From ff9d8420cf8bf0b0f0ceb4210966f821a0447858 Mon Sep 17 00:00:00 2001 From: Andreas Enge Date: Thu, 25 Jan 2024 14:41:30 +0100 Subject: gnu: python-flint: Update to 0.5.0 and build with flint@3. * gnu/packages/patches/python-flint-includes.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister file. * gnu/packages/algebra.scm (python-flint): Update to 0.5.0. [source]: Drop patch. [inputs]: Drop arb. [native-inputs]: Use python-cython-3. Change-Id: I5fa9b201efff76e16f957aee0ebcd453ea823e69 --- gnu/local.mk | 1 - gnu/packages/algebra.scm | 9 +- gnu/packages/patches/python-flint-includes.patch | 131 ----------------------- 3 files changed, 4 insertions(+), 137 deletions(-) delete mode 100644 gnu/packages/patches/python-flint-includes.patch diff --git a/gnu/local.mk b/gnu/local.mk index 9eac0cae1a..ab63bd5881 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1910,7 +1910,6 @@ dist_patch_DATA = \ %D%/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch \ %D%/packages/patches/python-pillow-CVE-2022-45199.patch \ %D%/packages/patches/python-pyfakefs-remove-bad-test.patch \ - %D%/packages/patches/python-flint-includes.patch \ %D%/packages/patches/python-libxml2-utf8.patch \ %D%/packages/patches/python-memcached-syntax-warnings.patch \ %D%/packages/patches/python-mox3-python3.6-compat.patch \ diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 43047a9b32..5fd8d0f106 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -494,7 +494,7 @@ real and complex numbers, with automatic, rigorous error control.") (define-public python-flint (package (name "python-flint") - (version "0.3.0") + (version "0.5.0") (source (origin (method git-fetch) (uri (git-reference @@ -503,15 +503,14 @@ real and complex numbers, with automatic, rigorous error control.") (file-name (git-file-name name version)) (sha256 (base32 - "1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw")) - (patches (search-patches "python-flint-includes.patch")))) + "10370kqik6q6vdqrqv3gbznsyaxbgqb3rbrff4alpw0sqr5s07c7")))) (build-system python-build-system) (native-inputs - (list python-cython)) + (list python-cython-3)) (propagated-inputs (list python-numpy)) (inputs - (list arb flint)) + (list flint)) (synopsis "Python module wrapping ARB and FLINT") (description "Python-flint is a Python extension module wrapping FLINT diff --git a/gnu/packages/patches/python-flint-includes.patch b/gnu/packages/patches/python-flint-includes.patch deleted file mode 100644 index c0cfe94a04..0000000000 --- a/gnu/packages/patches/python-flint-includes.patch +++ /dev/null @@ -1,131 +0,0 @@ -The following patch, authored by Andreas Enge, looks for the flint include -files in the correct subdirectory. - -diff -u -r python-flint-old/src/flint.pxd python-flint-new/src/flint.pxd ---- python-flint-old/src/flint.pxd 2019-03-19 10:26:11.055748626 +0100 -+++ python-flint-new/src/flint.pxd 2019-03-19 10:35:23.269341203 +0100 -@@ -27,7 +27,7 @@ - - ctypedef long fmpz_struct - --cdef extern from "flint.h": -+cdef extern from "flint/flint.h": - ctypedef void * flint_rand_t - void flint_randinit(flint_rand_t state) - void flint_randclear(flint_rand_t state) -@@ -35,7 +35,7 @@ - long flint_get_num_threads() - void flint_cleanup() - --cdef extern from "nmod_vec.h": -+cdef extern from "flint/nmod_vec.h": - ctypedef struct nmod_t: - mp_limb_t n - mp_limb_t ninv -@@ -47,7 +47,7 @@ - mp_limb_t nmod_mul(mp_limb_t