From 0022e9f4c000f2b8054b470a06d75f62b2b8cafb Mon Sep 17 00:00:00 2001 From: zimoun Date: Fri, 4 Dec 2020 03:35:34 +0100 Subject: gnu: r-ncdfflow: Fix r-rhdf5libs link. * gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a plain directory on the list of libraries to link. Co-authored-by: Ricardo Wurmus . --- gnu/packages/bioconductor.scm | 11 +++++++++++ 1 file changed, 11 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 299204540d..76a82ffd67 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6110,6 +6110,17 @@ change point detection.") "1knqc3ic2vpck7n7m7adxjz3ac70ra89d5gvlgp9r2q3kgaciwac")))) (properties `((upstream-name . "ncdfFlow"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-linking + (lambda _ + (substitute* "src/Makevars" + ;; This is to avoid having a plain directory on the list of + ;; libraries to link. + (("\\(RHDF5_LIBS\\)" match) + (string-append match "/libhdf5.a"))) + #t))))) (inputs `(("zlib" ,zlib))) (propagated-inputs -- cgit v1.2.3