From b4f5ec676005a01e47ace652ba722f8f1d5d2ec5 Mon Sep 17 00:00:00 2001 From: Kyle Andrews Date: Sat, 1 Apr 2023 04:57:00 +0000 Subject: gnu: Add r-targets. * gnu/packages/cran.scm (r-targets): New variable., Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 37 ------------------------------------- 1 file changed, 37 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c631bdccd..6eb5a99343 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14457,43 +14457,6 @@ equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.") (license license:gpl3+))) -(define-public r-tarchetypes - (package - (name "r-tarchetypes") - (version "0.7.5") - (source (origin - (method url-fetch) - (uri (cran-uri "tarchetypes" version)) - (sha256 - (base32 - "05yhq8xnrpk37x7fq0yjw4m527ji28s16dskfmljrbrzb064nw2g")))) - (properties `((upstream-name . "tarchetypes"))) - (build-system r-build-system) - (propagated-inputs (list r-digest - r-dplyr - r-fs - r-furrr - r-future - r-future-callr - r-rlang - r-targets - r-tibble - r-tidyselect - r-vctrs - r-withr)) - (home-page "https://docs.ropensci.org/tarchetypes/") - (synopsis "Archetypes for Targets") - (description - "Function-oriented Make-like declarative pipelines for statistics and -data science are supported in the targets R package. As an extension to -targets, the tarchetypes package provides convenient user-side functions to -make targets easier to use. By establishing reusable archetypes for common -kinds of targets and pipelines, these functions help express complicated -reproducible pipelines concisely and compactly. The methods in this package -were influenced by the drake R package by Will Landau (2018) -.") - (license license:expat))) - (define-public r-targets (package (name "r-targets") -- cgit v1.2.3 From 4e9c9a63cc6e51b9755dbe2845bdb6fb8d3abce0 Mon Sep 17 00:00:00 2001 From: Kyle Andrews Date: Sat, 1 Apr 2023 04:57:02 +0000 Subject: gnu: Add r-tarchetypes. * gnu/packages/cran.scm (r-tarchetypes): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6eb5a99343..8c631bdccd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14457,6 +14457,43 @@ equations, and Cox proportional hazards models. Functions are available to handle data from simple random samples as well as complex surveys.") (license license:gpl3+))) +(define-public r-tarchetypes + (package + (name "r-tarchetypes") + (version "0.7.5") + (source (origin + (method url-fetch) + (uri (cran-uri "tarchetypes" version)) + (sha256 + (base32 + "05yhq8xnrpk37x7fq0yjw4m527ji28s16dskfmljrbrzb064nw2g")))) + (properties `((upstream-name . "tarchetypes"))) + (build-system r-build-system) + (propagated-inputs (list r-digest + r-dplyr + r-fs + r-furrr + r-future + r-future-callr + r-rlang + r-targets + r-tibble + r-tidyselect + r-vctrs + r-withr)) + (home-page "https://docs.ropensci.org/tarchetypes/") + (synopsis "Archetypes for Targets") + (description + "Function-oriented Make-like declarative pipelines for statistics and +data science are supported in the targets R package. As an extension to +targets, the tarchetypes package provides convenient user-side functions to +make targets easier to use. By establishing reusable archetypes for common +kinds of targets and pipelines, these functions help express complicated +reproducible pipelines concisely and compactly. The methods in this package +were influenced by the drake R package by Will Landau (2018) +.") + (license license:expat))) + (define-public r-targets (package (name "r-targets") -- cgit v1.2.3 From 96f3c7504a68ee0df1f7f4a74616dc0f0a7d9016 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 16 Apr 2023 18:20:40 +0200 Subject: gnu: Add r-writexls. * gnu/packages/cran.scm (r-writexls): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c631bdccd..46b046c83b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12635,6 +12635,29 @@ documents.") libxlsxwriter.") (license license:bsd-2))) +(define-public r-writexls + (package + (name "r-writexls") + (version "6.