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2022-05-31diagnostics: Fix typo about 0-indexed COL in location.Maxim Cournoyer
* guix/diagnostics.scm (source-properties->location): The location column is 0-indexed, not 1-indexed (the same as in source-properties, so the code is accurate).
2022-05-31utils: Add a %guix-source-root-directory procedure.Maxim Cournoyer
* guix/utils.scm (%guix-source-root-directory): New procedure.
2022-05-31utils: Add a 'delete-expression' procedure.Maxim Cournoyer
* guix/utils.scm: Fix copyright lines and order imports. (edit-expression): Fix typo in doc. Add a new 'include-trailing-newline?' keyword argument. Update doc. (delete-expression): New procedure.
2022-05-31packages: Fix typo in package-superseded doc.Maxim Cournoyer
* guix/packages.scm (package-superseded): Fix typo.
2022-05-30store: 'map/accumulate-builds' preserves caches.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55721>. Starting from the switch to functional object caches ca. 9e5812ac59b01ff011ec0c5b0f437dfe85d6fcc7, we would be losing accumulated caches when aborting to the build handler. This patch fixes that. In particular, by preserving '%reference-cache-id', we avoid redundant 'query-references' RPCs, which accounted for a large part of the extra processing time. * guix/store.scm (build-accumulator): When returning an <unresolved> node, call 'set-store-connection-caches!' before and after to preserve caches. (map/accumulate-builds): Pass STORE as the first argument to the <unresolved> continuation.
2022-05-29store: Record cache lookups in 'references/cached'.Ludovic Courtès
* guix/store.scm (references/cached): Add call to 'record-cache-lookup!'.
2022-05-29Merge branch 'wip-r'Ricardo Wurmus
2022-05-29scripts/import: Use pretty printer from (guix scripts style).Ricardo Wurmus
* guix/scripts/import.scm (guix-import): Use pretty-print-with-comments. (newline-rewriting-port): Remove procedure.
2022-05-28guix: Upgrade to Bioconductor 3.15.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same.
2022-05-27substitute: Check for --help or --version options early.yarl-baudig@mailoo.org
Running `guix archive --authorize` sets /etc/guix/acl to 600 via with-atomic-file-output via mkstemp!. Then running `guix substitute --help/--version` fails on "permission denied". While "guix substitute" is an internal tool, the options --help and --version exist and you should be able to run those from the command line. * guix/scripts/substitute.scm (guix-substitute): Earlier check for --help or --version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-26guix package: Sort search results by package version.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55480>. Reported by Greg Hogan <code@greghogan.com>. * guix/scripts/package.scm (find-packages-by-description): When PACKAGE1 and PACKAGE2 have the same name, sort by version.
2022-05-25platforms: Remove the s390x platform.Mathieu Othacehe
Turns out this platform doesn't have a bootstrap tarball and should be considered as not supported for now. * guix/platforms/s390.scm: Remove it. * Makefile.am (MODULES): Adapt it. * doc/guix.texi (Foreign Architectures): Ditto.
2022-05-25platforms: Remove the hurd module.Mathieu Othacehe
The hurd platform is now defined in the (guix platforms x86) module. * guix/platforms/hurd.scm: Remove it. * Makefile.am (MODULES): Adapt it.
