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2020-12-09import: cran: Update the Bioconductor version to 3.12.Roel Janssen
* guix/import/cran.scm (%bioconductor-version): Set to 3.12. * guix/build-system/r.scm (bioconductor-uri): Update to 3.12.
2020-12-08import: opam: Adjust test to latest 'opam->guix-package' changes.Ludovic Courtès
This is a followup to a8dccd4bdc1e58219d4ba08fe1649bf0b8325f44, which broke the test. * guix/import/opam.scm (get-opam-repository): Prevent inlining. * tests/opam.scm ("opam->guix-package"): Mock 'get-opam-repository'.
2020-12-08substitute: Cache and reuse connections while substituting.Ludovic Courtès
That way, when fetching a series of substitutes from the same server(s), the connection is reused instead of being closed/opened for each substitutes, which saves on network round trips and TLS handshakes. * guix/http-client.scm (http-fetch): Add #:keep-alive? and honor it. * guix/progress.scm (progress-report-port): Add #:close? parameter and honor it. * guix/scripts/substitute.scm (at-most): Return the tail as a second value. (fetch): Add #:port and #:keep-alive? and honor them. (%max-cached-connections): New variable. (open-connection-for-uri/cached, call-with-cached-connection): New procedures. (with-cached-connection): New macro. (process-substitution): Wrap 'fetch' call in 'with-cached-connection'. Pass #:close? to 'progress-report-port'.
2020-12-08daemon: Run 'guix substitute --substitute' as an agent.Ludovic Courtès
This avoids spawning one substitute process per substitution. * nix/libstore/build.cc (class Worker)[substituter]: New field. [outPipe, logPipe, pid]: Remove. (class SubstitutionGoal)[expectedHashStr, status, substituter]: New fields. (SubstitutionGoal::timedOut): Adjust to check 'substituter'. (SubstitutionGoal::tryToRun): Remove references to 'outPipe' and 'logPipe'. Run "guix substitute --substitute" as an 'Agent'. Send the request with 'writeLine'. (SubstitutionGoal::finished): Likewise. (SubstitutionGoal::handleChildOutput): Change to fill in 'expectedHashStr' and 'status'. (SubstitutionGoal::handleEOF): Call 'wakeUp' unconditionally. (SubstitutionGoal::~SubstitutionGoal): Adjust to check 'substituter'. * guix/scripts/substitute.scm (process-substitution): Write "success\n" to stdout upon success. (%error-to-file-descriptor-4?): New variable. (guix-substitute): Set 'current-error-port' to file descriptor 4 unless (%error-to-file-descriptor-4?) is false. Remove "--substitute" arguments. Loop reading line from stdin. * tests/substitute.scm <top level>: Call '%error-to-file-descriptor-4?'. (request-substitution): New procedure. ("substitute, no signature") ("substitute, invalid hash") ("substitute, unauthorized key") ("substitute, authorized key") ("substitute, unauthorized narinfo comes first") ("substitute, unsigned narinfo comes first") ("substitute, first narinfo is unsigned and has wrong hash") ("substitute, first narinfo is unsigned and has wrong refs") ("substitute, two invalid narinfos") ("substitute, narinfo with several URLs"): Adjust to new "guix substitute --substitute" calling convention.
