From e118b92cfe7a598b71dbbda2622b7551f4a72104 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 8 May 2023 11:37:08 +0200
Subject: gnu: Add r-seurat5.

* gnu/packages/cran.scm (r-seurat5): New variable.
---
 gnu/packages/cran.scm | 68 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 68 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 53cab3adad..e5a6c806b4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -34415,6 +34415,74 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
 discovery of differentially expressed genes and markers.")
     (license license:gpl3)))
 
+;; Seurat5 is only available via the seurat5 branch.  It will replace r-seurat
+;; eventually once it has been released to CRAN.
+(define-public r-seurat5
+  (let ((commit "9d59c02042b9ae4f182fbde84cc8b18c0873ef4d")
+        (revision "1"))
+    (package
+      (inherit r-seurat)
+      (name "r-seurat5")
+      (version (git-version "4.9.9.9044" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/satijalab/seurat")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0y4wl6aanq9scn2clazlxsar35g64v4sfy561j43fq1i85na7m4i"))))
+      (propagated-inputs (list r-cluster
+                               r-cowplot
+                               r-fastdummies
+                               r-fitdistrplus
+                               r-future
+                               r-future-apply
+                               r-generics
+                               r-ggplot2
+                               r-ggrepel
+                               r-ggridges
+                               r-httr
+                               r-ica
+                               r-igraph
+                               r-irlba
+                               r-jsonlite
+                               r-kernsmooth
+                               r-leiden
+                               r-lifecycle
+                               r-lmtest
+                               r-mass
+                               r-matrix
+                               r-matrixstats
+                               r-miniui
+                               r-patchwork
+                               r-pbapply
+                               r-plotly
+                               r-png
+                               r-progressr
+                               r-rann
+                               r-rcolorbrewer
+                               r-rcpp
+                               r-rcppannoy
+                               r-rcppeigen
+                               r-rcpphnsw
+                               r-rcppprogress
+                               r-reticulate
+                               r-rlang
+                               r-rocr
+                               r-rspectra
+                               r-rtsne
+                               r-scales
+                               r-scattermore
+                               r-sctransform
+                               r-seurat5object
+                               r-shiny
+                               r-spatstat-explore
+                               r-spatstat-geom
+                               r-tibble
+                               r-uwot)))))
+
 (define-public r-seuratdisk
   (let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610")
         (revision "1"))
-- 
cgit v1.2.3