From 0b5b41c5614be969e611f3dc3e1462eb8135b3e8 Mon Sep 17 00:00:00 2001 From: zimoun Date: Fri, 21 May 2021 22:25:58 +0200 Subject: gnu: r-genomicfiles: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here... * gnu/packages/bioconductor.scm (r-genomicfiles): ...to here. --- gnu/packages/bioinformatics.scm | 34 ---------------------------------- 1 file changed, 34 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a57c420a07..38f3298c23 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9168,40 +9168,6 @@ their variance is independent of the mean, and they are usually more sensitive and specific in detecting differential transcription.") (license license:artistic2.0))) -(define-public r-genomicfiles - (package - (name "r-genomicfiles") - (version "1.26.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "GenomicFiles" version)) - (sha256 - (base32 - "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz")))) - (properties `((upstream-name . "GenomicFiles"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-biocparallel" ,r-biocparallel) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-matrixgenerics" ,r-matrixgenerics) - ("r-rsamtools" ,r-rsamtools) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) - (home-page "https://bioconductor.org/packages/GenomicFiles") - (synopsis "Distributed computing by file or by range") - (description - "This package provides infrastructure for parallel computations -distributed by file or by range. User defined mapper and reducer functions -provide added flexibility for data combination and manipulation.") - (license license:artistic2.0))) - (define-public r-dirichletmultinomial (package (name "r-dirichletmultinomial") -- cgit v1.2.3