2020-12-08daemon: Use 'Agent' to spawn 'guix substitute --query'.Ludovic Courtès
* nix/libstore/local-store.hh (RunningSubstituter): Remove. (LocalStore)[runningSubstituter]: Change to unique_ptr<Agent>. [setSubstituterEnv, didSetSubstituterEnv]: Remove. [getLineFromSubstituter, getIntLineFromSubstituter]: Take an 'Agent'. * nix/libstore/local-store.cc (LocalStore::~LocalStore): Remove reference to 'runningSubstituter'. (LocalStore::setSubstituterEnv, LocalStore::startSubstituter): Remove. (LocalStore::getLineFromSubstituter): Adjust to 'run' being an 'Agent'. (LocalStore::querySubstitutablePaths): Spawn substituter agent if needed. Adjust to 'Agent' interface. (LocalStore::querySubstitutablePathInfos): Likewise. * nix/libstore/build.cc (SubstitutionGoal::tryToRun): Remove call to 'setSubstituterEnv' and add 'setenv' call for "_NIX_OPTIONS" instead. (SubstitutionGoal::finished): Remove 'readLine' call for 'dummy'. * guix/scripts/substitute.scm (%allow-unauthenticated-substitutes?): Remove second argument to 'make-parameter'. (process-query): Call 'warn-about-missing-authentication' when (%allow-unauthenticated-substitutes?) is #t. (guix-substitute): Wrap body in 'parameterize'. Set 'guix-warning-port' too. No longer exit when 'substitute-urls' returns the empty list. No longer print newline initially. * tests/substitute.scm (test-quit): Parameterize 'current-error-port' to account for the port changes in 'guix-substitute'.
2020-12-08database: Remove unnecessary module imports.Ludovic Courtès
* guix/store/database.scm: Remove unnecessary imports added in 4b9eecd322e566783369795ebea63a479b51f486.
2020-12-08guix: opam: Add coq support in the importer.Julien Lepiller
* guix/import/opam.scm (get-opam-repository): Add support for coq repositories. (ocaml-name->guix-name): Properly name coq package. * doc/guix.texi (Invoking guix import): Document it.
2020-12-08guix: opam: Add --repo argument to importer.Julien Lepiller
* guix/scripts/import/opam.scm (guix-import-opam): Pass --repo argument to recursive and non-recursive importers. * guix/import/opam.scm (get-opam-repository): Select proper repository location depending on a new repo argument. (opam->guix-package): Use get-opam-repository in the procedure body.
2020-12-08guix: opam: Pass default repository to recursive importer.Julien Lepiller
* guix/import/opam.scm (opam->guix-package): Rename #:repository key to #:repo. (opam-recursive-import): Pass #:repo keyword. * tests/opam.scm (opam->guix-package): Rename #:repository to #:repo.
2020-12-08guix: opam: Filter implicit inputs.Julien Lepiller
* guix/import/opam.scm (opam->guix-package, depends->inputs): Filter out implicit inputs.
2020-12-08guix: opam: Remove stray `pk'.Julien Lepiller
* guix/import/opam.scm (opam->guix-package): Remove stray `pk'.
2020-12-07ci: Add "evaluation" method.Mathieu Othacehe
* guix/ci.scm (evaluation): New procedure.
2020-12-07ci: Add evaluation field to build record.Mathieu Othacehe
* guix/ci.scm (<build>): Add "evaluation" field.
2020-12-07profiles: Delete duplicate manifest entries in packages->manifest.Leo Prikler
* gnu/profiles.scm (packages->manifest): Delete duplicate entries. * tests/profiles.scm ("packages->manifest, no duplicates"): New test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-07profiles: Remove duplicates in manifest transactions.Leo Prikler
Fixes <https://bugs.gnu.org/23874>. Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>. * guix/profiles.scm (manifest-transaction-effects): Delete duplicates in install and remove. Let multiple upgrades and downgrades shadow previous transactions of the same kind. * tests/profiles.scm ("manifest-transaction-effects no double install or upgrades") ("manifest-transaction-effects no double downgrade") ("manifest-transaction-effects no double removal"): New tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-05ui: Handle multiword and empty $PAGER values.Tobias Geerinckx-Rice
* guix/ui.scm (call-with-paginated-output-port): Empty PAGER values disable paging. Non-empty ones are split into command arguments. Reported by Daniel Brooks <db48x@db48x.net>.
2020-12-05pull: Accept no non-option arguments.Tobias Geerinckx-Rice
* guix/scripts/pull.scm (guix-pull): LEAVE if any non-option arguments were passed.
2020-12-05scripts: discover: Check for cache file existence.Mathieu Othacehe
Fixes: https://issues.guix.gnu.org/45045. * guix/scripts/discover.scm (read-substitute-urls): Check for file existence.