2022-05-25build-system: linux-module: Directly use-module (guix platform).Josselin Poiret
* guix/build-system/linux-module.scm (system->arch): Remove module-ref shenanigans. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-25Move (gnu platform) and (gnu platforms ...) to guix/.Josselin Poiret
* gnu/platform.scm: * gnu/platforms/arm.scm: * gnu/platforms/hurd.scm: * gnu/platforms/mips.scm: * gnu/platforms/powerpc.scm: * gnu/platforms/riscv.scm: * gnu/platforms/s390.scm: * gnu/platforms/x86.scm: Move to guix/. * Makefile.am: * doc/guix.texi (Porting to a New Platform): * etc/release-manifest.scm: * gnu/ci.scm: * gnu/image.scm: * gnu/local.mk: * gnu/packages/bioinformatics.scm: * gnu/packages/bootstrap.scm: * gnu/packages/cross-base.scm: * gnu/packages/instrumentation.scm: * gnu/packages/linux.scm: * gnu/system/image.scm: * gnu/system/images/hurd.scm: * gnu/system/images/novena.scm: * gnu/system/images/pine64.scm: * gnu/system/images/pinebook-pro.scm: * gnu/system/images/rock64.scm: * guix/scripts/build.scm: * guix/scripts/system.scm: * guix/self.scm: Update (gnu platform...) to (guix platform...). Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-24profiles: 'manifest->gexp' emits 'properties' field only when needed.Ludovic Courtès
Partly fixes <https://issues.guix.gnu.org/55499>. Reported by Ricardo Wurmus <rekado@elephly.net>. For a profile built with: guix install r-seurat r-cistopic r-monocle3 r-cicero-monocle3 this reduces the size of the 'manifest' file from 6.4M to 5.6M (12%). * guix/profiles.scm (manifest->gexp)[entry->gexp]: When PROPERTIES is empty, do not emit a 'properties' field.
2022-05-23lint: check-derivation: Catch all exceptions.Christopher Baines
Rather than raising the exception. I'm looking at this as the linux-module-build-system is broken in such a way that this causes the derivation linter to error. With this change, it correctly reports the issue. * guix/lint.scm (check-derivation): Catch all exceptions.
2022-05-23licenses: Add Expat No Attribution license.Kyle Meyer
* guix/licenses.scm (expat-0): New variable. * guix/import/utils.scm (spdx-string->license): Add MIT-0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23import: utils: Update list of SPDX licenses.Nicolas Graves
* guix/import/utils.scm (spdx-string->license): Update. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23scripts: package: Transform before creating manifest entries.Josselin Poiret
* guix/scripts/package.scm (options->installable): Add TRANSFORM argument, to be able to directly transform the new packages before creating their manifest entries. (process-actions): Remove transform-entry, and step3, transforming directly in step2. * tests/guix-package.sh: Add test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22self: Ship platform files.Mathieu Othacehe
* guix/self.scm (compiled-guix): Ship them.
2022-05-22scripts: build: Highlight the current system with --list-systems.Mathieu Othacehe
* guix/scripts/build.scm (list-systems): Highlight it.
2022-05-22linux: Remove system->linux-architecture procedure.Mathieu Othacehe
* gnu/packages/linux.scm (system->linux-architecture): Remove it. (make-linux-libre-headers*, make-linux-libre*): Adapt them. * guix/build-system/linux-module.scm (system->arch): Adapt it. * gnu/packages/instrumentation.scm (uftrace): Ditto. * gnu/packages/cross-base.scm (cross-kernel-headers): Ditto. * gnu/packages/bioinformatics.scm (ncbi-vdb): Ditto. * doc/guix.texi (Porting to a new platform): Update it.
2022-05-22scripts: Add --list-systems and --list-targets options.Mathieu Othacehe
Also factorize the --system and --target build options. Check that the passed system and target arguments are known platforms. * doc/guix.texi (Additional Build Options): Document the new --list-systems and --list-targets options. * guix/scripts/build.scm (show-cross-build-options-help, show-emulated-build-options-help, list-systems, list-targets): New procedures. (%standard-cross-build-options, %standard-emulated-build-options): New variables. (show-help): Remove --system and --target entries and use show-cross-build-options-help and show-emulated-build-options-help procedures instead. (%options): Remove --system and --target entries and use %standard-cross-build-options and %standard-emulated-build-options variables instead. * guix/scripts/archive.scm (show-help, %options): Adapt them. * guix/scripts/environment.scm: Ditto. * guix/scripts/graph.scm: Ditto. * guix/scripts/pack.scm: Ditto. * guix/scripts/pull.scm: Ditto. * guix/scripts/size.scm: Ditto. * guix/scripts/weather.scm: Ditto. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-22gnu: elm: Support 'elm reactor'.Philip McGrath
