From 8e0267f6e48e458cf52bf29ed2132f3c14fb9908 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:17:26 +0200 Subject: gnu: r-stringdist: Update to 0.9.5.2. * gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 005016b984..467452f9a9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2819,14 +2819,14 @@ color labels, layout, etc.") (define-public r-stringdist (package (name "r-stringdist") - (version "0.9.5.1") + (version "0.9.5.2") (source (origin (method url-fetch) (uri (cran-uri "stringdist" version)) (sha256 (base32 - "0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa")))) + "0nw8c317qkfq63pr0prl0hx522ddfq4cbgixb5r4pq3fxk9z303l")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/stringdist") (synopsis "Approximate string matching and string distance functions") -- cgit v1.2.3 From 154e20e5f3218cc07cfcd32d14b45c752a949748 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:17:37 +0200 Subject: gnu: r-seriation: Update to 1.2-7. * gnu/packages/cran.scm (r-seriation): Update to 1.2-7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 467452f9a9..dc50bfb798 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3583,14 +3583,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.2-5") + (version "1.2-7") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "0sk4wfwxxhz3nwbcsfshb93gra4c9p5pvpsz00d7f9nkkmhs97ws")))) + "0dbz5b5msy4fr2whhphyriqk1xc6305zpjq59rrwxyz3d7rzwpa6")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) -- cgit v1.2.3 From f7f65cbaa6558b75d5e0842a1fa1463deac8226e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:17:41 +0200 Subject: gnu: r-statnet-common: Update to 4.3.0. * gnu/packages/cran.scm (r-statnet-common): Update to 4.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dc50bfb798..c1b0afebc3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3833,14 +3833,14 @@ supports arbitrary vertex/edge/graph attributes.") (define-public r-statnet-common (package (name "r-statnet-common") - (version "4.2.0") + (version "4.3.0") (source (origin (method url-fetch) (uri (cran-uri "statnet.common" version)) (sha256 (base32 - "0q942g6kqmqxfss1cxb3yg8y5r1k1h5cyy99s1cfisrn6hqc6xhi")))) + "0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3")))) (properties `((upstream-name . "statnet.common"))) (build-system r-build-system) -- cgit v1.2.3 From 9ce3d17ee3a50e12424cb3f6277fd1b63188984e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:17:46 +0200 Subject: gnu: r-tseries: Update to 0.10-47. * gnu/packages/cran.scm (r-tseries): Update to 0.10-47. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c1b0afebc3..e2fa5c6175 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4033,14 +4033,14 @@ financial trading strategies.") (define-public r-tseries (package (name "r-tseries") - (version "0.10-46") + (version "0.10-47") (source (origin (method url-fetch) (uri (cran-uri "tseries" version)) (sha256 (base32 - "08kjw0bfj5gfcrxpblwqxwna8a5g9gnr7ya61qb02r263pyhm50j")))) + "0yzvc9djp3angvxdxqi60wi726y76ablsb71q88ycvw0avgpf8r0")))) (build-system r-build-system) (propagated-inputs `(("r-quadprog" ,r-quadprog) -- cgit v1.2.3 From bc418c97ad87cd9142da98527c219eee78ed5eea Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:17:52 +0200 Subject: gnu: r-sjlabelled: Update to 1.1.0. * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.0. [propagated-inputs]: Remove r-dplyr; add r-tidyselect. --- gnu/packages/cran.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e2fa5c6175..209eebee08 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5933,22 +5933,22 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.0.17") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "00c0c22ynpihgf2bvmcfnkvqwqvxax2zzb7wldsmg2f7z5a32aa6")))) + "0rnmlwpp41h04dzfjd5ncvzjzs43slaimb4v2in1axznv3haafyc")))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) - ("r-haven" ,r-haven) + `(("r-haven" ,r-haven) ("r-insight" ,r-insight) ("r-magrittr" ,r-magrittr) ("r-purrr" ,r-purrr) - ("r-rlang" ,r-rlang))) + ("r-rlang" ,r-rlang) + ("r-tidyselect" ,r-tidyselect))) (home-page "https://github.com/strengejacke/sjlabelled") (synopsis "Labelled data utility functions") (description -- cgit v1.2.3 From 5bdc59c6a977eb6cbaaad0de5370561884606632 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:11 +0200 Subject: gnu: r-proc: Update to 1.15.0. * gnu/packages/cran.scm (r-proc): Update to 1.15.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 209eebee08..53c4e03ff3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6364,14 +6364,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "0ki1pvj5iaki81crapvwqllg5avn5qlvv62axnsdkdcmv9xc3wg0")))) + "1dxxkwdhxfnj2znq4c5ggrr9m5klh5pmfxg17rz59vr2hfb73m24")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From a1473cb4ec8ea9f6da3cd6d8ad7c368650bacf5f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:16 +0200 Subject: gnu: r-sjstats: Update to 0.17.5. * gnu/packages/cran.scm (r-sjstats): Update to 0.17.5. [propagated-inputs]: Add r-bayestestr and r-performance; remove r-matrix. --- gnu/packages/cran.scm | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 53c4e03ff3..d63b5bb73e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7850,25 +7850,26 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.4") + (version "0.17.5") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 (base32 - "012hp9m17xzjnsfvjjz2wdfgxm3irsrfx0zmahfnfmgdrwxd5vk5")))) + "1x9ybvz84vgaabmqp4z6crbv5q6kqjg6msk1spbr11zx9dbj06ca")))) (build-system r-build-system) (propagated-inputs - `(("r-broom" ,r-broom) + `(("r-bayestestr" ,r-bayestestr) + ("r-broom" ,r-broom) ("r-dplyr" ,r-dplyr) ("r-emmeans" ,r-emmeans) ("r-insight" ,r-insight) ("r-lme4" ,r-lme4) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) - ("r-matrix" ,r-matrix) ("r-modelr" ,r-modelr) + ("r-performance" ,r-performance) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-sjlabelled" ,r-sjlabelled) -- cgit v1.2.3 From bf6895ef4f47904f952e8c829891bee64c0f177f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:40 +0200 Subject: gnu: r-performance: Update to 0.2.0. * gnu/packages/cran.scm (r-performance): Update to 0.2.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d63b5bb73e..83facdd259 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7949,14 +7949,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "19lfx25hkavzbycrh6hq4v24a0dz4s60ryq6jyihjlxgrb9g7cnw")))) + "1pzd6z7i1jxr2xi1shg3d0bxlbpmjl7kpmwgjnfys6syv57znd1z")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) -- cgit v1.2.3 From 85f3ec6a7bf1aab346038642314a4eb04d807af2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:44 +0200 Subject: gnu: r-iso: Update to 0.0-18. * gnu/packages/cran.scm (r-iso): Update to 0.0-18. