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authorRicardo Wurmus <rekado@elephly.net>2022-08-02 14:35:42 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-08-02 14:37:38 +0200
commit03858a79084515eb808bb3275cb2078a4dde3909 (patch)
tree5e9be5f52ff3fabdd3f81661e10fe6838b377e8a
parentc69c2c1c4d127aed8537eab0cc787062b988be10 (diff)
gnu: Add python-scanorama.
* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 17e33c34c1..00238531db 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12475,6 +12475,35 @@ cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
matrices.")
(license license:expat)))
+(define-public python-scanorama
+ (package
+ (name "python-scanorama")
+ (version "1.7.2")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "scanorama" version))
+ (sha256
+ (base32
+ "0il7bf4c7vli2dm2jx7dskh3ymgv8nmk0y90jzgfrnqjzh250x5w"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ (list python-annoy
+ python-fbpca
+ python-geosketch
+ python-intervaltree
+ python-matplotlib
+ python-numpy
+ python-scikit-learn
+ python-scipy))
+ (home-page "https://github.com/brianhie/scanorama")
+ (synopsis "Panoramic stitching of heterogeneous single cell transcriptomic data")
+ (description
+ "Scanorama enables batch-correction and integration of heterogeneous
+scRNA-seq datasets, which is described in the paper \"Efficient integration of
+heterogeneous single-cell transcriptomes using Scanorama\" by Brian Hie, Bryan
+Bryson, and Bonnie Berger.")
+ (license license:expat)))
+
(define-public r-pore
(package
(name "r-pore")