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "WriteXLS" version)) + (sha256 + (base32 + "1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4")))) + (properties `((upstream-name . "WriteXLS"))) + (build-system r-build-system) + (inputs (list perl)) + (home-page "https://github.com/marcschwartz/WriteXLS") + (synopsis "Create Excel 2003 (XLS) and Excel 2007 (XLSX) files") + (description + "This package provides a cross-platform Perl-based R function to create +Excel 2003 (XLS) and Excel 2007 (XLSX) files from one or more data frames. +Each data frame will be written to a separate named worksheet in the Excel +spreadsheet. The worksheet name will be the name of the data frame it +contains or can be specified by the user.") + (license license:gpl2+))) + (define-public r-biasedurn (package (name "r-biasedurn") -- cgit v1.2.3 From 0ef30039bb4459ea0b0e7f4e9742178a37f1d7c8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:09:45 +0200 Subject: gnu: r-torch: Update to 0.10.0. * gnu/packages/cran.scm (r-torch): Update to 0.10.0. [propagated-inputs]: Add r-desc. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 46b046c83b..540ae61894 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -27812,13 +27812,13 @@ Visualizations are also available for most of these settings.") (define-public r-torch (package (name "r-torch") - (version "0.9.1") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "torch" version)) (sha256 - (base32 "03qbdws6j5v2vmdgdnwfd0248s2qirnxpm9v4302vqlq3c0i83c2")))) + (base32 "1ydazl7v10vm69573y871rq1dvbgdvlvhcs6di7xw7i4z4kg2gxm")))) (properties `((upstream-name . "torch"))) (build-system r-build-system) (arguments @@ -27849,6 +27849,7 @@ Visualizations are also available for most of these settings.") r-callr r-cli r-coro + r-desc r-ellipsis r-glue r-magrittr -- cgit v1.2.3 From aa24b1c17cf7bfbc20aab5f75e43fd73714c5f76 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:32 +0200 Subject: gnu: r-v8: Update to 4.3.0. * gnu/packages/cran.scm (r-v8): Update to 4.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 540ae61894..44e5af838c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1409,14 +1409,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.2.2") + (version "4.3.0") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah")))) + "1l70vdqcagp9cdyxa231gk33z5blsg96j0l28zbaklnhmr7mqfby")))) (properties `((upstream-name . "V8"))) (build-system r-build-system) (arguments -- cgit v1.2.3 From 832d7a8908e7be5191200a20a94a71f124dffca5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-zoo: Update to 1.8-12. * gnu/packages/cran.scm (r-zoo): Update to 1.8-12. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 44e5af838c..fac42e9dc7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1712,13 +1712,13 @@ proposals for count data.") (define-public r-zoo (package (name "r-zoo") - (version "1.8-11") + (version "1.8-12") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "19cw09bhwj2qyd72765ym1cm2wmhh801ccif889nzq5gfpw513l4")))) + "1f1g7f362sidh99n2pcgnj8iwsn7hnjgpdnkrqml5qzrd0k8dhz6")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) -- cgit v1.2.3 From 5df24ec454825cb6369442ac82544a386e45fa7d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-partykit: Update to 1.2-20. * gnu/packages/cran.scm (r-partykit): Update to 1.2-20. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fac42e9dc7..3eec3876a3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5186,13 +5186,13 @@ initiative to bring PASSTEC 2000 functionalities to R.") (define-public r-partykit (package (name "r-partykit") - (version "1.2-19") + (version "1.2-20") (source (origin (method url-fetch) (uri (cran-uri "partykit" version)) (sha256 (base32 - "0ma3haanf5pkj8r8q3bd0ig3zq9ppfjhhfkh6v50m82z6fprm3p4")))) + "1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33")))) (build-system r-build-system) (propagated-inputs (list r-formula -- cgit v1.2.3 From 1127830d3a0a124dc77b554fc2788fc4ff5761cd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-jomo: Update to 2.7-6. * gnu/packages/cran.scm (r-jomo): Update to 