From 8a0b625a2d0006621cc90ce85cd1396ac2919b79 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 10 Feb 2023 19:41:54 +0100 Subject: gnu: scregseg: Update to 0.1.3. * gnu/packages/bioinformatics.scm (scregseg): Update to 0.1.3. [source]: Simplify snippet. [build-system]: Use pyproject-build-system. [arguments]: Add phases 'set-numba-cache-dir and 'build-extensions; enable tests. --- gnu/packages/bioinformatics.scm | 24 +++++++++++++++--------- 1 file changed, 15 insertions(+), 9 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ad8754f106..5717b4844e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17787,7 +17787,7 @@ populations.") (define-public scregseg (package (name "scregseg") - (version "0.1.1") + (version "0.1.3") (source (origin (method git-fetch) (uri (git-reference @@ -17796,16 +17796,22 @@ populations.") (file-name (git-file-name name version)) (sha256 (base32 - "1k8hllr5if6k2mm2zj391fv40sfc008cjm04l9vgfsdppb80i112")) + "07g2barywa1wi8mggbxkbxqjw1fzd0a0l9cjdbkx4s40imb1dbxb")) (snippet - #~(begin - (use-modules ((guix build utils))) - (delete-file "src/scregseg/_utils.c"))))) - (build-system python-build-system) + '(delete-file "src/scregseg/_utils.c")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #false ; tests require network access - #:phases - (modify-phases %standard-phases + (list + #:phases + '(modify-phases %standard-phases + ;; Numba needs a writable dir to cache functions. + (add-before 'check 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp"))) + ;; Cython extensions have to be built before running the tests. + (add-before 'check 'build-extensions + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace"))) (add-after 'unpack 'do-not-fail-to-find-sklearn (lambda _ ;; XXX: I have no idea why it cannot seem to find sklearn. -- cgit v1.2.3