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83facdd259..d5d79f686b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9767,14 +9767,14 @@ the combination of non-negative and non-positive constraints.") (define-public r-iso (package (name "r-iso") - (version "0.0-17") + (version "0.0-18") (source (origin (method url-fetch) (uri (cran-uri "Iso" version)) (sha256 (base32 - "0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0")))) + "014mm5b1f7i6nwlz3kyg1biph0y542kcx5bd13p68cv5a928qzid")))) (properties `((upstream-name . "Iso"))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) -- cgit v1.2.3 From 754f09a3334b236d67cb874d0df70a927b3616dc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:48 +0200 Subject: gnu: r-rsvd: Update to 1.0.1. * gnu/packages/cran.scm (r-rsvd): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d5d79f686b..356595ff33 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11026,14 +11026,14 @@ machine or distributed on a compute cluster.") (define-public r-rsvd (package (name "r-rsvd") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "rsvd" version)) (sha256 (base32 - "0vjhrvnkl9rmvl8sv2kac5sd10z3fgxymb676ynxzc2pmhydy3an")))) + "1faskhf5j2bj9f971qljsmh182g3rnyilj1wwijz530a6skxidzz")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) -- cgit v1.2.3 From e7bc880274f1489ba6508a407abded965573793c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:53 +0200 Subject: gnu: r-markdown: Update to 1.0. * gnu/packages/statistics.scm (r-markdown): Update to 1.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e845fc0bb0..12e22b06a3 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1404,13 +1404,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "0.9") + (version "1.0") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "08xzs4bcf12jxp0276m6xqvq8kcgg5qp6fxrvsz6r9x73jjccs1h")))) + "19nrz0ba1yd5kicd65crkkz2r3kialm2hm6zdkp495l2s5r80b8p")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally -- cgit v1.2.3 From 0638ee43a4351304fec85ef4d72a1abc9b50a20f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:18:56 +0200 Subject: gnu: r-tibble: Update to 2.1.3. * gnu/packages/statistics.scm (r-tibble): Update to 2.1.3. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 12e22b06a3..24d4967cd7 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1670,14 +1670,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "2.1.2") + (version "2.1.3") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "1sb5j6k8hp7yf7grjjhn45hhc163fcndiw9zw976zc74f1856kpj")))) + "06jfayiip8j8ibdhw3fvxn4n8aqbqhwanrszpzlsf92xdfgfm34s")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) -- cgit v1.2.3 From 815c7389b7d2bb2371d2c91be9aec2089686d762 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:00 +0200 Subject: gnu: r-dbplyr: Update to 1.4.1. * gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 24d4967cd7..9053669f1b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1731,14 +1731,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "0f4gfkzl07gfwihyc747kdnzxahaw2g28wli4jmikrvczldvjqjx")))) + "15fs66qq2p20gi3y2jlcsw27ach8rwkkkgr1mz2qbiyddbsjks6g")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) -- cgit v1.2.3 From 6155b589c3c86a07c296554490fc86c2a9f2907e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:04 +0200 Subject: gnu: r-xml: Update to 3.98-1.20. * gnu/packages/statistics.scm (r-xml): Update to 3.98-1.20. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 9053669f1b..b0212ad707 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2882,13 +2882,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.98-1.19") + (version "3.98-1.20") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "1axyfa56q45x7z4zd56aasdn9hz9niv2vv5qm1zp9i94vyic9cc1")))) + "0n28m8iz1wfgixr7fjswl238c5w9kggsrw0c8hdzp859dqvqdbs6")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) -- cgit v1.2.3 From cb6d481561f19515ac85045213c7160426f887d9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:09 +0200 Subject: gnu: r-e1071: Update to 1.7-2. * gnu/packages/statistics.scm (r-e1071): Update to 1.7-2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index b0212ad707..d8c2d111ba 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3365,14 +3365,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.7-1") + (version "1.7-2") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "1zlxz3da216q6v6r4ff60il121xwz7g7m639vzdwglhw3jjh8psw")))) + "0lipj692rjjw8rrhqh2k9i5dh8y2sjrw9q53rwm32irhx2f2j73j")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class))) -- cgit v1.2.3 From d0b3d10e80259f24577f0bf16d835ac5eb3243eb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:13 +0200 Subject: gnu: r-prabclus: Update to 2.3-1. * gnu/packages/statistics.scm (r-prabclus): Update to 2.3-1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d8c2d111ba..0af4418500 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4772,14 +4772,14 @@ and resampling-based inference.") (define-public r-prabclus (package (name "r-prabclus") - (version "2.2-7.1") + (version "2.3-1") (source (origin (method url-fetch) (uri (cran-uri "prabclus" version)) (sha256 (base32 - "0x998nidd7abq5nqynyr8q79z056qbli23mvad6f09fjn2xz6nrc")))) + "1h5k13w8mmmdy74l145zh64f339wy78z1nlg8xr3zg23gmv98cpg")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) -- cgit v1.2.3 From e95d5ad958629d1f784f712a2ead6b0749165467 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:19 +0200 Subject: gnu: r-fpc: Update to 2.2-2. * gnu/packages/statistics.scm (r-fpc): Update to 2.2-2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0af4418500..bbb73c00d3 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4968,14 +4968,14 @@ of the points.") (define-public r-fpc (package (name "r-fpc") - (version "2.2-1") + (version "2.2-2") (source (origin (method url-fetch) (uri (cran-uri "fpc" version)) (sha256 (base32 - "183awn9fbigsy3rwmg5l39zpfg2zpbb94hkx7k99v2dir8dpdy85")))) + "1lzqxi2jzc753j4356b949isx2nccd32mw2ch665q78nxccp145n")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) -- cgit v1.2.3 From eb3f1c2d24057c07772bef75431fc11dca644a2c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:24 +0200 Subject: gnu: r-quantreg: Update to 5.40. * gnu/packages/statistics.scm (r-quantreg): Update to 5.40. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index bbb73c00d3..5184c4c5ef 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5139,14 +5139,14 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.38") + (version "5.40") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 (base32 - "1vvvnk291f0dccg04l3nsnk585gq75sk0b2vdbrqv3lczvv18nw1")))) + "1srni6lkgvy44ljxndz2j9ca702z2wy81f6z6mbbi6h06ni11qw6")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) -- cgit v1.2.3 From 303862330b65f1a606b83c6e6edf419886c7a02f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:28 +0200 Subject: gnu: r-numderiv: Update to 2016.8-1.1. * gnu/packages/statistics.scm (r-numderiv): Update to 2016.8-1.