2.7-6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3eec3876a3..38809c6da2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7801,14 +7801,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.7-5") + (version "2.7-6") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "05xfkj65nqd987pp5bhl4jy46qxwjll5mxnjii6qrmfmjld177q5")))) + "1np2sw0kq21kdhkv227pz2rqvpxg06r3mk93ggkrz5nl45ajmyiz")))) (build-system r-build-system) (propagated-inputs (list r-lme4 r-mass r-ordinal r-survival r-tibble)) -- cgit v1.2.3 From d9cef2c152d36e88142c0d5aecb8b7f59a982cbf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-quantmod: Update to 0.4.22. * gnu/packages/cran.scm (r-quantmod): Update to 0.4.22. [propagated-inputs]: Add r-jsonlite. --- gnu/packages/cran.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 38809c6da2..101663aef7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9499,17 +9499,17 @@ Fisher's method), and Sidak correction.") (define-public r-quantmod (package (name "r-quantmod") - (version "0.4.21") + (version "0.4.22") (source (origin (method url-fetch) (uri (cran-uri "quantmod" version)) (sha256 (base32 - "1qmpdk91smiqg63h4jsrw4izl4pnbgwlzi16zjvin0fs29kx01jf")))) + "0pknwssha01hjsf3c7lgrabk2c3rzq5wa2m7mf8sz7wsrbqrd57j")))) (build-system r-build-system) (propagated-inputs - (list r-curl r-ttr r-xts r-zoo)) + (list r-curl r-jsonlite r-ttr r-xts r-zoo)) (home-page "https://cran.r-project.org/web/packages/quantmod/") (synopsis "Quantitative financial modelling framework") (description "This package provides a quantitative financial modelling -- cgit v1.2.3 From f31eb37d5b40b8150e0c82fa81357248fb3add49 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-renv: Update to 0.17.3. * gnu/packages/cran.scm (r-renv): Update to 0.17.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 101663aef7..f1bce6f546 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11401,14 +11401,14 @@ those searches and pull data into their R sessions.") (define-public r-renv (package (name "r-renv") - (version "0.17.2") + (version "0.17.3") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "1qar7s3zdnhqsi6am6f58wg3ygpwv73qmrcp36glz0galzigc0y2")))) + "1w7mwk3drf3bzfyhsy6mlnpbhgp8il8is7q95ad567ry4g6jhkqw")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs -- cgit v1.2.3 From b0d707eda62f204a66a9fc6f555c23a86d14c62b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-labelled: Update to 2.11.0. * gnu/packages/cran.scm (r-labelled): Update to 2.11.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f1bce6f546..4f66e4329c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13680,14 +13680,14 @@ subsequence} (LCS) using a dynamic programming algorithm.") (define-public r-labelled (package (name "r-labelled") - (version "2.10.0") + (version "2.11.0") (source (origin (method url-fetch) (uri (cran-uri "labelled" version)) (sha256 (base32 - "02n4r4bizsysnlmxpw86w7zkiqi6aill9dq2nmrn43xzrffy54sy")))) + "1pg5l2c3ai8gkrqryq5xzsal85pljmdzc2ln8k1ak3j4racm5p7d")))) (properties `((upstream-name . "labelled"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 367ea059e9e952b63cdcf8110c1dacc8543b8fcb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-ggformula: Update to 0.10.4. * gnu/packages/cran.scm (r-ggformula): Update to 0.10.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4f66e4329c..a5bda55790 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13711,13 +13711,13 @@ haven package.") (define-public r-ggformula (package (name "r-ggformula") - (version "0.10.2") + (version "0.10.4") (source (origin (method url-fetch) (uri (cran-uri "ggformula" version)) (sha256 - (base32 "0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl")))) + (base32 "07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj")))) (build-system r-build-system) (propagated-inputs (list r-ggforce -- cgit v1.2.3 From 2a1de6dc139f82aac10c1aa4032d517034f03379 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:33 +0200 Subject: gnu: r-multcompview: Update to 0.1-9. * gnu/packages/cran.scm (r-multcompview): Update to 0.1-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a5bda55790..0ad1f7005c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14894,13 +14894,13 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-multcompview (package (name "r-multcompview") - (version "0.1-8") + (version "0.1-9") (source (origin (method url-fetch) (uri (cran-uri "multcompView" version)) (sha256 - (base32 "1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j")))) + (base32 "15vki166n2k4ng72hy62c2mzz18s10h6l6w839qplg0zsplr6f8z")))) (properties `((upstream-name . "multcompView"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=multcompView") -- cgit v1.2.3 From 726b352cec68731d8b8360e6d18cef6eee724135 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-bayestestr: Update to 0.13.1. * gnu/packages/cran.scm (r-bayestestr): Update to 0.13.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0ad1f7005c..8a7de602cc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15148,14 +15148,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.13.0") + (version "0.13.1") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "1951zm88qlbmr4ragrzfzgw72awm7mqhh464s6kck0mcx7shas90")))) + "0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 51ae3aabee6785450d1a815eeabbb857a1dab68d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-performance: Update to 0.10.3. * gnu/packages/cran.scm (r-performance): Update to 0.10.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8a7de602cc..c49bb5888e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15175,14 +15175,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.10.2") + (version "0.10.3") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "0r9x5pqf1asf0sy0255jv0d4cki4xd5sfp5rl9mldclykpswf022")))) + "1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) -- cgit v1.2.3 From 39d2ed401f72f5585ed0ce8131a53e5e5c6f4ebe Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-gargle: Update to 1.4.0. * gnu/packages/cran.scm (r-gargle): Update to 1.4.0. [propagated-inputs]: Remove r-rstudioapi. --- gnu/packages/cran.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c49bb5888e..a5f349e81e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18037,14 +18037,14 @@ and manipulating sets of ontological terms.") (define-public r-gargle (package (name "r-gargle") - (version "1.3.0") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "gargle" version)) (sha256 (base32 - "02ldshm8phs1ls0djqfprv5yy8i50ijh16y7smkb61wrwd4zr3s2")))) + "12s980jfw98czzrxdn83b2blj4qcrkqqmycjplkzvm4mapgiw3wf")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -18056,7 +18056,6 @@ and manipulating sets of ontological terms.") r-openssl r-rappdirs r-rlang - r-rstudioapi r-withr)) (native-inputs (list r-knitr)) -- cgit v1.2.3 From b9d6b88a33d6dc602efa006b793d9501fd52608c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-compositions: Update to 2.0-6. * gnu/packages/cran.scm (r-compositions): Update to 2.0-6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a5f349e81e..200b1ae5ee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19793,14 +19793,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "2.0-5") + (version "2.0-6") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "0niccv8i3jrcjnjm7dygzhz6bfah9za6lswa669pfpgsycilpf51")))) + "0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5")))) (build-system r-build-system) (propagated-inputs (list r-bayesm r-mass r-robustbase r-tensora)) -- cgit v1.2.3 From 185bb03286bf6e87a676430a480c2bc3f146fb97 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-rms: Update to 6.6-0. * gnu/packages/cran.scm (r-rms): Update to 6.6-0. [propagated-inputs]: Remove r-lattice; add r-kableextra and r-knitr. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 200b1ae5ee..efbd03f694 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21271,13 +21271,13 @@ lspec, polyclass, and polymars.") (define-public r-rms (package (name "r-rms") - (version "6.5-0") + (version "6.6-0") (source (origin (method url-fetch) (uri (cran-uri "rms" version)) (sha256 - (base32 "11dibpjgbhlqzn97254hlp6p6wfld7bnw4j5rr0dqwynj6fq2vzx")))) + (base32 "0p32nqb4pj8dddi4dwjbr59wp6q6vvmarq97vpdaxwrr8fwsvazk")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -21287,7 +21287,8 @@ lspec, polyclass, and polymars.") r-hmisc r-htmltable r-htmltools - r-lattice + r-kableextra + r-knitr r-mass r-multcomp r-nlme -- cgit v1.2.3 From 776154da00894138d171aeaa261103b68c7ec15f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-scs: Update to 3.2.4. * gnu/packages/cran.scm (r-scs): Update to 3.2.