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2016-03-09upstream: Fix 'signature-urls' coalescing....Previously, the resulting 'signature-urls' would contain N times the same URL. * guix/upstream.scm (coalesce-sources): Fix TWO in 'signature-urls'. * tests/upstream.scm: New file. * Makefile.am (SCM_TESTS): Add it. Ludovic Courtès
2016-03-08packages: Gracefully report packages not found....Fixes a thinko introduced in 1b846da8c372bee78851439fd9e72b2499115e5a that would lead to a backtrace when looking for an unknown package. * gnu/packages.scm (%find-package): Correct logic when checking for FALLBACK?. Ludovic Courtès
2016-03-08packages: Support the deprecated "NAME-VERSION" syntax....Fixes a typo introduced in 1b846da8c372bee78851439fd9e72b2499115e5a that would lead to a backtrace when using the deprecated syntax. * gnu/packages.scm (%find-package): Turn the first argument to 'call-with-values' into a thunk. Use #:select instead of '@' to select the right 'package-name->name+version' procedure. Ludovic Courtès
2016-03-06tests: Disable grafting by default for most tests....This allows tests to run as expected even in the presence of replacements among the bootstrap packages, such as Perl (commit d8173f21f7b4e3cb83541b8fa70621d2b6d4ce1c). * tests/cpan.scm: Add (%graft? #f). * tests/derivations.scm: Likewise. * tests/graph.scm: Likewise. * tests/monads.scm: Likewise. * tests/profiles.scm: Likewise. * tests/gexp.scm: Likewise. ("gexp->derivation vs. grafts"): Explicitly reenable grafting before, and disable it after, using 'set-grafting'. Ludovic Courtès
2016-03-05tests: Disable tests that would rebuild the world due to grafting....The Perl replacement added in d8173f2 leads some tests to involve grafting, which in turn triggers derivation builds that rebuild the world. Work around that. * tests/packages.scm: Add call to '%graft?'. ("package-derivation, direct graft") ("package-cross-derivation, direct graft"): Comment out. Ludovic Courtès
2016-03-05packages: The result of 'bag-grafts' does not contain duplicates....* guix/packages.scm (bag-grafts): Add call to 'delete-duplicates'. Ludovic Courtès
2016-03-05store: Add 'references/substitutes'....* guix/store.scm (references/substitutes): New procedure. * tests/store.scm ("references/substitutes missing reference info") ("references/substitutes with substitute info"): New tests. Ludovic Courtès
2016-03-03guix build: -S returns the replacement's source....Reported by Mark H Weaver. * guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are true, use the source of P's replacement. * tests/guix-build.sh: Add test. Ludovic Courtès
2016-03-02utils: Use '@' for separating package names and version numbers....This provides the ability to use numbers in package names. Fixes <http://bugs.gnu.org/19219>. * guix/utils.scm (package-name->name+version): New procedure. * gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument. Use the previous method when no package is found. (specification->package+output, specification->package): Adapt documentation to new syntax. * doc/guix.texi (Invoking guix package, Invoking guix import): Likewise. * guix/ui.scm (package-specification->name+version+output): Likewise. * guix/scripts/import/hackage.scm (show-help): Likewise. * tests/guix-build.sh: Adapt to new syntax. * tests/guix-lint.sh: Likewise. * tests/guix-package.sh: Likewise. * tests/ui.scm ("package-specification->name+version+output"): Likewise. * tests/utils.scm ("package-name->name+version"): Likewise. * NEWS: Mention new syntax. Mathieu Lirzin
2016-03-02tests: Disable grafts by default....Fixes <http://bugs.gnu.org/22872>. Reported by myglc2 <myglc2@gmail.com>. * test-env.in: Define and export 'GUIX_BUILD_OPTIONS'. * tests/guix-build.sh: When setting 'GUIX_BUILD_OPTIONS', make sure it contains '--no-grafts'. * tests/guix-package.sh: Likewise. * tests/guix-daemon.sh: Add (%graft? #f) in Scheme snippets. Ludovic Courtès