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5184c4c5ef..156a329627 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5377,14 +5377,14 @@ are computed via non-Monte Carlo methods.") (define-public r-numderiv (package (name "r-numderiv") - (version "2016.8-1") + (version "2016.8-1.1") (source (origin (method url-fetch) (uri (cran-uri "numDeriv" version)) (sha256 (base32 - "07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v")))) + "0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q")))) (properties `((upstream-name . "numDeriv"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/numDeriv") -- cgit v1.2.3 From 85e067161aa5d01501771a472194334c87b48114 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:33 +0200 Subject: gnu: r-iranges: Update to 2.18.1. * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4b8e662a3a..7c6a4458c1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7373,13 +7373,13 @@ S4Vectors package itself.") (define-public r-iranges (package (name "r-iranges") - (version "2.18.0") + (version "2.18.1") (source (origin (method url-fetch) (uri (bioconductor-uri "IRanges" version)) (sha256 (base32 - "0g06y6xlm2q7p7g7phfc8qj14pqpgbb0mkyjzkfgsrwjmzvpwy6m")))) + "1d64sh43pfc9vj2l7y7x6sb44l67wlnn3dzygp7ws0smn06mardq")))) (properties `((upstream-name . "IRanges"))) (build-system r-build-system) -- cgit v1.2.3 From 823e23fffe686c2105970682da9a89f7464f4647 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:36 +0200 Subject: gnu: r-msnbase: Update to 2.10.1. * gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7c6a4458c1..bb15672d51 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9370,14 +9370,14 @@ structure (pcaRes) to provide a common interface to the PCA results.") (define-public r-msnbase (package (name "r-msnbase") - (version "2.10.0") + (version "2.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "MSnbase" version)) (sha256 (base32 - "1lqdlyvs2c9g55zf8gnw142ps4jid644fhfvclnax7sjjwrqdjzv")))) + "0z63yqazkycq0zbbarq9ida6al35hv3g7g9g7s7bss4gh0hk7lhd")))) (properties `((upstream-name . "MSnbase"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 61730c3db46dae0ee5356d3a6acbef3198203764 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:40 +0200 Subject: gnu: r-aucell: Update to 1.6.1. * gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5ffb7c4e3c..1348be9f9c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3621,14 +3621,14 @@ investigation using RNA-seq data.") (define-public r-aucell (package (name "r-aucell") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (bioconductor-uri "AUCell" version)) (sha256 (base32 - "025q1as9pifbxa7hidlz634q6d7l73zx8mqy4rjbfrk7d5615xvm")))) + "1vd8w6dygn1b5bwlha09mm6fbwyj07pmawpv53agcg1y7jlxs31b")))) (properties `((upstream-name . "AUCell"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 2d1d59ab57587e7853658fefd59f8532502d09fa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 9 Jun 2019 15:19:44 +0200 Subject: gnu: r-rhisat2: Update to 1.0.2. * gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1348be9f9c..c1bbcdc2c0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4438,14 +4438,14 @@ interpretation.") (define-public r-rhisat2 (package (name "r-rhisat2") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhisat2" version)) (sha256 (base32 - "01jhj5vvfl4n2d0nl3nd1iw9nii85mgw2adnrmxb8wwlxgy240vr")))) + "1y3zqvk1vbcb10r1myh6f5yzjvf7bhwhpiq78bs1k6spli4bzj0q")))) (properties `((upstream-name . "Rhisat2"))) (build-system r-build-system) (native-inputs -- cgit v1.2.3 From 88e1bce53e511c1c8ac260da30d28d5e6bdad692 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 9 Jun 2019 03:43:25 +0200 Subject: gnu: radeontop: Update to 1.2. * gnu/packages/linux.scm (radeontop): Update to 1.2. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index cf3b838ea8..08bbb95ef3 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -4405,7 +4405,7 @@ developers.") (define-public radeontop (package (name "radeontop") - (version "1.1") + (version "1.2") (home-page "https://github.com/clbr/radeontop/") (source (origin (method url-fetch) @@ -4413,7 +4413,7 @@ developers.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1fv06j5c99imvzkac3j40lgjhr5b2i77fnyffhlvj92bli1fm1c6")))) + "0jc3qs8m5hhbhxra4yslcq3vi179hvcwvdal80gsrgz6cj78zvfw")))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases -- cgit v1.2.3 From ee861a54ab6ff62095a608340f83afbddf0133be Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 9 Jun 2019 03:46:49 +0200 Subject: gnu: radeontop: Don't use unstable tarball. * gnu/packages/linux.scm (radeontop)[source]: Use GIT-FETCH and GIT-FILE-NAME. [home-page]: Move down to its conventional spot. --- gnu/packages/linux.scm | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 08bbb95ef3..36b4cb6c91 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -4406,14 +4406,15 @@ developers.") (package (name "radeontop") (version "1.2") - (home-page "https://github.com/clbr/radeontop/") - (source (origin - (method url-fetch) - (uri (string-append home-page "archive/v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0jc3qs8m5hhbhxra4yslcq3vi179hvcwvdal80gsrgz6cj78zvfw")))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/clbr/radeontop.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1b1m30r2nfwqkajqw6m01xmfhlq83z1qylyijxg7962mp9x2k0gw")))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -4437,6 +4438,7 @@ developers.") ("libpciaccess" ,libpciaccess) ("libxcb" ,libxcb) ("ncurses" ,ncurses))) + (home-page "https://github.com/clbr/radeontop/") (synopsis "Usage monitor for AMD Radeon graphics") (description "RadeonTop monitors resource consumption on supported AMD Radeon Graphics Processing Units (GPUs), either in real time as bar graphs on -- cgit v1.2.3 From c3c9716e0edbe0c647f592e13879c7d182b06c2c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 9 Jun 2019 15:59:45 +0200 Subject: gnu: cfitsio: Update to 3.47. * gnu/packages/astronomy.scm (cfitsio): Update to 3.47. --- gnu/packages/astronomy.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index ab5dcd92a7..9ddb9e1d52 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 John Darrington -;;; Copyright © 2018 Tobias Geerinckx-Rice +;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice ;;; Copyright © 2018, 2019 Efraim Flashner ;;; ;;; This file is part of GNU Guix. @@ -37,15 +37,15 @@ (define-public cfitsio (package (name "cfitsio") - (version "3.450") + (version "3.47") (source (origin (method url-fetch) (uri (string-append "http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/" - name (string-replace-substring version "." "") ".tar.gz")) + name "-" version ".tar.gz")) (sha256 - (base32 "0bmrkw6w65zb0k3mszaaqy1f4zjm2hl7njww74nb5v38wvdi4q5z")))) + (base32 "1vzlxnrjckz78p2wf148v2z3krkwnykfqvlj42sz3q711vqid1a1")))) (build-system gnu-build-system) ;; XXX Building with curl currently breaks wcslib. It doesn't use ;; pkg-config and hence won't link with -lcurl. -- cgit v1.2.3 From 0cece1b50223fe4f4dc3b35a392f5ccf0cb35608 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 9 Jun 2019 16:06:53 +0200 Subject: gnu: virtualgl: Update to 2.6.2. * gnu/packages/gl.scm (virtualgl): Update to 2.6.2. --- gnu/packages/gl.