From 73fe0dab503c3a2d2a2dac291e3d3809872acbf4 Mon Sep 17 00:00:00 2001 From: Mădălin Ionel Patrașcu Date: Wed, 27 Apr 2022 13:20:14 +0200 Subject: gnu: Add r-agdex. * gnu/packages/bioconductor.scm (r-agdex): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 088d50f7f5..3d68db6d68 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1794,6 +1794,33 @@ of samples that are affected by RNA degradation.") ;; the R file header specifies GPL2 or later (license license:gpl2+))) +(define-public r-agdex + (package + (name "r-agdex") + (version "1.42.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AGDEX" version)) + (sha256 + (base32 + "0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64")))) + (properties `((upstream-name . "AGDEX"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-gseabase)) + (home-page "https://bioconductor.org/packages/AGDEX") + (synopsis + "Evaluate agreement of differential expression for cross-species genomics") + (description + "The objective of @code{AGDEX} is to evaluate whether the results of a +pair of two-group differential expression analysis comparisons show a level of +agreement that is greater than expected if the group labels for each two-group +comparison are randomly assigned. The agreement is evaluated for the entire +transcriptome and (optionally) for a collection of pre-defined gene-sets. +Additionally, the procedure performs permutation-based differential expression +and meta analysis at both gene and gene-set levels of the data from each +experiment.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") -- cgit v1.2.3