2020-12-04git: 'reference-available?' handles short commit IDs.Ludovic Courtès
Reported by Simon Tournier on #guix. Until now 'reference-available?' would always return #f when passed a short commit ID. * guix/git.scm (reference-available?): Call 'object-lookup-prefix' when COMMIT is shorter than 40 characters.
2020-12-04import: crate: Skip tests when Guile-Semver is missing.Ludovic Courtès
* guix/import/crate.scm: Add comment for the 'module-autoload!' calls. * tests/crate.scm (have-guile-semver?): New variable. ("crate->guix-package", "cargo-recursive-import") ("cargo-recursive-import-hoors-existing-packages"): Skip when HAVE-GUILE-SEMVER? is false.
2020-12-04scripts: substitute: Fix discover option.Mathieu Othacehe
The discover option can be unset or set to "yes/no". Handle both cases. * guix/scripts/substitute.scm (%local-substitute-urls): Fix discover option.
2020-12-04import/cran: Do not attempt to generate definitions for failed imports.Ricardo Wurmus
* guix/scripts/import/cran.scm (guix-import-cran): Remove failed imports from list of packages to define.
2020-12-04import/cran: Fix calls to CRAN->GUIX-PACKAGE.Ricardo Wurmus
* guix/import/cran.scm (cran->guix-package, latest-bioconductor-release): Invoke CRAN->GUIX-PACKAGE with #:REPO keyword argument.
2020-12-03build-system: Add chicken-build-system.raingloom
* guix/build-system/chicken.scm: New file. * guix/build/chicken-build-system.scm: New file. * Makefile.am: Add them. * doc/guix.texi: Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-03self: Factorize package dependency enumeration.Ludovic Courtès
* guix/self.scm (transitive-package-dependencies): New procedure. (compiled-guix)[dependencies]: Use it.
2020-12-03gnu: guile-semver: Switch to Guile 3.0.Ludovic Courtès
* gnu/packages/guile-xyz.scm (guile-semver)[inputs]: Use GUILE-3.0. (guile3.0-semver): Define in terms of 'deprecated-package'. (guile2.2-semver): New variable.
2020-12-02import: crate: Use existing package satisfying semver requirement.Hartmut Goebel
If a package satisfying the dependency's semver requirement already exists, use it. Prior to this change the highest version matching the semver requirement was used (and imported in case it was not defined as package already). When resolving a dependency (now done in `sort-map-dependencies`), first search for a package matching the semver requirement and only if this fails reach out for a crate. * guix/import/crate.scm (crate->guix-package)[find-package-version]: New function. [dependency-name+version]: New function. [sort-map-dependencies]: Use it instead of lambda function. * tests/crate.scm (test-doctool-crate, test-doctool-dependencies): New variables. ("self-test …", "cargo-recursive-import-hoors-existing-packages"): New tests.
2020-12-02import: crate: Trim version for names after left-most non-zero part.Hartmut Goebel
This complies to how versions are matched for caret requirements in crates: An update is allowed if the new version number does not modify the left-most non-zero digit in the major, minor, patch grouping. * guix/import/crate.scm (version->semver-prefix): New function. (make-crate-sexp)[format-inputs]: Use it. (make-crate-sexp): Use it to pass shorter version to package->definition. * guix/import/utils.scm (package->definition): Change optional parameter APPEND-VERSION? into APPEND-VERSION?/STRING. If it is a string, append its value to name. * tests/crate.scm: Adjust tests accordingly.
2020-12-02import: utils: Trim patch version from names.Hartmut Goebel
This remove the patch version from generated package names. For example 'rust-my-crate-1.1.2' now becomes 'rust-my-crate-1.1'. * guix/import/utils.scm (package->definition): Trim patch version from generated package names. * tests/crate.scm: (cargo>guix-package, cargo-recursive-import): Likewise.
