From a8bac123f0f556b5911e34ccfac733a78178643e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 21 Oct 2021 14:49:01 +0000
Subject: gnu: Add gdc-client.

* gnu/packages/bioinformatics.scm (gdc-client): New variable.
---
 gnu/packages/bioinformatics.scm | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cd848b6e00..395e8ce509 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7841,6 +7841,46 @@ includes software to
 ")
       (license license:cc0))))
 
+(define-public gdc-client
+  (package
+    (name "gdc-client")
+    (version "1.6.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/NCI-GDC/gdc-client.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0cagawlzjwj3wam10lv64xgbfx4zcnzxi5sjpsdhq7rn4z24mzc2"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "requirements.txt"
+               (("==") ">=")))))))
+    (inputs
+     `(("python-cryptography" ,python-cryptography)
+       ("python-intervaltree" ,python-intervaltree)
+       ("python-jsonschema" ,python-jsonschema)
+       ("python-lxml" ,python-lxml)
+       ("python-ndg-httpsclient" ,python-ndg-httpsclient)
+       ("python-progressbar2" ,python-progressbar2)
+       ("python-pyasn1" ,python-pyasn1)
+       ("python-pyopenssl" ,python-pyopenssl)
+       ("python-pyyaml" ,python-pyyaml)
+       ("python-requests" ,python-requests)
+       ("python-termcolor" ,python-termcolor)))
+    (home-page "https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool")
+    (synopsis "GDC data transfer tool")
+    (description "The gdc-client provides several convenience functions over
+the GDC API which provides general download/upload via HTTPS.")
+    (license license:asl2.0)))
+
 (define-public vsearch
   (package
     (name "vsearch")
-- 
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