From 40b114c0bb3da70a209f204e50505c8e4b987257 Mon Sep 17 00:00:00 2001 From: Eric Bavier Date: Wed, 13 Feb 2019 19:04:38 -0600 Subject: gnu: dealii: Upgrade to 9.0.1. * gnu/packages/patches/dealii-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch. [arguments]: Use new MPI configuration flags. --- gnu/packages/patches/dealii-mpi-deprecations.patch | 28 ++++++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 gnu/packages/patches/dealii-mpi-deprecations.patch (limited to 'gnu/packages/patches/dealii-mpi-deprecations.patch') diff --git a/gnu/packages/patches/dealii-mpi-deprecations.patch b/gnu/packages/patches/dealii-mpi-deprecations.patch new file mode 100644 index 0000000000..816d54140a --- /dev/null +++ b/gnu/packages/patches/dealii-mpi-deprecations.patch @@ -0,0 +1,28 @@ +From 40538ad31a71495649d174b0f7be5f7135d0a905 Mon Sep 17 00:00:00 2001 +From: David Wells +Date: Sat, 2 Feb 2019 10:00:38 -0500 +Subject: [PATCH] Avoid calling a deprecated MPI function. + +This was deprecated a long time ago (1996) and is not present in the +latest version of openMPI (4.0): see + +https://www.open-mpi.org/faq/?category=mpi-removed + +Credit goes to Pratik Nayak for finding this issue. +--- + source/base/mpi.cc | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/source/base/mpi.cc b/source/base/mpi.cc +index bd1f7f9846a..b8cd45e7c26 100644 +--- a/source/base/mpi.cc ++++ b/source/base/mpi.cc +@@ -448,7 +448,7 @@ namespace Utilities + MPI_Aint displacements[] = {0, offsetof(MinMaxAvg, min_index)}; + MPI_Datatype types[] = {MPI_DOUBLE, MPI_INT}; + +- ierr = MPI_Type_struct(2, lengths, displacements, types, &type); ++ ierr = MPI_Type_create_struct(2, lengths, displacements, types, &type); + AssertThrowMPI(ierr); + + ierr = MPI_Type_commit(&type); -- cgit v1.2.3