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index a8654d047f..58b5860602 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -724,7 +724,7 @@ mixed vector/bitmap output.") (define-public virtualgl (package (name "virtualgl") - (version "2.6.1") + (version "2.6.2") (source (origin (method git-fetch) @@ -733,7 +733,7 @@ mixed vector/bitmap output.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "04fdwm6mz76lw4iwd5m7yxjfhpa0rpxd357bv5smk5lclnlbz1bv")))) + (base32 "0yyc553xsb5n0rx7jp9p4wdbd7md07b3qrkf3ssyjavqqg908qg9")))) (arguments `(#:tests? #f ; no tests are available #:configure-flags (list -- cgit v1.2.3 From 597ab33d6ba19a8754da265e6b19ba6ad69d0144 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 9 Jun 2019 16:16:47 +0200 Subject: gnu: gnumeric: Update to 1.12.45. * gnu/packages/gnome.scm (gnumeric): Update to 1.12.45. --- gnu/packages/gnome.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 5ca4a0d517..d8af1408c2 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -2115,7 +2115,7 @@ Hints specification (EWMH).") (define-public gnumeric (package (name "gnumeric") - (version "1.12.44") + (version "1.12.45") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/gnumeric/" @@ -2123,7 +2123,7 @@ Hints specification (EWMH).") "gnumeric-" version ".tar.xz")) (sha256 (base32 - "0147962c6ybdsj57rz95nla0rls7g545wc2n7pz59zmzyd5pksk0")))) + "0c8dl1kvnj3g32qy3s92qpqpqfy0in59cx005gjvvzsflahav61h")))) (build-system glib-or-gtk-build-system) (arguments `(;; The gnumeric developers don't worry much about failing tests. -- cgit v1.2.3 From 310c89e330c31e0dfc94a9a0d36f4e717ab677bb Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 10 Jun 2019 00:25:20 +0200 Subject: gnu: mobile-broadband-provider-info: Update to 20190116. * gnu/packages/gnome.scm (mobile-broadband-provider-info): Update to 20190116. --- gnu/packages/gnome.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index d8af1408c2..28f47569b2 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -5467,7 +5467,7 @@ to virtual private networks (VPNs) via OpenVPN.") (define-public mobile-broadband-provider-info (package (name "mobile-broadband-provider-info") - (version "20170310") + (version "20190116") (source (origin (method url-fetch) (uri (string-append @@ -5476,10 +5476,10 @@ to virtual private networks (VPNs) via OpenVPN.") "mobile-broadband-provider-info-" version ".tar.xz")) (sha256 (base32 - "0fxm11x8k9hxjg8l5inaldfmmjnwkay3ibjv899jra03bv4h6kql")))) + "16y5lc7pfdvai9c8xwb825zc3v46039gghbip13fqslf5gw11fic")))) (build-system gnu-build-system) (arguments - `(#:tests? #f)) ; No tests + `(#:tests? #f)) ; no tests (home-page "https://wiki.gnome.org/Projects/NetworkManager") (synopsis "Database of broadband connection configuration") (description "Database of broadband connection configuration.") -- cgit v1.2.3 From c447eb4d1d7c222a68b1fd2397e01ff56a473e62 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 10 Jun 2019 01:25:17 +0200 Subject: gnu: Restore allegro-mesa-18.2.5-and-later.patch. Dropped in 49405aaf5c2c9cfc713c7efdccaf6d48d3c714a3, it's still in use by the (leaf) allegro-5.0 package. * gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch: Newish file. * gnu/local.mk (dist_patch_DATA): Re-add it. --- gnu/local.mk | 1 + .../patches/allegro-mesa-18.2.5-and-later.patch | 41 ++++++++++++++++++++++ 2 files changed, 42 insertions(+) create mode 100644 gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch (limited to 'gnu') diff --git a/gnu/local.mk b/gnu/local.mk index 907641ff3e..0522148385 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -662,6 +662,7 @@ dist_patch_DATA = \ %D%/packages/patches/aegisub-icu59-include-unistr.patch \ %D%/packages/patches/aegisub-boost68.patch \ %D%/packages/patches/agg-am_c_prototype.patch \ + %D%/packages/patches/allegro-mesa-18.2.5-and-later.patch \ %D%/packages/patches/amule-crypto-6.patch \ %D%/packages/patches/antiword-CVE-2014-8123.patch \ %D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch \ diff --git a/gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch b/gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch new file mode 100644 index 0000000000..fa273a5dfa --- /dev/null +++ b/gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch @@ -0,0 +1,41 @@ +Fixes compilation with Mesa >= 18.2.5. + +Taken from upstream: + +https://github.com/liballeg/allegro5/commit/a40d30e21802ecf5c9382cf34af9b01bd3781e47 + +diff --git a/include/allegro5/allegro_opengl.h b/include/allegro5/allegro_opengl.h +index 0f86a6768..652dd024e 100644 +--- a/include/allegro5/allegro_opengl.h ++++ b/include/allegro5/allegro_opengl.h +@@ -103,10 +103,14 @@ + + /* HACK: Prevent both Mesa and SGI's broken headers from screwing us */ + #define __glext_h_ ++#define __gl_glext_h_ + #define __glxext_h_ ++#define __glx_glxext_h_ + #include + #undef __glext_h_ ++#undef __gl_glext_h_ + #undef __glxext_h_ ++#undef __glx_glxext_h_ + + #endif /* ALLEGRO_MACOSX */ + +diff --git a/include/allegro5/opengl/GLext/glx_ext_defs.h b/include/allegro5/opengl/GLext/glx_ext_defs.h +index 49c502091..fba8aea5d 100644 +--- a/include/allegro5/opengl/GLext/glx_ext_defs.h ++++ b/include/allegro5/opengl/GLext/glx_ext_defs.h +@@ -1,7 +1,9 @@ + /* HACK: Prevent both Mesa and SGI's broken headers from screwing us */ + #define __glxext_h_ ++#define __glx_glxext_h_ + #include + #undef __glxext_h_ ++#undef __glx_glxext_h_ + + #ifndef GLX_VERSION_1_3 + #define _ALLEGRO_GLX_VERSION_1_3 +-- +2.20.0 -- cgit v1.2.3 From 9df786752e601d5074009bb460e985311904285c Mon Sep 17 00:00:00 2001 From: Jack Hill Date: Sun, 9 Jun 2019 22:02:15 -0400 Subject: gnu: Add emacs-recutils. * gnu/packages/databases.scm (emacs-recutils): New variable. Signed-off-by: Oleg Pykhalov --- gnu/packages/databases.