* gnu/packages/elm.scm (elm): Rename to ... (elm-sans-reactor): ... this new variable. [synopsis, description]: Tweak. (elm): New variable. * guix/build-system/elm.scm (default-elm): Use elm-sans-reactor. * doc/guix.texi (Build Systems)[elm-build-system]: Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22import: Add Elm importer.Philip McGrath
* guix/import/elm.scm, guix/scripts/import/elm.scm: New files. * Makefile.am (MODULES): Add them. * guix/scripts/import.scm (importers): Add "elm". * doc/guix.texi (Invoking guix import): Document Elm importer. * doc/contributing.texi (Elm Packages): Mention it. * tests/elm.scm ("(guix import elm)"): New test group. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22import: json: Accept '#:http-fetch' in 'json-fetch'.Philip McGrath
For example, supplying 'http-fetch/cached' would enable caching. * guix/import/json.scm (json-fetch): Add '#:http-fetch' argument. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22http-client: 'http-fetch/cached' converts strings to URIs.Philip McGrath
* guix/http-client.scm (http-fetch/cached): Use 'string->uri' if URI is a string, as with 'http-fetch'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22http-client: Accept '#:headers' in 'http-fetched/cached'.Philip McGrath
Callers can supply alternative headers as with 'http-fetch'. * guix/http-client.scm (http-fetch/cached): Add '#:headers' argument. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22build-system/elm: Add implicit Elm inputs.Philip McGrath
* guix/build-system/elm.scm (default-elm-core): New variable. (default-elm-json): Likewise (lower): Use them as implicit inputs when applicable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22guix: Add elm-build-system.Philip McGrath
* gnu/packages/patches/elm-offline-package-registry.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/elm.scm (elm): Use it. * guix/build-system/elm.scm, guix/build/elm-build-system.scm, tests/elm.scm: New files. * Makefile.scm (MODULES, SCM_TESTS): Add them. * doc/guix.texi (Build Systems): Document 'elm-build-system'. * doc/contributing.texi (Elm Packages): New section. Document naming conventions and utilities. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-20guix: Remove unused import.Ricardo Wurmus
* guix/scripts/pull.scm: Do not import with-file-lock/no-wait from (guix build syscalls).
2022-05-20guix: Remove duplicate definitions of dump-port.Ricardo Wurmus
* guix/store.scm (dump-port): Remove procedure; autoload from (guix build utils) instead. * guix/store/deduplication.scm (dump-port): Remove procedure; unhide dump-port from (guix build utils).
2022-05-20inferior: Close duplicate socketpair file descriptor.Ludovic Courtès
* guix/inferior.scm (open-bidirectional-pipe): Pass SOCK_CLOEXEC to 'socketpair'. * tests/inferior.scm ("close-inferior"): Add test.
2022-05-18store: Use a decaying cutoff in 'map/accumulate-builds'.Ludovic Courtès
This reduces the wall-clock time of: ./pre-inst-env guix system vm gnu/system/examples/desktop.tmpl -n from 2m13s to 53s (the timings depend on which derivations have already been built and are in store; in this case, many were missing). * guix/store.scm (default-cutoff): New variable. (map/accumulate-builds): Use it. Parameterize it in recursive calls to have decaying cutoff.
2022-05-18packages: Use separate package/graft cache.Ludovic Courtès
* guix/packages.scm (%package-graft-cache): New variable. (input-graft): Add (=> %package-graft-cache).
2022-05-18store: 'mcached' users can specify a cache ID.Ludovic Courtès
Users of 'mcached' can now specify a cache ID; furthermore, the cache hit rate is automatically recorded for all the caches accessed with 'mcached'. * guix/store.scm (%max-store-connection-caches) (%store-connection-cache-names): New variables. (recorder-for-cache): New procedure. (record-cache-lookup!): Add 'cache-id' parameter and rewrite in terms of 'recorder-for-cache'. (lookup-cached-object): Add 'cache-id' parameter and honor it. (%mcached): Add #:cache parameter and honor it. (mcached): Add '=>' keyword and corresponding clauses.
2022-05-17guix: cpu: Add detection for aarch64 CPUs.Efraim Flashner
* guix/cpu.scm (cpu->gcc-architecture): Add detection logic for aarch64 CPUs.