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index efbd03f694..3209097db4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23497,13 +23497,13 @@ the graph, and propagating graph labels.") (define-public r-scs (package (name "r-scs") - (version "3.0-1") + (version "3.2.4") (source (origin (method url-fetch) (uri (cran-uri "scs" version)) (sha256 (base32 - "04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n")))) + "13r944b9ip078hqwdpzn3jv21zm47d9l2b1f5y6glcj5pxs9iwy3")))) (properties `((upstream-name . "scs"))) (build-system r-build-system) (home-page "https://github.com/FlorianSchwendinger/scs") -- cgit v1.2.3 From b039d0a7c4fcf8388054a443b7c2373bfecd4f91 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:34 +0200 Subject: gnu: r-enrichr: Update to 3.2. * gnu/packages/cran.scm (r-enrichr): Update to 3.2. [propagated-inputs]: Add r-writexls. --- gnu/packages/cran.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3209097db4..3f48e74e7e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23901,18 +23901,18 @@ and model output.") (define-public r-enrichr (package (name "r-enrichr") - (version "3.1") + (version "3.2") (source (origin (method url-fetch) (uri (cran-uri "enrichR" version)) (sha256 (base32 - "0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9")))) + "1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1")))) (properties `((upstream-name . "enrichR"))) (build-system r-build-system) (propagated-inputs - (list r-curl r-ggplot2 r-httr r-rjson)) + (list r-curl r-ggplot2 r-httr r-rjson r-writexls)) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/enrichR/") -- cgit v1.2.3 From 6655a2af0f274534e0b8a07f95ca12066ee2b3f0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-terra: Update to 1.7-23. * gnu/packages/cran.scm (r-terra): Update to 1.7-23. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3f48e74e7e..8b1b4777f0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24831,14 +24831,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.7-18") + (version "1.7-23") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "0ipavj170yzp88dvbka6a0y683qn78dj7chr1ym1ghncrqkmk0fn")))) + "1xri4cxvkpdyxvm1cv6dypyv0ww9al99vmrhzhscvwj7xycckabg")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 374639c34ab35da5c3669dc47e4e2bb08a2ceb9d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-qqconf: Update to 1.3.2. * gnu/packages/cran.scm (r-qqconf): Update to 1.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8b1b4777f0..8edab9a8bc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -28244,13 +28244,13 @@ finding peaks in spectra, converting humidity measures.") (define-public r-qqconf (package (name "r-qqconf") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "qqconf" version)) (sha256 (base32 - "1vvw79l8nqpqvmfpff5khgdjbs1s2q5ylg72lvkihd2qfk0d8cf5")))) + "18wfvljd6gbf9am3hh14fgp06gpa04vw9nhl7q07li7rmlkxc1cl")))) (properties `((upstream-name . "qqconf"))) (build-system r-build-system) (inputs (list fftw)) -- cgit v1.2.3 From d8e3aa95a05ff4025f41d3dca15bb46aa95ce0a3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-quanteda: Update to 3.3.0. * gnu/packages/cran.scm (r-quanteda): Update to 3.3.0. [propagated-inputs]: Add r-jsonlite. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8edab9a8bc..34e557e274 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -29004,18 +29004,19 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "3.2.4") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62")))) + "19b36r1fd493mfcjp58fd986kgyhd2q396il8gb1cpa5cfpny983")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs (list r-fastmatch + r-jsonlite r-magrittr r-matrix r-rcpp -- cgit v1.2.3 From 3113ee8bbae7aa1cbf11cf68f221586b48a3f082 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-rstanarm: Update to 2.21.4. * gnu/packages/cran.scm (r-rstanarm): Update to 2.21.