From 9d0f794229faeb24801d30f20c5df47bc4a03041 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 25 Mar 2019 16:20:00 +0100 Subject: gnu: Add r-anota. * gnu/packages/bioconductor.scm (r-anota): New variable. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 78af3f5153..656a594d96 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2671,3 +2671,34 @@ have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters.") (license license:artistic2.0))) + +(define-public r-anota + (package + (name "r-anota") + (version "1.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "anota" version)) + (sha256 + (base32 + "182fp6dpws516y0igvwn6936higfqvy25haa0xs273f8aczr9cf0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-multtest" ,r-multtest) + ("r-qvalue" ,r-qvalue))) + (home-page "https://bioconductor.org/packages/anota/") + (synopsis "Analysis of translational activity") + (description + "Genome wide studies of translational control is emerging as a tool to +study verious biological conditions. The output from such analysis is both +the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively +involved in translation (the actively translating mRNA level) for each mRNA. +The standard analysis of such data strives towards identifying differential +translational between two or more sample classes - i.e. differences in +actively translated mRNA levels that are independent of underlying differences +in cytosolic mRNA levels. This package allows for such analysis using partial +variances and the random variance model. As 10s of thousands of mRNAs are +analyzed in parallell the library performs a number of tests to assure that +the data set is suitable for such analysis.") + (license license:gpl3))) -- cgit v1.2.3