a, mp_limb_t b, nmod_t mod) - mp_limb_t nmod_div(mp_limb_t a, mp_limb_t b, nmod_t mod) - --cdef extern from "nmod_poly.h": -+cdef extern from "flint/nmod_poly.h": - ctypedef struct nmod_poly_struct: - mp_ptr coeffs - long alloc -@@ -129,7 +129,7 @@ - void nmod_poly_factor_init(nmod_poly_factor_t fac) - void nmod_poly_factor_clear(nmod_poly_factor_t fac) - --cdef extern from "nmod_mat.h": -+cdef extern from "flint/nmod_mat.h": - ctypedef struct nmod_mat_struct: - mp_limb_t * entries - long r -@@ -178,7 +178,7 @@ - long nmod_mat_rref(nmod_mat_t A) - long nmod_mat_nullspace(nmod_mat_t X, nmod_mat_t A) - --cdef extern from "fmpz.h": -+cdef extern from "flint/fmpz.h": - ctypedef fmpz_struct fmpz_t[1] - int COEFF_IS_MPZ(fmpz_struct v) - void fmpz_init(fmpz_t op) -@@ -268,7 +268,7 @@ - void fmpz_rfac_uiui(fmpz_t r, ulong x, ulong n) - void fmpz_primorial(fmpz_t res, ulong n) - --cdef extern from "fmpz_factor.h": -+cdef extern from "flint/fmpz_factor.h": - ctypedef struct fmpz_factor_struct: - int sign - fmpz_struct * p -@@ -280,7 +280,7 @@ - void fmpz_factor_clear(fmpz_factor_t factor) - void fmpz_factor(fmpz_factor_t factor, fmpz_t n) - --cdef extern from "fmpz_poly.h": -+cdef extern from "flint/fmpz_poly.h": - ctypedef struct fmpz_poly_struct: - fmpz_struct * coeffs - long alloc -@@ -390,14 +390,14 @@ - void fmpz_poly_cos_minpoly(fmpz_poly_t, ulong) - void fmpz_poly_swinnerton_dyer(fmpz_poly_t, ulong) - --cdef extern from "fmpz_poly_factor.h": -+cdef extern from "flint/fmpz_poly_factor.h": - void fmpz_poly_factor_init(fmpz_poly_factor_t fac) - void fmpz_poly_factor_clear(fmpz_poly_factor_t fac) - void fmpz_poly_factor_zassenhaus(fmpz_poly_factor_t fac, fmpz_poly_t G) - void fmpz_poly_factor(fmpz_poly_factor_t fac, fmpz_poly_t G) - void fmpz_poly_factor_squarefree(fmpz_poly_factor_t fac, fmpz_poly_t G) - --cdef extern from "fmpz_mat.h": -+cdef extern from "flint/fmpz_mat.h": - ctypedef struct fmpz_mat_struct: - fmpz_struct * entries - long r -@@ -448,7 +448,7 @@ - void fmpz_mat_snf(fmpz_mat_t S, const fmpz_mat_t A) - int fmpz_mat_is_in_snf(const fmpz_mat_t A) - --cdef extern from "fmpz_lll.h": -+cdef extern from "flint/fmpz_lll.h": - ctypedef struct fmpz_lll_struct: - double delta - double eta -@@ -461,7 +461,7 @@ - void fmpz_lll(fmpz_mat_t B, fmpz_mat_t U, const fmpz_lll_t fl) - - --cdef extern from "fmpq.h": -+cdef extern from "flint/fmpq.h": - ctypedef struct fmpq_struct: - fmpz_struct num - fmpz_struct den -@@ -506,7 +506,7 @@ - void fmpq_next_signed_minimal(fmpq_t res, fmpq_t x) - void fmpq_harmonic_ui(fmpq_t res, ulong n) - --cdef extern from "fmpq_poly.h": -+cdef extern from "flint/fmpq_poly.h": - ctypedef struct fmpq_poly_struct: - fmpz_struct * coeffs - fmpz_t den -@@ -620,7 +620,7 @@ - void fmpq_poly_compose_series(fmpq_poly_t res, fmpq_poly_t poly1, fmpq_poly_t poly2, long n) - void fmpq_poly_revert_series(fmpq_poly_t res, fmpq_poly_t poly1, long n) - --cdef extern from "fmpq_mat.h": -+cdef extern from "flint/fmpq_mat.h": - ctypedef struct fmpq_mat_struct: - fmpq_struct * entries - long r -@@ -672,7 +672,7 @@ - long fmpq_mat_rref(fmpq_mat_t B, fmpq_mat_t A) - void fmpq_mat_transpose(fmpq_mat_t B, fmpq_mat_t A) - --cdef extern from "arith.h": -+cdef extern from "flint/arith.h": - void arith_number_of_partitions(fmpz_t res, ulong n) - int arith_moebius_mu(fmpz_t n) - void arith_divisor_sigma(fmpz_t v, fmpz_t n, ulong k) -- cgit v1.2.3