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index ad4698f24c..8a33acac79 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -33,6 +33,7 @@ ;;; Copyright © 2018 Amirouche Boubekki ;;; Copyright © 2018 Joshua Sierles, Nextjournal ;;; Copyright © 2018 Maxim Cournoyer +;;; Copyright © 2019 Jack Hill ;;; ;;; This file is part of GNU Guix. ;;; @@ -108,6 +109,7 @@ #:use-module (guix download) #:use-module (guix bzr-download) #:use-module (guix git-download) + #:use-module (guix build-system emacs) #:use-module (guix build-system gnu) #:use-module (guix build-system go) #:use-module (guix build-system perl) @@ -965,6 +967,26 @@ types are supported, as is encryption.") (license license:gpl3+) (home-page "https://www.gnu.org/software/recutils/"))) +(define-public emacs-recutils + (package + (inherit recutils) + (name "emacs-recutils") + (build-system emacs-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'change-directory + (lambda _ + (chdir "etc") + #t))))) + (native-inputs '()) + (inputs '()) + (synopsis "Emacs mode for working with recutils database files") + (description "This package provides an Emacs major mode @code{rec-mode} +for working with GNU Recutils text-based, human-editable databases. It +supports editing, navigation, and querying of recutils database files +including field and record folding."))) + (define-public rocksdb (package (name "rocksdb") -- cgit v1.2.3 From 535a69e9e5aae2f59470caf900ece56f83ee6e36 Mon Sep 17 00:00:00 2001 From: Jack Hill Date: Sun, 9 Jun 2019 23:25:20 -0400 Subject: gnu: recutils: Remove emacs-minimal native input. * gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal. Signed-off-by: Oleg Pykhalov --- gnu/packages/databases.scm | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 8a33acac79..09a262d139 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -947,8 +947,7 @@ organized in a hash table or B+ tree.") (assoc-ref %build-inputs "bash:include") "/include/bash")))) - (native-inputs `(("emacs" ,emacs-minimal) - ("bc" ,bc) + (native-inputs `(("bc" ,bc) ("bash:include" ,bash "include") ("check" ,check) ("libuuid" ,util-linux) -- cgit v1.2.3 From ac302576006c95ab9adfe7a1f9bf11f7f3846e45 Mon Sep 17 00:00:00 2001 From: Eric Bavier Date: Thu, 30 May 2019 22:11:52 -0500 Subject: gnu: emacs-idris-mode: Use recent git checkout. * gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Use git-fetch. [version]: Include revision and commit. --- gnu/packages/emacs-xyz.scm | 45 ++++++++++++++++++++++++--------------------- 1 file changed, 24 insertions(+), 21 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 7db46e81c5..2eb705dedd 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -8534,29 +8534,32 @@ key. Optionally, a mouse pop-up can be added by binding (license license:gpl3+))) (define-public emacs-idris-mode - (package - (name "emacs-idris-mode") - (version "0.9.19") - (source - (origin - (method url-fetch) - (uri (string-append - "http://stable.melpa.org/packages/idris-mode-" - version ".tar")) - (sha256 - (base32 - "16hl2s22l3wc9drnwzw6hn7xrm49ml9lii0s6k218dgahdgsncmf")))) - (build-system emacs-build-system) - (propagated-inputs - `(("emacs-prop-menu" ,emacs-prop-menu))) - (home-page - "https://github.com/idris-hackers/idris-mode") - (synopsis "Major mode for editing Idris code") - (description - "This is an Emacs mode for editing Idris code. It requires the latest + (let ((commit "acc8835449475d7cd205aba213fdd3d41c38ba40") + (revision "0")) + (package + (name "emacs-idris-mode") + (version (git-version "0.9.19" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/idris-hackers/idris-mode.git") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 + "0n9xbknc68id0mf8hbfmawi8qpvrs47ix807sk9ffv2g3ik32kk6")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-prop-menu" ,emacs-prop-menu))) + (home-page + "https://github.com/idris-hackers/idris-mode") + (synopsis "Major mode for editing Idris code") + (description + "This is an Emacs mode for editing Idris code. It requires the latest version of Idris, and some features may rely on the latest Git version of Idris.") - (license license:gpl3+))) + (license license:gpl3+)))) (define-public emacs-browse-at-remote (package -- cgit v1.2.3 From ff5355f58edc04bc18fa42476f1d8dacc3fe34dc Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Mon, 10 Jun 2019 01:45:26 -0400 Subject: gnu: linux-libre@4.14: Update to 4.14.124. * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.124. (%linux-libre-4.14-hash): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 36b4cb6c91..caf55d3e70 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -480,8 +480,8 @@ It has been modified to remove all non-free binary blobs.") %linux-libre-4.15-hash)) -(define %linux-libre-4.14-version "4.14.123") -(define %linux-libre-4.14-hash "185kf576rwhsaq7jqrnmg8r5fh2nh4k8lifxaxwi3amshnwbj2qg") +(define %linux-libre-4.14-version "4.14.124") +(define %linux-libre-4.14-hash "0z9iaz1rcm9472rjvcihmq65ygyks07j6kbiqm989r9rb4dw6ghg") (define-public linux-libre-4.14 (make-linux-libre %linux-libre-4.14-version -- cgit v1.2.3 From 5d293300f8abe07bcb0de42bf5dbefef96d3c9fd Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Mon, 10 Jun 2019 01:48:01 -0400 Subject: gnu: linux-libre@4.15: Remove package. This release series is no longer supported upstream. * gnu/packages/linux.scm (%linux-libre-4.15-version) (%linux-libre-4.15-hash, linux-libre-4.15) (linux-libre-headers-4.15): Remove variables. --- gnu/packages/linux.scm | 14 -------------- 1 file changed, 14 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index caf55d3e70..176a25710d 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -466,20 +466,6 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre-headers %linux-libre-4.19-version %linux-libre-4.19-hash)) -(define %linux-libre-4.15-version "4.15.18") -(define %linux-libre-4.15-hash "0f0s4drx888ydlwjcm9qcxqian4850yiv2vamyw9bbjf83frwxyw") - -(define-public linux-libre-4.15 - (make-linux-libre %linux-libre-4.15-version - %linux-libre-4.15-hash - '("x86_64-linux" "i686-linux" "armhf-linux") - #:configuration-file kernel-config)) - -(define-public linux-libre-headers-4.15 - (make-linux-libre-headers %linux-libre-4.15-version - %linux-libre-4.15-hash)) - - (define %linux-libre-4.14-version "4.14.124") (define %linux-libre-4.14-hash "0z9iaz1rcm9472rjvcihmq65ygyks07j6kbiqm989r9rb4dw6ghg") -- cgit v1.2.3 From 84b3d9dd93bb9f899c8a7f29b8644171f8dab456 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Mon, 10 Jun 2019 01:51:08 -0400 Subject: gnu: linux-libre@4.19: Update to 4.19.49. * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49. (%linux-libre-4.19-hash): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 176a25710d..8f1fabc90c 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -448,8 +448,8 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre-headers %linux-libre-version %linux-libre-hash)) -(define %linux-libre-4.19-version "4.19.48") -(define %linux-libre-4.19-hash "04jwwzc9wbhx33i4bhm3vbs52vxlb8kjdmfjpfild94xbk8m2wy4") +(define %linux-libre-4.19-version "4.19.49") +(define %linux-libre-4.19-hash "0dxmm8190h0g5indj3sqfipkji10y3icr8xnf7bbz7086nkkrcvz") (define %linux-libre-4.19-patches (list %boot-logo-patch -- cgit v1.2.3 From 31775e400e05fb05fff0de4d3ffbf9549fe20994 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Mon, 10 Jun 2019 01:52:15 -0400 Subject: gnu: linux-libre: Update to 5.1.8. * gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8. (%linux-libre-hash): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 8f1fabc90c..17e36e6841 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -430,8 +430,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration." It has been modified to remove all non-free binary blobs.") (license license:gpl2))) -(define %linux-libre-version "5.1.7") -(define %linux-libre-hash "0hr4sbapdpgdkb6xg1f7bpc31242yiqdvy5sfpymsrzfslr8vwy1") +(define %linux-libre-version "5.1.8") +(define %linux-libre-hash "1vkirlz9vsvym8fdbvj308n3hj8f9j8n9m267x0dhlgbmig570j2") (define %linux-libre-5.1-patches (list %boot-logo-patch -- cgit v1.2.3 From 47b9614b3110307093382363c0ba70d31f32ef59 Mon Sep 17 00:00:00 2001 From: Oleg Pykhalov Date: Thu, 9 May 2019 15:13:26 +0300 Subject: services: Add 'nix-service-type'. * gnu/services/nix.scm: New file. * gnu/local.mk: Add this. * doc/guix.texi (Miscellaneous Services): Document this. --- doc/guix.texi | 41 +++++++++++++++++++ gnu/local.mk | 3 +- gnu/services/nix.scm | 112 +++++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 155 insertions(+), 1 deletion(-) create mode 100644 gnu/services/nix.scm (limited to 'gnu') diff --git a/doc/guix.texi b/doc/guix.texi index a9cd66ce87..83981b50d2 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -24197,6 +24197,47 @@ setuid-root (@pxref{Setuid Programs}) such that unprivileged users can invoke @command{singularity run} and similar commands. @end defvr +@cindex Nix +@subsubheading Nix service + +The @code{(gnu services nix)} module provides the following service. + +@defvr {Scheme Variable} nix-service-type + +This is the type of the service that runs build daemon of the +@url{https://nixos.org/nix/, Nix} package manager. Here is an example showing +how to use it: + +@example +(use-modules (gnu)) +(use-service-modules nix) +(use-package-modules package-management) + +(operating-system + ;; @dots{} + (packages (append (list nix) + %base-packages)) + + (services (append (list (service nix-service-type)) + %base-services))) +@end example + +After @command{guix system reconfigure} configure Nix for your user: + +@itemize +@item Add a Nix channel and update it. See @url{https://nixos.org/nix/manual/, +Nix Package Manager Guide}. + +@item Create a symlink to your profile and activate Nix profile: +@end itemize + +@example +$ ln -s "/nix/var/nix/profiles/per-user/$USER/profile" ~/.nix-profile +$ source /run/current-system/profile/etc/profile.d/nix.sh +@end example + +@end defvr + @node Setuid Programs @section Setuid Programs diff --git a/gnu/local.mk b/gnu/local.mk index 0522148385..34f00f9591 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -17,7 +17,7 @@ # Copyright © 2017 Mathieu Othacehe # Copyright © 2017, 2018 Gábor Boskovits # Copyright © 2018 Amirouche Boubekki -# Copyright © 2018 Oleg Pykhalov +# Copyright © 2018, 2019 Oleg Pykhalov # Copyright © 2018 Stefan Stefanović # Copyright © 2018 Maxim Cournoyer # @@ -526,6 +526,7 @@ GNU_SYSTEM_MODULES = \ %D%/services/messaging.scm \ %D%/services/monitoring.scm \ %D%/services/networking.scm \ + %D%/services/nix.scm \ %D%/services/nfs.scm \ %D%/services/security-token.scm \ %D%/services/shepherd.scm \ diff --git a/gnu/services/nix.scm b/gnu/services/nix.scm new file mode 100644 index 0000000000..72ecb7d089 --- /dev/null +++ b/gnu/services/nix.scm @@ -0,0 +1,112 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Oleg Pykhalov +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see . + +(define-module (gnu services nix) + #:use-module (gnu packages admin) + #:use-module (gnu packages package-management) + #:use-module (gnu services base) + #:use-module (gnu services configuration) + #:use-module (gnu services shepherd) + #:use-module (gnu services web) + #:use-module (gnu services) + #:use-module (gnu system shadow) + #:use-module (guix gexp) + #:use-module (guix packages) + #:use-module (guix records) + #:use-module (guix store) + #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26) + #:export (nix-service-type)) + +;;; Commentary: +;;; +;;; This module provides a service definition for the Nix daemon. +;;; +;;; Code: + + +;;; +;;; Accounts +;;; + +;; Copied from gnu/services/base.scm +(define* (nix-build-accounts count #:key + (group "nixbld") + (shadow shadow)) + "Return a list of COUNT user accounts for Nix build users with the given +GID." + (unfold (cut > <> count) + (lambda (n) + (user-account + (name (format #f "nixbld~2,'0d" n)) + (system? #t) + (group group) + (supplementary-groups (list group "kvm")) + (comment (format #f "Nix Build User ~2d" n)) + (home-directory "/var/empty") + (shell (file-append shadow "/sbin/nologin")))) + 1+ + 1)) +(define (nix-accounts _) + "Return the user accounts and user groups." + (cons (user-group + (name "nixbld") + (system? #t) + + ;; Use a fixed GID so that we can create the store with the right + ;; owner. + (id 40000)) + (nix-build-accounts 10 #:group "nixbld"))) + +(define (nix-activation _) + "Return the activation gexp." + (with-imported-modules '((guix build utils)) + #~(begin + (use-modules (guix build utils)) + (for-each (cut mkdir-p <>) '("/nix/store" "/nix/var/log" + "/nix/var/nix/gcroots/per-user" + "/nix/var/nix/profiles/per-user")) + (chown "/nix/store" + (passwd:uid (getpw "root")) (group:gid (getpw "nixbld01"))) + (chmod "/nix/store" #o775) + (for-each (cut chmod <> #o777) '("/nix/var/nix/profiles" + "/nix/var/nix/profiles/per-user"))))) + +(define (nix-shepherd-service _) + "Return a for Nix." + (list + (shepherd-service + (provision '(nix-daemon)) + (documentation "Run nix-daemon.") + (requirement '()) + (start #~(make-forkexec-constructor + (list (string-append #$nix "/bin/nix-daemon")))) + (respawn? #f) + (stop #~(make-kill-destructor))))) + +(define nix-service-type + (service-type + (name 'nix) + (extensions + (list (service-extension shepherd-root-service-type nix-shepherd-service) + (service-extension account-service-type nix-accounts) + (service-extension activation-service-type nix-activation))) + (default-value '()) + (description "Run the Nix daemon."))) + +;;; nix.scm ends here -- cgit v1.2.3 From b09793172f59403779b01796be16b385b19b3345 Mon Sep 17 00:00:00 2001 From: Christopher Baines Date: Sat, 18 May 2019 21:58:40 +0100 Subject: services: guix-publish: Log to a file. This makes it easier to read the output, as it's recorded in a file. * gnu/services/base.scm (guix-publish-shepherd-service): Add #:log-file to make-forkexec-constructor. --- gnu/services/base.