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 34e557e274..f6edf16eb7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -30122,14 +30122,14 @@ need to derive the partial derivatives.") (define-public r-rstanarm (package (name "r-rstanarm") - (version "2.21.3") + (version "2.21.4") (source (origin (method url-fetch) (uri (cran-uri "rstanarm" version)) (sha256 (base32 - "19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9")))) + "11diz486ak31zx5402kra3s6nd76cvnla8frfn0kc7dzwhiwcspc")))) (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 679c78ed51a918157a180e924b3ea209da833eb0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-spatstat-linnet: Update to 3.1-0. * gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f6edf16eb7..9cc1492f23 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -32087,14 +32087,14 @@ user-level code from spatstat, except for the code for linear networks.") (define-public r-spatstat-linnet (package (name "r-spatstat-linnet") - (version "3.0-6") + (version "3.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.linnet" version)) (sha256 (base32 - "0sk0zg4fhy3pryi06i0lvhkrgh47r3h4jxw231i8n5mzng1x828n")))) + "037hggsd9wmiwlxc8wjabzsiqlk5gf6mflm87pps370nmxkavc5r")))) (properties `((upstream-name . "spatstat.linnet"))) (build-system r-build-system) -- cgit v1.2.3 From 075a045b41195302ec44b273c21f1d7f6844a412 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-confintr: Update to 1.0.0. * gnu/packages/cran.scm (r-confintr): Update to 1.0.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9cc1492f23..56d72eb01b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -32897,13 +32897,13 @@ value.") (define-public r-confintr (package (name "r-confintr") - (version "0.2.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "confintr" version)) (sha256 (base32 - "1zpprv5ysmnqn83xdsixsm6jhsi1gck32z6x60gp0y8xs25mwcbg")))) + "15vsdbqj5w4qbk7kwp1jqyc3phmmy8s981xjj0n0yy48xhy37f8g")))) (properties `((upstream-name . "confintr"))) (build-system r-build-system) (propagated-inputs (list r-boot)) -- cgit v1.2.3 From d495c46698bd5070f4268601436fc9bab21ce60f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:35 +0200 Subject: gnu: r-igraph: Update to 1.4.2. * gnu/packages/cran.scm (r-igraph): Update to 1.4.2. [propagated-inputs]: Add r-cpp11. --- gnu/packages/cran.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 56d72eb01b..4d593aaaff 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33003,21 +33003,21 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1waxa15ng4lqr07s68br81ihdnxy5dnx8iygyzkwnyz8dbs5i8h8")))) + "1raaih254dcd19d4sqmb8w8ih5plbvik11nsr9q68nm2n6nh0lvx")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) (inputs (list gmp glpk libxml2 zlib)) (propagated-inputs - (list r-magrittr r-matrix r-pkgconfig r-rlang)) + (list r-cpp11 r-magrittr r-matrix r-pkgconfig r-rlang)) (home-page "https://igraph.org") (synopsis "Network analysis and visualization") (description -- cgit v1.2.3 From d2d6ea993e703e5a12736ba189036520c34a62da Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:36 +0200 Subject: gnu: r-tune: Update to 1.1.1. * gnu/packages/cran.scm (r-tune): Update to 1.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4d593aaaff..83a5b0249c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33343,14 +33343,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "1pp3pgxwpqihxfjwf9mb5rc0yv60q47n7z399z21zp4jbwryxymh")))) + "0kl8bpd1i5ir6lrx055rilvb7kg0iws5f4618956h3g8sif1lvmg")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 648f92a434f9d9c42d7b01821f8714ee45f97964 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:36 +0200 Subject: gnu: r-workflowsets: Update to 1.0.1. * gnu/packages/cran.scm (r-workflowsets): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83a5b0249c..ae7a830f1a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33388,14 +33388,14 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq")))) + "1rv82lx1vmhjqlim7y5vpfsa7mb6msvkhiz17hxr5k9244ykmbhi")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 853fd0f2c3122c45ce47c21ed9105eb2a7243fab Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:36 +0200 Subject: gnu: r-parsnip: Update to 1.1.0. * gnu/packages/cran.scm (r-parsnip): Update to 1.