2016-03-01grafts: Graft recursively....Fixes <http://bugs.gnu.org/22139>. * guix/grafts.scm (graft-derivation): Rename to... (graft-derivation/shallow): ... this. (graft-origin-file-name, item->deriver, non-self-references) (cumulative-grafts, graft-derivation): New procedures * tests/grafts.scm ("graft-derivation, grafted item is a direct dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer to the grafted derivation. ("graft-derivation, grafted item is an indirect dependency") ("graft-derivation, no dependencies on grafted output"): New tests. * guix/packages.scm (input-graft): Change to take a package instead of an input. (input-cross-graft): Likewise. (fold-bag-dependencies): New procedure. (bag-grafts): Rewrite in terms of 'fold-bag-dependencies'. * tests/packages.scm ("package-derivation, indirect grafts"): Comment out. * doc/guix.texi (Security Updates): Mention run-time dependencies and recursive grafting. Ludovic Courtès
2016-02-27grafts: Consider all the outputs in the graft mapping....Before that, outputs of a derivation could be left referring to the ungrafted version of the derivation. * guix/grafts.scm (graft-derivation)[outputs]: Change to a list of name/file pairs. * guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable and use it when computing 'mapping'. Use 'mapping' directly. * tests/grafts.scm ("graft-derivation, multiple outputs"): New test. Ludovic Courtès
2016-02-26store: 'path-info-deriver' is #f when there is no deriver....* guix/store.scm (read-path-info): Use #f when we get the empty string for DERIVER. * guix/scripts/publish.scm (narinfo-string): Adjust accordingly. * tests/store.scm ("path-info-deriver"): New test. Ludovic Courtès
2016-02-25publish: Do not publish nars for invalid store items....Before that, /nar requests could succeed if the requested store item exists but is invalid (although such requests were unlikely because the corresponding narinfo request would have failed.) * guix/scripts/publish.scm (render-nar): Add 'store' parameter. Use 'valid-path?' instead of 'file-exists?'. (make-request-handler): Adjust 'render-nar' call accordingly. * tests/publish.scm ("/nar/invalid"): New test. Ludovic Courtès
2016-02-22grafts: 'name' parameter of 'graft-derivation' is now optional....* guix/grafts.scm (graft-derivation): Name 'name' a keyword parameter. * guix/packages.scm (package-derivation, package-cross-derivation): Adjust accordingly. * tests/grafts.scm ("graft-derivation"): Likewise. * tests/packages.scm ("package-derivation, indirect grafts"): Likewise. Ludovic Courtès
2016-02-22derivations: Move grafts to (guix grafts)....* guix/derivations.scm (<graft>, graft-derivation, %graft?) (set-grafting): Move to... * guix/grafts.scm: ... here. New file. * guix/gexp.scm, guix/packages.scm, tests/packages.scm, guix/scripts/build.scm: Use it. * Makefile.am (MODULES): Add it. (SCM_TESTS): Add tests/grafts.scm. * tests/derivations.scm ("graft-derivation"): Move to... * tests/grafts.scm: ... here. New file. Ludovic Courtès
2016-02-12scripts: environment: Build environments as profiles....Fixes <http://bugs.gnu.org/19816>. * guix/scripts/environment.scm (evaluate-input-search-paths) (build-inputs): Delete. (evaluate-profile-search-paths, strip-input-name) (package-or-package+output?, package-environment-inputs) (build-environment, inputs->profile-derivations): New procedures. (create-environment, show-search-paths, launch-environment) (launch-environment/container): Replace 'inputs' argument with 'profile' argument. (package+propagated-inputs): Strip off names off of input tuples. (options/resolve-packages): Handle input tuples that specify an output in expressions. (guix-environment): Convert inputs into a profile to use in the environment. Remove non-package inputs such as origins from environment inputs. * doc/guix.texi ("invoking guix environment"): Document package+output tuples for --expression option. * tests/guix-environment.sh: Update tests. * tests/guix-environment-container.sh: Likewise. Co-authored-by: Ludovic Courtès <ludo@gnu.org> David Thompson
2016-02-12store: Add monadic access to '%current-system'....* guix/store.scm (current-system, set-current-system): New procedures. * tests/store.scm ("current-system"): New test. Ludovic Courtès
2016-02-01guix build: Add '--with-input'....* guix/scripts/build.scm (transform-package-inputs): New procedure. (%transformations): Add it. (%transformation-options, show-transformation-options-help): Add --with-input. * tests/scripts-build.scm ("options->transformation, with-input"): ("options->transformation, with-input, no matches"): New tests. * tests/guix-build.sh: Add tests. * doc/guix.texi (Package Transformation Options): Document it. Ludovic Courtès