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'gnu') diff --git a/gnu/services/base.scm b/gnu/services/base.scm index c88a6ddec6..5e46795a5a 100644 --- a/gnu/services/base.scm +++ b/gnu/services/base.scm @@ -1824,7 +1824,8 @@ raise a deprecation warning if the 'compression-level' field was used." #:environment-variables (list (string-append "GUIX_LOCPATH=" #$glibc-utf8-locales "/lib/locale") - "LC_ALL=en_US.utf8"))) + "LC_ALL=en_US.utf8") + #:log-file "/var/log/guix-publish.log")) (stop #~(make-kill-destructor)))))) (define %guix-publish-accounts -- cgit v1.2.3 From 4252dace19945f56192477e8cb07973c20a526ba Mon Sep 17 00:00:00 2001 From: Christopher Baines Date: Fri, 31 May 2019 18:25:48 +0100 Subject: services: guix-publish: Configure log rotation. * gnu/services/base.scm (%guix-publish-log-rotations): New variable. (guix-publish-service-type): Extend the rottlog-service-type. --- gnu/services/base.scm | 7 +++++++ 1 file changed, 7 insertions(+) (limited to 'gnu') diff --git a/gnu/services/base.scm b/gnu/services/base.scm index 5e46795a5a..3c1827fb70 100644 --- a/gnu/services/base.scm +++ b/gnu/services/base.scm @@ -28,6 +28,7 @@ #:use-module (guix store) #:use-module (guix deprecation) #:use-module (gnu services) + #:use-module (gnu services admin) #:use-module (gnu services shepherd) #:use-module (gnu system pam) #:use-module (gnu system shadow) ; 'user-account', etc. @@ -1838,6 +1839,10 @@ raise a deprecation warning if the 'compression-level' field was used." (home-directory "/var/empty") (shell (file-append shadow "/sbin/nologin"))))) +(define %guix-publish-log-rotations + (list (log-rotation + (files (list "/var/log/guix-publish.log"))))) + (define (guix-publish-activation config) (let ((cache (guix-publish-configuration-cache config))) (if cache @@ -1859,6 +1864,8 @@ raise a deprecation warning if the 'compression-level' field was used." guix-publish-shepherd-service) (service-extension account-service-type (const %guix-publish-accounts)) + (service-extension rottlog-service-type + (const %guix-publish-log-rotations)) (service-extension activation-service-type guix-publish-activation))) (default-value (guix-publish-configuration)) -- cgit v1.2.3 From a9fac3f4d3e8fb579314afc6d22add1394f2fe7f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 10 Jun 2019 10:58:30 +0200 Subject: gnu: Add r-ropls. * gnu/packages/bioconductor.scm (r-ropls): New variable. --- gnu/packages/bioconductor.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c1bbcdc2c0..f8bcb8eb4c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4606,3 +4606,39 @@ expression data to predict switches in regulatory activity between two conditions. A Bayesian network is used to model the regulatory structure and Markov-Chain-Monte-Carlo is applied to sample the activity states.") (license license:gpl2+))) + +(define-public r-ropls + (package + (name "r-ropls") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ropls" version)) + (sha256 + (base32 + "099nv9dgmw3avkxv7cd27r16yj56svjlp5q4i389yp1n0r5zhyl2")))) + (build-system r-build-system) + (propagated-inputs `(("r-biobase" ,r-biobase))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes + (home-page "https://dx.doi.org/10.1021/acs.jproteome.5b00354") + (synopsis "Multivariate analysis and feature selection of omics data") + (description + "Latent variable modeling with @dfn{Principal Component Analysis} (PCA) +and @dfn{Partial Least Squares} (PLS) are powerful methods for visualization, +regression, classification, and feature selection of omics data where the +number of variables exceeds the number of samples and with multicollinearity +among variables. @dfn{Orthogonal Partial Least Squares} (OPLS) enables to +separately model the variation correlated (predictive) to the factor of +interest and the uncorrelated (orthogonal) variation. While performing +similarly to PLS, OPLS facilitates interpretation. + +This package provides imlementations of PCA, PLS, and OPLS for multivariate +analysis and feature selection of omics data. In addition to scores, loadings +and weights plots, the package provides metrics and graphics to determine the +optimal number of components (e.g. with the R2 and Q2 coefficients), check the +validity of the model by permutation testing, detect outliers, and perform +feature selection (e.g. with Variable Importance in Projection or regression +coefficients).") + (license license:cecill))) -- cgit v1.2.3 From 075a90946b93eefeb30996978dd293147aaeff94 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 10 Jun 2019 10:58:39 +0200 Subject: gnu: Add r-biosigner. * gnu/packages/bioconductor.scm (r-biosigner): New variable. --- gnu/packages/bioconductor.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f8bcb8eb4c..ff159638b3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4642,3 +4642,38 @@ validity of the model by permutation testing, detect outliers, and perform feature selection (e.g. with Variable Importance in Projection or regression coefficients).") (license license:cecill))) + +(define-public r-biosigner + (package + (name "r-biosigner") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "biosigner" version)) + (sha256 + (base32 + "1643iya40v6whb7lw7y34w5sanbasvj4yhvcygbip667yhphyv5b")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-e1071" ,r-e1071) + ("r-randomforest" ,r-randomforest) + ("r-ropls" ,r-ropls))) + (native-inputs + `(("r-knitr" ,r-knitr) + ("r-rmarkdown" ,r-rmarkdown) + ("pandoc" ,ghc-pandoc) + ("pandoc-citeproc" ,ghc-pandoc-citeproc))) ; all for vignettes + (home-page "https://bioconductor.org/packages/biosigner/") + (synopsis "Signature discovery from omics data") + (description + "Feature selection is critical in omics data analysis to extract +restricted and meaningful molecular signatures from complex and high-dimension +data, and to build robust classifiers. This package implements a method to +assess the relevance of the variables for the prediction performances of the +classifier. The approach can be run in parallel with the PLS-DA, Random +Forest, and SVM binary classifiers. The signatures and the corresponding +'restricted' models are returned, enabling future predictions on new +datasets.") + (license license:cecill))) -- cgit v1.2.3 From 226a3605d6cabeb71247a732a99d625c9cfafa74 Mon Sep 17 00:00:00 2001 From: Diego Nicola Barbato Date: Fri, 7 Jun 2019 23:58:05 +0200 Subject: artwork: Update snapshot to 2f2fe74. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/artwork.scm (%artwork-repository): Update to 2f2fe74. Signed-off-by: Ludovic Courtès --- gnu/artwork.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/artwork.scm b/gnu/artwork.scm index b95f5cbf8a..f404467dd7 100644 --- a/gnu/artwork.scm +++ b/gnu/artwork.scm @@ -29,7 +29,7 @@ ;;; Code: (define %artwork-repository - (let ((commit "b975164c19c9c0f5d91e5731ec1683e7510c1326")) + (let ((commit "2f2fe74c1078be605a6a93c2193fd6c715cebbb0")) (origin (method git-fetch) (uri (git-reference @@ -39,6 +39,6 @@ "-checkout")) (sha256 (base32 - "1fad7az077q9ds3jhp00jfsr8rfw4ws042wmnai52k7jv4kbxwyf"))))) + "0c8r0phvm3wgf914n2kw1461cwdjl2zbzqvzq9x7d9pwkgv7xmq7"))))) ;;; artwork.scm ends here -- cgit v1.2.3 From 2f9f792a1e4854bd17a26366a84911656607b4a3 Mon Sep 17 00:00:00 2001 From: Diego Nicola Barbato Date: Sat, 8 Jun 2019 09:54:20 +0200 Subject: services: slim: Update SLiM theme to 1.x. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/services/xorg.scm (%default-slim-theme-name): Change to "1.x". Signed-off-by: Ludovic Courtès --- gnu/services/xorg.