior): Wrap 'setvbuf' call in 'cond-expand'.
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* guix/build-system/asdf.scm (default-lisp): Fix typo in "dependency".
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* guix/import/github.scm (latest-released-version): Filter out RELEASE
if it doesn't start with digit.
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This allows "guix refresh" to work for many packages where it would
previously fail with "no updater for PACKAGE".
* guix/import/github.scm (fetch-releases-or-tags): New procedure.
(latest-released-version): Use it instead of calling 'json-fetch'.
Adjust 'hash-ref' call.
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* guix/import/json.scm (json-fetch): Add #:headers argument and honor it.
* guix/import/github.scm (latest-released-version): Pass #:headers to
'json-fetch'.
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* guix/import/hackage.scm (hackage-recursive-import): New procedure.
(hackage-module->sexp): Return dependencies alongside dependencies.
(hackage->guix-package): Memoize results.
* guix/scripts/import/hackage.scm (show-help, %options, guix-import-hackage):
Support recursive importing.
* doc/guix.texi (Invoking guix import): Document option.
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The venerable search.cpan.org has retired[0].
[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html
* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
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Fixes <https://debbugs.gnu.org/32387>.
* guix/import/cabal.scm (eval-cabal): Avoid mis-match when the custom-setup
section cannot be created.
* guix/import/hackage.scm (cabal-custom-setup-dependencies->names): Do not
crash when cabal-package-custom-setup returns #F.
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* guix/ssh.scm (send-files): Compute the size of MISSING and display
it.
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* guix/build-system/meson.scm (default-patchelf): Remove.
(lower)[build-inputs]: Remove PATCHELF.
(meson-build): Don't delete 'fix-runpath' phase on armhf.
* guix/build/meson-build-system.scm (configure): Add "--c_link_args" and
"-cpp_link_args" instead of setting LDFLAGS.
(meson-build): Don't apply 'fix-runpath' phase.
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* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
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* guix/build/ruby-build-system.scm (replace-git-ls-files): Modify.
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* guix/import/pypi.scm (guix-package->pypi-name, pypi->guix-package): Update
docstrings.
(pypi-package?): Test for pypi.org, too.
(pypi-fetch): s/pypi.python.org/pypi.org/
* tests/pypi.scm ("guix-package->pypi-name, new URL style",
"pypi->guix-package", "pypi->guix-package, wheels"): Likewise.
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* guix/build-system/guile.scm, guix/build/guile-build-system.scm: New
files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'guile-build-system'.
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Threaded compression makes archives non-deterministic: the result depends on
the number of threads used for compressing. See <https://bugs.gnu.org/31015>.
This reverts commit 63102406f22412bb922de5549deb89d3594a38c0.
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Previously, store items registered in the database by this code (for
instance, store items retrieved by 'guix offload' and passed to
'restore-file-set') would have an mtime of 0 instead of 1.
This would cause problems for things like .go files: Guile would
consider them to be older than the corresponding .scm file, and
consequently it would ignore them and possibly use another (incorrect)
.go file.
Reported by Ricardo Wurmus.
* guix/store/database.scm (reset-timestamps): Pass 1, not 0, to
'utime'.
* tests/store-database.scm ("register-path"): Check the mtime of FILE
and REF.
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Fixes <https://bugs.gnu.org/32161>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
This mostly reverts 83099892e0cf0d9c59f5e1a0774331026e48baa8.
* guix/store/deduplication.scm (counting-wrapper-port): New procedure.
(nar-sha256): Use it.
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