2016-02-01guix build: Transformations operate on single objects....* guix/scripts/build.scm (transform-package-source): Return a procedure that expects a single object rather than a list of packages. (options->transformation): Rewrite to precompute the list of applicable transformations and to return a procedure that expects a single object rather than a list of objects. (options->derivations): Adjust accordingly. * tests/scripts-build.scm: New file. * Makefile.am (SCM_TESTS): Add it. Ludovic Courtès
2016-01-29services: Rename 'dmd' services to 'shepherd'....* gnu/services/shepherd.scm (dmd-root-service-type, %dmd-root-service) (dmd-service-type, <dmd-service>, dmd-service, dmd-service?) (make-dmd-service, dmd-service-documentation, dmd-service-provision) (dmd-service-requirement, dmd-service-respawn, dmd-service-start) (dmd-service-stop, dmd-service-auto-start?, dmd-service-modules) (dmd-service-imported-modules, dmd-service-file-name, dmd-service-file) (dmd-service-back-edges): Rename to... (shepherd-root-service-type, %shepherd-root-service, shepherd-service-type) (<shepherd-service>, shepherd-service, shepherd-service?) (make-shepherd-service, shepherd-service-documentation) (shepherd-service-provision, shepherd-service-requirement) (shepherd-service-respawn, shepherd-service-start) (shepherd-service-stop, shepherd-service-auto-start?) (shepherd-service-modules, shepherd-service-imported-modules) (shepherd-service-file-name, shepherd-service-file) (shepherd-service-back-edges): ...this * gnu/services.scm: Adjust comments. * gnu/services/avahi.scm (avahi-dmd-service): Rename to... (avahi-shepherd-service): ... this. * gnu/services/base.scm (%root-file-system-dmd-service) (file-system->dmd-service-name, mapped-device->dmd-service-name) (dependency->dmd-service-name, file-system-dmd-service) (mingetty-dmd-service, nscd-dmd-service, guix-dmd-service) (guix-publish-dmd-service, udev-dmd-service, gpm-dmd-service): Rename to... (%root-file-system-shepherd-service) (file-system->shepherd-service-name, mapped-device->shepherd-service-name) (dependency->shepherd-service-name, file-system-shepherd-service) (mingetty-shepherd-service, nscd-shepherd-service, guix-shepherd-service) (guix-publish-shepherd-service, udev-shepherd-service) (gpm-shepherd-service): ... this. * gnu/services/databases.scm (postgresql-dmd-service): Rename to... (postgresql-shepherd-service): ... this. * gnu/services/desktop.scm (upower-dmd-service, elogind-dmd-service): Rename to... (upower-shepherd-service, elogind-shepherd-service): ... this. * gnu/services/dbus.scm (dbus-dmd-service): Rename to... (dbus-shepherd-service): ... this. * gnu/services/lirc.scm (lirc-dmd-service): Rename to... (lirc-shepherd-service): ... this. * gnu/services/mail.scm (dovecot-dmd-service): Rename to... (dovecot-shepherd-service): ... this. * gnu/services/networking.scm (ntp-dmd-service, tor-dmd-service) (bitlbee-dmd-service, wicd-dmd-service, network-manager-dmd-service): Rename to... (dbus-shepherd-service): ... this. * gnu/services/ssh.scm (lsh-dmd-service): Rename to... (lsh-shepherd-service): ... this. * gnu/services/web.scm (nginx-dmd-service): Rename to... (nginx-shepherd-service): ... this. * gnu/services/xorg.scm (slim-dmd-service): Rename to... (slim-shepherd-service): ... this. * gnu/system.scm (essential-services): Use '%shepherd-root-service'. * gnu/system/install.scm (cow-store-service-type): Adjust accordingly. * guix/scripts/system.scm (dmd-service-node-label, dmd-service-node-type) (export-dmd-graph): Likewise. * tests/guix-system.sh: Likewise. * tests/services.scm ("dmd-service-back-edges"): Rename to... ("shepherd-service-back-edges"): Adjust accordingly. * doc/guix.texi: Likewise. * doc/images/service-graph.dot: Use 'shepherd' service name. Alex Kost
2016-01-29Rename (gnu services dmd) to (gnu services shepherd)....* gnu/services/dmd.scm: Rename to... * gnu/services/shepherd.scm: ... this. * gnu/system.scm: Use it. * gnu/system/install.scm: Likewise. * gnu/services/xorg.scm: Likewise. * gnu/services/web.scm: Likewise. * gnu/services/ssh.scm: Likewise. * gnu/services/networking.scm: Likewise. * gnu/services/mail.scm: Likewise. * gnu/services/lirc.scm: Likewise. * gnu/services/desktop.scm: Likewise. * gnu/services/dbus.scm: Likewise. * gnu/services/databases.scm: Likewise. * gnu/services/base.scm: Likewise. * gnu/services/avahi.scm: Likewise. * guix/scripts/system.scm: Likewise. * tests/services.scm: Likewise. * tests/guix-system.sh: Likewise. * doc/guix.texi (Shepherd Services): Adjust accordingly. * gnu-system.am (GNU_SYSTEM_MODULES): Likewise. * po/guix/POTFILES.in: Likewise. Alex Kost