2022-05-17guix: cpu: Add support for reading armhf/aarch64 CPUs.Efraim Flashner
* guix/cpu.scm (current-cpu): Set flags at the beginning of the loop. Read from '/proc/cpuinfo' until the end of the file. Add match options for discovering armhf/aarch64 cpu configurations.
2022-05-13search-paths: Define $SSL_CERT_DIR and $SSL_CERT_FILE.Maxime Devos
For the ‘why’, see the docstring next to $SSL_CERT_DIR. In later commits, packages will be changed to use these variables and the variables will be added to more packages. * guix/search-paths.scm ($SSL_CERT_DIR, $SSL_CERT_FILE): New variables. * doc/guix.texi (Search Paths): Document them. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-12download: Add a mirror for CTAN.Maxim Cournoyer
* guix/download.scm (%mirrors)[ctan]: New entry.
2022-05-05transformations: Preserve transformation order in package property.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/54942>. Reported by SeerLite <seerlite@nixnet.email>. * guix/transformations.scm (options->transformation) [package-with-transformation-properties]: Add call to 'reverse'. * tests/transformations.scm ("options->transformation, property order"): New test.
2022-05-01Add (guix least-authority).Ludovic Courtès
* guix/least-authority.scm: New file. * Makefile.am (MODULES): Add it. * gnu/build/shepherd.scm (default-mounts): Make public.
2022-05-01gexp: Add 'references-file'.Ludovic Courtès
* gnu/services/base.scm (references-file): Remove. * guix/gexp.scm (references-file): New procedure. * tests/gexp.scm ("references-file"): New test.
2022-04-29guix system: Highlight search results.Ludovic Courtès
This is a followup to 5e0c3479759047311b6a518fd0bc512b232f201a. * guix/scripts/system/search.scm (guix-system-search): Pass #:regexps parameter to 'display-search-results'.
2022-04-29publish: Send uncached narinfo replies from the main thread.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/54723>. Reported by Guillaume Le Vaillant <glv@posteo.net>. Regression introduced in f743f2046be2c5a338ab871ae8666d8f6de7440b. With commit f743f2046be2c5a338ab871ae8666d8f6de7440b, responses to pipelined GETs would end up being written concurrently by many threads. Thus the body of those responses could be interleaved and garbled. * guix/scripts/publish.scm: Revert f743f2046be2c5a338ab871ae8666d8f6de7440b. * tests/publish.scm ("/*.narinfo pipeline"): New test.
2022-04-26scripts: pack: Fix typo.Alex Griffin
* guix/scripts/pack.scm (compressor-extenstion): Fix typo. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-04-23pack: Fix match error for multi-packages deb packs.Maxim Cournoyer
* guix/scripts/pack.scm: Remove duplicated copyright line. (debian-archive)[single-entry]: Match one or anything, not one or zero. Reported-by: jgart <jgart@dismail.de>
2022-04-20git-download: Set locale to deal with Unicode in git metadata.Attila Lendvai
Without this the git-fetch GEXP is run in an environment that uses ASCII character encoding when strings are crossing the Guile - C boundary. It means that e.g. tag names that have Unicode chars in them will cause problems, e.g. when walking and deleting the .git directory. An example in the wild: https://github.com/klauspost/pgzip/tags Fixes <https://issues.guix.gnu.org/54893>. * guix/git-download.scm (git-fetch): Call 'setenv' and 'setlocale' to set it to en_US.utf8. * gnu/packages/commencement.scm (glibc-utf8-locales-final): Make public. Add 'properties' field. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19ui: Highlight package and service search results.Ludovic Courtès
* guix/ui.scm (package->recutils): Add #:highlighting parameter and use it. (display-search-results): Add #:regexps parameter; call 'colorize-full-matches' and pass #:highlighting. * guix/scripts/package.scm (process-query): Pass #:regexps to 'display-search-results'. * guix/scripts/home.scm (search): Likewise. * guix/scripts/system/search.scm (service-type->recutils): Add #:highlighting parameter and use it.
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