2020-12-02import: crate: Parameterized importing of dev dependencies.Martin Becze
The recursive crate importer will now include development dependencies only for the top level package, but not for any of the recursively imported packages. Also #:skip-build will be false for the top-most package. * guix/import/crate.scm (make-crate-sexp): Add the key BUILD?. (crate->guix-package): Add the key INCLUDE-DEV-DEPS?. (crate-recursive-import): Likewise. * guix/scripts/import/crate.scm (guix-import-crate): Likewise. * tests/crate.scm (cargo-recursive-import): Likewise.
2020-12-02import: crate: Memorize crate->guix-package.Martin Becze
This adds memorization to procedures that involve network lookups. 'lookup-crate*' is used on every dependency of a package to get its version list. It is also used to lookup a package's metadata. 'crate-recursive-import' is also memorized since creating the same package twice will trigger a lookup on its dependencies. * guix/import/crate.scm (lookup-crate*): New procedure. (crate->guix-package): Memorize package metadata lookups. (crate-recursive-import): Memorize package creation.
2020-12-02import: crate: Use guile-semver to resolve module versions.Martin Becze
* guix/import/crate.scm: Add guile-semver as a soft dependency. (make-crate-sexp): Don't allow other keys. Add '#:skip-build?' to build system args. Pass a VERSION argument to 'cargo-inputs'. (crate->guix-package): Use guile-semver to resolve the correct module versions. Treat "build" dependencies as normal dependencies. (crate-name->package-name): Reuse the procedure 'guix-name' instead of duplicating its logic. * guix/import/utils.scm (package-names->package-inputs): Implement handling of (name version) pairs. * guix/scripts/import/crate.scm (guix-import-crate): Use crate-recursive-import instead of duplicate code. * tests/crate.scm (recursive-import): Change test packages versions to be distinguishable. Add version data to the test. Check created symbols, too. Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
2020-12-02import: utils: 'recursive-import' accepts an optional version parameter.Martin Becze
This adds a key VERSION to 'recursive-import' and moves the parameter REPO to a key. This also changes all the places that rely on 'recursive-import'. * guix/import/utils.scm (recursive-import): Add the VERSION key. Make REPO a key. (package->definition): Add optional 'append-version?'. * guix/scripts/import/crate.scm (guix-import-crate): Add the VERSION key. * guix/import/crate.scm (crate->guix-package): Add the VERSION key. (crate-recursive-import): Pass VERSION to recursive-import, remove now unnecessary code. * guix/import/cran.scm (cran->guix-package, cran-recursive-import): Change the REPO parameter to a key. * guix/import/elpa.scm (elpa->guix-package, elpa-recursive-import): Likewise. * guix/import/gem.scm (gem->guix-package, recursive-import): Likewise. * guix/import/opam.scm (opam-recurive-import): Likewise. * guix/import/pypi.scm (pypi-recursive-import): Likewise. * guix/import/stackage.scm (stackage-recursive-import): Likewise. * guix/scripts/import/cran.scm (guix-import-cran): Likewise. * guix/scripts/import/elpa.scm (guix-import-elpa): Likewise. * tests/elpa.scm (eval-test-with-elpa): Likewise. * tests/import-utils.scm (recursive-import): Likewise. Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
2020-12-02guix: self: Add guile-semver as a depenedency.Martin Becze
* guix/self.scm (compiled-guix): Add guile-semver as a depenedency.