2016-01-28packages: Use '@' in package record printers....* guix/packages.scm <package>: Use '@' in record printer. * guix/import/cabal.scm <cabal-package>: Likewise * guix/import/elpa.scm <elpa-package>: Likewise. * tests/packages.scm: Adapt to it. Mathieu Lirzin
2016-01-28tests: Use 'dummy-origin' for lint tests when possible....* guix/tests/lint.scm ("patches: file names", "patches: not found"): Use 'dummy-origin'. 'sha256' field was wrongly set to a string instead of a bytevector. Mathieu Lirzin
2016-01-24Merge branch 'master' into core-updatesMark H Weaver
2016-01-22tests: Prevent 'http_proxy' from breaking Web server tests....* tests/lint.scm: Add call to 'unsetenv' to remove 'http_proxy'. * tests/publish.scm: Likewise. Ludovic Courtès
2016-01-22system: grub: Search root device by label or UUID if possible....Fixes <http://bugs.gnu.org/22281>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace 'search --file' command in the output with whatever 'grub-root-search' returns. (grub-root-search): New procedure. (grub-configuration-file): Add 'store-fs' parameter. Use 'grub-root-search' instead of hard-coded 'search --file' commands. * gnu/system.scm (store-file-system, operating-system-store-file-system): New procedures. (operating-system-grub.cfg): Use it, and adjust call to 'grub-configuration-file'. * tests/system.scm: New file. * Makefile.am (SCM_TESTS): Add it. Ludovic Courtès
2016-01-20tests: Move beatify-description tests to import-tests....Fixes <http://bugs.gnu.org/22391>. * tests/cran.scm (beautify-description: use double spacing, beautify-description: transform fragment into sentence). Move from here ... * tests/import-utils.scm: ... to here. New file. * Makefile.am (SCM_TESTS): Add import-utils. Ben Woodcroft
2016-01-20import: gem: Beautify only the description, not the synopsis....* guix/import/gem.scm (make-gem-sexp): Add synopsis argument. (gem->guix-package): Pass unbeautified synopsis to make-gem-sexp. * tests/gem.scm: Adapt it. Ben Woodcroft
2016-01-20import: Add Bioconductor importer and updater....* guix/import/cran.scm (%bioconductor-updater, latest-bioconductor-release, bioconductor-package?): New procedures. (cran->guix-package): Support repositories other than CRAN. (%bioconductor-url, %bioconductor-svn-url): New variables. (description->package): Update signature to distinguish between packages from different repositories. (latest-release): Rename procedure ... (latest-cran-release): ... to this. (cran-package?): Do not assume all R packages are available on CRAN. * tests/cran.scm: Update tests. * guix/scripts/import/cran.scm: Add "--archive" option and default to CRAN. * guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater". * doc/guix.texi: Document Bioconductor importer and updater. Ricardo Wurmus
2016-01-19derivations: Add test in keep-going mode....* tests/derivations.scm ("derivation fails but keep going"): New test. Ludovic Courtès
2016-01-19Merge branch 'master' into core-updatesMark H Weaver
2016-01-18derivations: Add test for #:leaked-env-vars....* tests/derivations.scm ("derivation #:leaked-env-vars"): New test. Ludovic Courtès
2016-01-13tests: Use sed instead of grep as a package with no dependencies....* tests/graph.scm ("node-edges"): Choose SED instead of GREP as the example. Ludovic Courtès
2016-01-06utils: Add 'ensure-keyword-arguments'....* guix/utils.scm (delkw, ensure-keyword-arguments): New procedures. * tests/utils.scm ("ensure-keyword-arguments"): New test. Ludovic Courtès
2016-01-05guix package: Allow multiple '--search' flags....* guix/scripts/package.scm (find-packages-by-description): Change 'rx' parameter to 'regexps'. [matches-all?, matches-one?]: New procedures. Use them. (process-query): Collect regexps from all 'search' queries, and pass them to 'find-packages-by-description'. * tests/guix-package.sh: Add tests. * doc/guix.texi (Invoking guix package): Document it. Ludovic Courtès
