From a8fff63daa9a4dababac30826423d72e01a7b6c0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 2 Dec 2021 11:57:28 +0100 Subject: gnu: Add python-mygene. * gnu/packages/bioinformatics.scm (python-mygene): New variable. --- gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9cb2f1ed5d..c4da571f95 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10340,6 +10340,27 @@ single-cell RNA-seq data.") API services.") (license license:bsd-3))) +(define-public python-mygene + (package + (name "python-mygene") + (version "3.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mygene" version)) + (sha256 + (base32 "1snszwdgfygchxshcbry3b5pbcw3g1isp8dw46razxccqaxwlag7")))) + (build-system python-build-system) + (propagated-inputs + `(("python-biothings-client" ,python-biothings-client))) + (home-page "https://github.com/biothings/mygene.py") + (synopsis "Python Client for MyGene.Info services.") + (description "MyGene.Info provides simple-to-use REST web services +to query/retrieve gene annotation data. It's designed with simplicity +and performance emphasized. Mygene is a Python wrapper to access +MyGene.Info services.") + (license license:bsd-3))) + ;; We cannot use the latest commit because it requires Java 9. (define-public java-forester (let ((commit "86b07efe302d5094b42deed9260f719a4c4ac2e6") -- cgit v1.2.3