2020-12-01upgrade: Allow several regexps.zimoun
Fixes <https://bugs.gnu.org/44928>. Reported by Luis Felipe <luis.felipe.la@protonmail.com>. * guix/scripts/upgrade.scm (guix-upgrade): Allow several regexps and remove "extraneous arguement" check. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-11-29processes: Add '--format' and the "normalized" format.John Soo
* guix/scripts/processes.scm (lock->recutils): New procedure. (daemon-session->recutils): Use it. (daemon-sessions->recutils, session-key->recutils) (session-scalars->normalized-record) (child-process->normalized-record) (daemon-sessions->normalized-record): New procedures. (session-rec-type, lock-rec-type, child-process-rec-type) (%available-formats): New variables. (list-formats): New procedure. (%options, show-help): Add '--format'. (%default-options): New variable. (guix-processes): Use 'parse-command-line' instead of 'args-fold*'. Honor the 'format' value in OPTIONS. * doc/guix.texi (Invoking guix processes): Document '--format'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-29processes: Put ChildProcess and ChildPID on separate lines.John Soo
* guix/scripts/processes.scm (daemon-session->recutils): Put child process information in separate fields. * doc/guix.texi (Invoking guix processes): Document change in output of 'guix processes'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-29Make "guile-avahi" dependency optional.Mathieu Othacehe
* configure.ac (HAVE_GUILE_AVAHI): New conditional. * Makefile.am (MODULES): Add "guix/avahi.scm" and "guix/scripts/discover.scm" if HAVE_GUILE_AVAHI is set. * guix/scripts/publish.scm: Autoload (guix avahi). * guix/scripts/substitute.scm: Autoload (guix scripts discovery).
2020-11-29self: Fix guile-avahi lookup.Mathieu Othacehe
This is a follow-up of 375cc7dea20da7117c9459e4a4d15144095e015b. * guix/self.scm (specification->package): Search for "guile-avahi" in (gnu package guile-xyz).
2020-11-29Use substitute servers on the local network.Mathieu Othacehe
* guix/scripts/discover.scm: New file. * Makefile.am (MODULES): Add it. * nix/nix-daemon/guix-daemon.cc (options): Add "discover" option, (parse-opt): parse it, (main): start "guix discover" process when the option is set. * guix/scripts/substitute.scm (%local-substitute-urls): New variable, (substitute-urls): add it. * gnu/services/base.scm (<guix-configuration>): Add "discover?" field, (guix-shepherd-service): honor it. * doc/guix.texi (Invoking guix-daemon): Document "discover" option, (Base Services): ditto.
2020-11-29publish: Add advertising support.Mathieu Othacehe
* guix/scripts/publish.scm (%options): Add "--advertise" option. (show-help): Document it. (service-name): New procedure, (publish-service-type): new variable. (run-publish-server): Add "advertise?" and "port" parameters. Use them to publish the server using Avahi. (guix-publish): Pass the "advertise?" option to "run-publish-server". * gnu/services/base.scm (<guix-publish-configuration>): Add "advertise?" field. (guix-publish-shepherd-service): Honor it.
2020-11-29Add Avahi support.Mathieu Othacehe
* guix/avahi.scm: New file. * Makefile.am (MODULES): Add it. * configure.ac: Add Guile-Avahi dependency. * doc/guix.texi (Requirements): Document it. * gnu/packages/package-management.scm (guix)[native-inputs]: Add "guile-avahi", [propagated-inputs]: ditto. * guix/self.scm (specification->package): Add guile-avahi. (compiled-guix): Ditto.
2020-11-28Merge branch 'staging'Marius Bakke
2020-11-28channels: Expose the default channel in %default-channel.Zhu Zihao
* guix/channels(%default-guix-channel): New variable taken from the inner of %default-channels. (%default-channels): Refactored. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-26deploy: Let key-and-args exceptions through.Ludovic Courtès
Fixes <https://bugs.gnu.org/44825>. Reported by Christopher Lemmer Webber <cwebber@dustycloud.org>. * guix/ui.scm (guard*): Export. * guix/scripts/deploy.scm (deploy-machine*): Use 'guard*' instead of 'guard'. Add '&exception-with-kind-and-args' case.
2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-25weather: Fix '--substitute-urls'.zimoun
Fixes <https://bugs.gnu.org/44574>. Reported by Efraim Flashner <efraim@flashner.co.il>. * guix/scripts/weather.scm (guix-weather): Fix when substitute-urls is a list. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-11-23Merge branch 'master' into stagingMarius Bakke
2020-11-23store: Fix ensure-path docstring.Mathieu Othacehe
Suggested by Ludovic Courtès. * guix/store.scm (ensure-path): Fix the docstring.
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