From e2b2baa71dfe22e9036fa1d6025e5a6b85b30820 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Thu, 16 Aug 2018 15:28:34 -0400 Subject: Revert "gnu: Add r-hash." This reverts commit b9ff25999d6b3d947ceacd7d01d3b64ac2c8120d. This package is a duplicate of the r-hash package added in 4646d18eb769691224d25ead7da416b5f8783529. --- gnu/packages/cran.scm | 21 --------------------- 1 file changed, 21 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 411e5a9820..24c540de56 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4767,27 +4767,6 @@ approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.") (license license:gpl2))) -(define-public r-hash - (package - (name "r-hash") - (version "2.2.6") - (source - (origin - (method url-fetch) - (uri (cran-uri "hash" version)) - (sha256 - (base32 - "0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz")))) - (build-system r-build-system) - (home-page "https://cran.r-project.org/web/packages/hash/") - (synopsis "Implementation of hash/associated arrays/dictionaries") - (description - "This package implements a data structure similar to hashes in Perl and -dictionaries in Python but with a purposefully R flavor. For objects of -appreciable size, access using hashes outperforms native named lists and -vectors.") - (license license:gpl2+))) - (define-public r-proc (package (name "r-proc") -- cgit v1.2.3 From b55e64d49ffe1319564460eb21f89a0831b95833 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Aug 2018 14:01:27 +0200 Subject: gnu: Add r-ps. * gnu/packages/cran.scm (r-ps): New public variable. --- gnu/packages/cran.scm | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 24c540de56..59c74c29f5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -461,6 +461,24 @@ print, summary, plot, update, etc. @end itemize\n") (license license:gpl2))) +(define-public r-ps + (package + (name "r-ps") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ps" version)) + (sha256 + (base32 "1zm9qkyvy1fvcjvmgw51iqw8x1xzkpy7rx7xnchwfj0xpzal0ljx")))) + (build-system r-build-system) + (home-page "http://ps.r-lib.org") + (synopsis "List, query, and manipulate system processes") + (description + "The ps package implements an API to list, query, and manipulate system +processes. Most of its code is based on the @code{psutil} Python package.") + (license license:bsd-3))) + (define-public r-rcpp (package (name "r-rcpp") -- cgit v1.2.3 From 4b6a0dfc2b3c41857ce4a3e2e667a5c9c32ef0e1 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 18 Aug 2018 14:03:50 +0200 Subject: gnu: r-processx: Update to 3.2.0. * gnu/packages/cran.scm (r-processx): Update to 3.2.0. [propagated-inputs]: Add r-ps. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 59c74c29f5..a740bf1aa9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2477,18 +2477,19 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.1.0") + (version "3.2.0") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 (base32 - "0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i")))) + "1pzx4ap4xa07gf9zkd6hacdsnb9sp3kb60a7v7ljl0ywrcpn1fn4")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) ("r-crayon" ,r-crayon) + ("r-ps" ,r-ps) ("r-r6" ,r-r6) ("r-testthat" ,r-testthat))) (home-page "https://github.com/r-lib/processx3") -- cgit v1.2.3 From 632cefdac932ed11046fb9b5809742ec11dba7f5 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 15:56:47 +0200 Subject: gnu: r-mitml: Update to 0.3-6. * gnu/packages/cran.scm (r-mitml): Update to 0.3-6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a740bf1aa9..348b49998d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1951,14 +1951,14 @@ clustered data.") (define-public r-mitml (package (name "r-mitml") - (version "0.3-5") + (version "0.3-6") (source (origin (method url-fetch) (uri (cran-uri "mitml" version)) (sha256 (base32 - "1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb")))) + "1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw")))) (build-system r-build-system) (propagated-inputs `(("r-haven" ,r-haven) -- cgit v1.2.3 From dc98bbcad43fa56e498fa6bee892f1dddb70cb34 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:02:01 +0200 Subject: gnu: r-lava: Update to 1.6.3. * gnu/packages/cran.scm (r-lava): Update to 1.6.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 348b49998d..c5bfc25433 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1429,14 +1429,14 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "1r47pps39cgvxhg1s0bqknf4jl91pbb0c76q5icxivhwb172fqcm")))) + "0cayjspry3r2lcbvl77v5v52b2zarri3b8xsf87pw5a3jn9anxcf")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) -- cgit v1.2.3 From cd4abb6d4a88bc9246ca38064aff4c35259a0f85 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:07:42 +0200 Subject: gnu: r-trend: Update to 1.1.1. * gnu/packages/cran.scm (r-trend): Update to 1.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c5bfc25433..30814aa70d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3128,14 +3128,14 @@ interface.") (define-public r-trend (package (name "r-trend") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "trend" version)) (sha256 (base32 - "06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b")))) + "1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q")))) (build-system r-build-system) (propagated-inputs `(("r-extradistr" ,r-extradistr))) -- cgit v1.2.3 From 9b77f724c0efb35034ca66de55fc76f00c4f9dd7 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:19:30 +0200 Subject: gnu: r-jomo: Update to 2.6-3. * gnu/packages/cran.scm (r-jomo): Update to 2.6-3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 30814aa70d..08c40bed85 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1905,14 +1905,14 @@ or between integer vectors representing generic sequences.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-2") + (version "2.6-3") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7")))) + "14s8q0j5zgl1g1pfxg3a4y1jzvs0wl61ir4992wsj7safskj7zvi")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) -- cgit v1.2.3 From 2045af8035b9addef6065b7c04893fd8c38aede6 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:28:21 +0200 Subject: gnu: r-xfun: Update to 0.3. * gnu/packages/cran.scm (r-xfun): Update to 0.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 08c40bed85..8890ef810f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2629,14 +2629,14 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.2") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 (base32 - "0zl22fcw90kdvzkjyf6vbmdmn9rz3bl51522fasvmykypffyng4a")))) + "1r11dd49ngmjgbjdv28a9c1jp8cg1l50x0acbsamzz576p8i2wl9")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") -- cgit v1.2.3 From 8b0701d97ab2f023c0c5f9d0a5aef1d731923a7b Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:29:30 +0200 Subject: gnu: r-tinytex: Update to 0.6. * gnu/packages/cran.scm (r-tinytex): Update to 0.6. [propagated-inputs]: Add r-xfun. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8890ef810f..882c65e61c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2712,15 +2712,17 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.5") + (version "0.6") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1pg4jfyvandjwz3lmr38pbqi9d045iwkk3xklhsfhhxq6aviq9p7")))) + "16y9dldaff2kx1fkm92p7zlph0dcrdmlmavpdgf5y9jbhmc8g83f")))) (build-system r-build-system) + (propagated-inputs + `(("r-xfun" ,r-xfun))) (home-page "https://github.com/yihui/tinytex") (synopsis "Helper functions for TeX Live and compiling LaTeX documents") (description -- cgit v1.2.3 From 9c112bee913f689ac2603bc7d70616fb1966c54f Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 20 Aug 2018 16:31:56 +0200 Subject: gnu: r-energy: Update to 1.7-5. * gnu/packages/cran.scm (r-energy): Update to 1.7-5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 882c65e61c..b541f1c327 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1294,14 +1294,14 @@ data). Weighted versions of MLE, MME and QME are available.") (define-public r-energy (package (name "r-energy") - (version "1.7-4") + (version "1.7-5") (source (origin (method url-fetch) (uri (cran-uri "energy" version)) (sha256 (base32 - "12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd")))) + "15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) -- cgit v1.2.3