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu') diff --git a/gnu/services/xorg.scm b/gnu/services/xorg.scm index 0a38b4013c..06d72b5f60 100644 --- a/gnu/services/xorg.scm +++ b/gnu/services/xorg.scm @@ -465,7 +465,7 @@ desktop session from the system or user profile will be used." (define %default-slim-theme-name ;; This must be the name of the sub-directory in %DEFAULT-SLIM-THEME that ;; contains the actual theme files. - "0.x") + "1.x") (define-record-type* slim-configuration make-slim-configuration -- cgit v1.2.3 From 7d5113e50ed2c5e4f02038da35ac7fa00fda178c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 10 Jun 2019 23:49:11 +0200 Subject: gnu: slurp: Update to 1.2.0. * gnu/packages/image.scm (slurp): Update to 1.2.0. --- gnu/packages/image.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index e3956394cc..d7c00ff4b3 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -1626,7 +1626,7 @@ identical visual appearance.") (define-public slurp (package (name "slurp") - (version "1.0.1") + (version "1.2.0") (source (origin (method git-fetch) @@ -1635,7 +1635,7 @@ identical visual appearance.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "072lkwhpvr753wfqzmd994bnhbrgfavxcgqcyml7abab28sdhs1y")))) + (base32 "0580m6kaiilgsrcj608r837r37sl6a25y7w21p7d6ij20fs3gvg1")))) (build-system meson-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("cairo" ,cairo) -- cgit v1.2.3 From 501d4b335acaa8341b0757a5117aca609ce830fe Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 10 Jun 2019 23:52:47 +0200 Subject: gnu: grim: Update to 1.2.0. * gnu/packages/image.scm (grim): Update to 1.2.0. --- gnu/packages/image.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index d7c00ff4b3..f9709e2b19 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -1600,7 +1600,7 @@ identical visual appearance.") (define-public grim (package (name "grim") - (version "1.1") + (version "1.2.0") (source (origin (method git-fetch) @@ -1609,7 +1609,7 @@ identical visual appearance.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1bcvkggqszcwy6hg8g4mch3yr25ic0baafbd90af5s5mrhrjxxxz")))) + (base32 "0brljl4zfbn5mh9hkfrfkvd27c5y9vdkgap9r1hrfy9r1x20sskn")))) (build-system meson-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("cairo" ,cairo) -- cgit v1.2.3 From b6c31f0e50fe3ca7e3fa3cd4d633f743f1c9136c Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Tue, 11 Jun 2019 08:20:49 +0200 Subject: gnu: kitty: Update to 0.14.2. * gnu/packages/terminals.scm (kitty): Update to 0.14.2. --- gnu/packages/terminals.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 0ef9b0079d..f742e86a6b 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -924,7 +924,7 @@ tmux.") (define-public kitty (package (name "kitty") - (version "0.14.1") + (version "0.14.2") (home-page "https://sw.kovidgoyal.net/kitty/") (source (origin @@ -935,7 +935,7 @@ tmux.") (file-name (git-file-name name version)) (sha256 (base32 - "0nm8l8ki0csdapf5mj3vg605ki5hjsx7h7i3m01x1a4vjzjmk8bv")) + "15iv3k7iryf10n8n67d37x24pzcarq97a3dr42lbld00k1lx19az")) (modules '((guix build utils))) (snippet '(begin -- cgit v1.2.3 From 0debb9ac7eaab595a8b82b34e3eb13f5c2ef3c91 Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Tue, 11 Jun 2019 08:21:05 +0200 Subject: gnu: faudio: Update to 19.06.07. * gnu/packages/audio.scm (faudio): Update to 19.06.07. --- gnu/packages/audio.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index f3f592c58a..9defc59b93 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -3701,7 +3701,7 @@ library.") (define-public faudio (package (name "faudio") - (version "19.06") + (version "19.06.07") (source (origin (method git-fetch) @@ -3710,7 +3710,7 @@ library.") (commit version))) (file-name (string-append name "-" version "-checkout")) (sha256 - (base32 "1azjf972hik1cizsblbvfp38xz7dx368pbpw3pd6z1xk9mnrhi6s")))) + (base32 "1w37qp279lgpyvslwz3wlb4fp0i68ncd411rqdlk5s71b1zz466n")))) (arguments '(#:tests? #f ; No tests. #:configure-flags '("-DFFMPEG=ON"))) -- cgit v1.2.3 From 80166beca231b02e302b5eb9400c8b8e2b84c94a Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Tue, 11 Jun 2019 08:24:49 +0200 Subject: gnu: wine-staging: Update to 4.10. * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.10. * gnu/packages/wine.scm (wine-staging): Update to 4.10. --- gnu/packages/wine.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm index eb8ac81930..63916d1cc3 100644 --- a/gnu/packages/wine.scm +++ b/gnu/packages/wine.scm @@ -310,7 +310,7 @@ integrate Windows applications into your desktop.") (define-public wine-staging-patchset-data (package (name "wine-staging-patchset-data") - (version "4.9") + (version "4.10") (source (origin (method git-fetch) @@ -320,7 +320,7 @@ integrate Windows applications into your desktop.") (file-name (git-file-name name version)) (sha256 (base32 - "17v66rsxvm3grglidxxzllw4msfrgwg35hmzanvrf8x8jfzjlvv2")))) + "0kl5718c4xk8d1va1jb5jaa2n0vw3l0hi6bpc7siaww1fp64hy98")))) (build-system trivial-build-system) (native-inputs `(("bash" ,bash) @@ -366,7 +366,7 @@ integrate Windows applications into your desktop.") (file-name (string-append name "-" version ".tar.xz")) (sha256 (base32 - "16vrzhhk0x862mfhninx5515s76j2kbjgmz7gzdigjzkzwi8x14i")))) + "041d3km85iqbshspy9av1fxjwq18xldrb18j04xl2fmpv1hq3pas")))) (inputs `(("autoconf" ,autoconf) ; for autoreconf ("faudio" ,faudio) ("ffmpeg" ,ffmpeg) -- cgit v1.2.3 From 6c98d9c7fc71edb72f6a9cdf4555cb3a20c40c49 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Mon, 10 Jun 2019 15:20:24 +0200 Subject: gnu: offlineimap: Update to 7.2.4. * gnu/packages/mail.scm (offlineimap): Update to 7.2.4. --- gnu/packages/mail.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 35a2c3048d..7f9dc8e13f 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -581,7 +581,7 @@ and corrections. It is based on a Bayesian filter.") (define-public offlineimap (package (name "offlineimap") - (version "7.2.3") + (version "7.2.4") (source (origin (method git-fetch) (uri (git-reference @@ -590,7 +590,7 @@ and corrections. It is based on a Bayesian filter.") (file-name (git-file-name name version)) (sha256 (base32 - "18sdnhjldn8zs03bgqy1qa3ikmlfvyxcvwp3nbnv1a74biccqbpa")))) + "0h5q5nk2p2vx86w6rrbs7v70h81dpqqr68x6l3klzl3m0yj9agb1")))) (build-system python-build-system) (native-inputs `(("asciidoc" ,asciidoc))) -- cgit v1.2.3 From bf3005346e6538aba6d077c887f688779b94b274 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Mon, 10 Jun 2019 15:32:34 +0200 Subject: gnu: tbb: Update to 2019_U8. * gnu/packages/tbb.scm (tbb): Update to 2019_U8. --- gnu/packages/tbb.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/tbb.scm b/gnu/packages/tbb.scm index b8f324274a..5e427ffe63 100644 --- a/gnu/packages/tbb.scm +++ b/gnu/packages/tbb.scm @@ -28,7 +28,7 @@ (define-public tbb (package (name "tbb") - (version "2019_U6") + (version "2019_U8") (source (origin (method git-fetch) (uri (git-reference @@ -37,7 +37,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "1zbf06l659vq6s5wp3ln96ycwcd42caffan5vilqvqyxqvjljyic")) + "0z0kh1a5g28gckcxlv3x7qqskh5fsl8knf2ypbbvk7z9ln9k3wfq")) (modules '((guix build utils))) (snippet '(begin -- cgit v1.2.3