2016-01-02graph: %BAG-WITH-ORIGINS-NODE-TYPE includes the origin's guile....Before that it would include #f for most origins since that the default value of 'origin-patch-guile'. * guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile' returns #f, use (default-guile). * tests/graph.scm ("bag DAG, including origins"): Check for an edge from O to (default-guile). Ludovic Courtès
2016-01-02graph: %BAG-EMERGED-NODE-TYPE filters out origins....Fixes <http://bugs.gnu.org/22280>. Reported by Leo Famulari <leo@famulari.name>. * guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic %BAG-NODE-TYPE. This is a followup to 38b92da. Ludovic Courtès
2015-12-30guix build: Augment %PATCH-PATH when -L is passed....Fixes <http://bugs.gnu.org/22259>. Reported by Nikolay Merinov <nikolay.merinov@member.fsf.org>. * guix/scripts/build.scm (%standard-build-options) <-L>: Augment %PATCH-PATH. * tests/guix-package.sh: Add test. Ludovic Courtès
2015-12-20profiles: Honor search paths of propagated inputs....Fixes <http://bugs.gnu.org/22073>. Reported by Federico Beffa <beffa@ieee.org>. * guix/profiles.scm (package->manifest-entry): Use 'package-transitive-native-search-paths' when computing 'search-paths' field. * tests/profiles.scm ("package->manifest-entry, search paths"): New test. Ludovic Courtès
2015-12-20packages: Add 'package-transitive-native-search-paths'....* guix/packages.scm (package-transitive-native-search-paths): New procedure. * tests/packages.scm ("package-transitive-native-search-paths"): New test. Ludovic Courtès
2015-12-14gexp: 'local-file' resolves relative file names....* guix/gexp.scm (<local-file>): Rename constructor to '%%local-file'. Add 'absolute' field. (%local-file, extract-directory, absolute-file-name): New procedures. (current-source-directory): New macro. (local-file): Adjust call to '%local-file'. (local-file-absolute-file-name): New procedure. (local-file-compiler): Force the 'absolute' field. * tests/guix-system.sh: Test whether 'local-file' canonicalization works. * doc/guix.texi (G-Expressions): Adjust. Ludovic Courtès
2015-12-13graph: Add synthetic test....* tests/graph.scm ("node-transitive-edges, no duplicates"): New test. Ludovic Courtès
2015-12-11import: cran: Parse DESCRIPTION instead of HTML....* guix/import/cran.scm (description->alist, listify, beautify-description, description->package): New procedures. (table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove proceduces. (latest-release): Use parsed DESCRIPTION instead of SXML. * tests/cran.scm: Rewrite to match importer. Ricardo Wurmus
2015-12-09derivations: Determine what's built in 'check' mode....* guix/derivations.scm (substitution-oracle): Add #:mode parameter and honor it. (derivation-prerequisites-to-build): Likewise. [derivation-built?]: Take it into account. * guix/ui.scm (show-what-to-build): Add #:mode parameter. Pass it to 'substitute-oracle' and 'derivations-prerequisites-to-build'. * tests/derivations.scm ("derivation-prerequisites-to-build in 'check' mode"): New test. Ludovic Courtès
2015-12-08store: Allow clients to request multiple builds....* guix/store.scm (set-build-options): Add #:rounds parameter and honor it. * tests/store.scm ("build multiple times"): New test. Ludovic Courtès
2015-12-07gnu-maintenance: Add tests for 'release-file?'....* tests/gnu-maintenance.scm: New file. * Makefile.am (SCM_TESTS): Add it. * guix/gnu-maintenance.scm (release-file?): Export. Ludovic Courtès
2015-12-03store: Add mode parameter to 'build-paths'....* guix/store.scm (%protocol-version): Set minor to 15. (build-mode): New enumerate type. (build-things): Add 'mode' parameter; pass it to the RPC. * tests/store.scm ("build-things, check mode"): New check. Ludovic Courtès
2015-11-28lint: Do not report already-patched vulnerabilities....* guix/scripts/lint.scm (patch-file-name): New procedure. (check-vulnerabilities): Use it to filter out patched vulnerabilities. * tests/lint.scm ("cve: one patched vulnerability"): New test. Ludovic Courtès
2015-11-26lint: Add "cve" checker....Fixes <http://bugs.gnu.org/21289>. * guix/scripts/lint.scm (package-name->cpe-name, package-vulnerabilities) (check-vulnerabilities): New procedures. * guix/scripts/lint.scm (%checkers): Add "cve" checker. * tests/lint.scm ("cve", "cve: one vulnerability"): New tests. * doc/guix.texi (Invoking guix lint): Mention it. Ludovic Courtès