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ae7a830f1a..2671d09e2b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33667,14 +33667,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "1.0.4") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "1305z2pamxxaqy0qylb8vq6ixs934kfc9h2si2fdy7q5wjpdjnjh")))) + "13bp44i8i99yiahdjikf0xidfgxd251nhbxsnsw0ax1lv24fpggc")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 68355cf37b167fefb99c4a8f1eb5d5b0fb8d13d8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:36 +0200 Subject: gnu: r-seqminer: Update to 8.9. * gnu/packages/cran.scm (r-seqminer): Update to 8.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2671d09e2b..7dd1290db0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -34061,14 +34061,14 @@ designs. Broman et al. (2018) .") (define-public r-seqminer (package (name "r-seqminer") - (version "8.6") + (version "8.9") (source (origin (method url-fetch) (uri (cran-uri "seqminer" version)) (sha256 (base32 - "1fm76mam5hp5v0hj27ywna7vafrw7mnwph30fqdb17163rrhr1ca")))) + "1cnsy1cjz4rcm32hzcvr1d43y4m7sdkzim1mwsn3490mf3xmi3i1")))) (build-system r-build-system) (inputs (list zlib)) -- cgit v1.2.3 From ca6f22f63b7a339336a43f1eb152782a9d1189d1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 17 Apr 2023 11:10:36 +0200 Subject: gnu: r-stars: Update to 0.6-1. * gnu/packages/cran.scm (r-stars): Update to 0.6-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7dd1290db0..94920c3e9a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -35867,14 +35867,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (define-public r-stars (package (name "r-stars") - (version "0.6-0") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "stars" version)) (sha256 (base32 - "0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9")))) + "19q44bs2w12lyim8gzfpgxfkp2cdf29cav4cv74vzsxrv8xdny0z")))) (properties `((upstream-name . "stars"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From a117510a8c9246f8e09577780ccaf3955f98d7ad Mon Sep 17 00:00:00 2001 From: Kyle Andrews Date: Fri, 14 Apr 2023 16:05:40 +0000 Subject: gnu: Add r-littler. * gnu/packages/cran.scm (r-littler): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 94920c3e9a..03c92e7ffd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6698,6 +6698,41 @@ functions from LINPACK.") ;; Any GPL version. (license (list license:gpl2+ license:gpl3+)))) +(define-public r-littler + (package + (name "r-littler") + (version "0.3.18") + (source (origin + (method url-fetch) + (uri (cran-uri "littler" version)) + (sha256 + (base32 + "1lp6a62g3yhzr4pv9kynibv7k9pd546w6hifs1aficyxbyg4dgqq")))) + (properties `((upstream-name . "littler"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'install-executable + (lambda _ + (install-file "inst/bin/r" + (string-append #$output "/bin"))))))) + (inputs (list icu4c zlib)) + (native-inputs + (list r-simplermarkdown pkg-config)) + (home-page "https://github.com/eddelbuettel/littler") + (synopsis "R at the command-line via r") + (description + "This package provides a scripting and command-line front-end is provided +by r (aka littler) as a lightweight binary wrapper around the GNU R language +and environment for statistical computing and graphics. While R can be used +in batch mode, the r binary adds full support for both shebang-style scripting +(i.e. using a hash-mark-exclamation-path expression as the first line in +scripts) as well as command-line use in standard pipelines. In other words, r +provides the R language without the environment.") + (license license:gpl2+))) + (define-public r-fitdistrplus (package (name "r-fitdistrplus") -- cgit v1.2.3