From d56df35a259dd1faea7780f4ceff84a9c96c699b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:42:39 +0100 Subject: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f08e1a87c4..7079092335 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.") based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-hs-eg-db + (package + (name "r-org-hs-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Hs.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim")))) + (properties + `((upstream-name . "org.Hs.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/") + (synopsis "Genome wide annotation for Human") + (description + "This package contains genome-wide annotations for Human, primarily based +on mapping using Entrez Gene identifiers.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19 (package (name "r-bsgenome-hsapiens-ucsc-hg19") -- cgit v1.2.3