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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-04-13 14:21:38 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-14 11:59:15 +0200
commit08df30f232afc1fc1ae7fb3c9889b5ad96bc5dea (patch)
treeb775ec7c82c591c748de0902a2f250101f13b046
parent50046194a21e9f8697bdd30d9821b4dd595fe632 (diff)
gnu: Add r-acgh.
* gnu/packages/bioconductor.scm (r-acgh): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r--gnu/packages/bioconductor.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bae472c8ac..d3e16cd859 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11637,6 +11637,30 @@ segments fit (the relative error) to integer copy numbers for each percentage
of @dfn{tumor cells} (cells with divergent segments).")
(license license:gpl2)))
+(define-public r-acgh
+ (package
+ (name "r-acgh")
+ (version "1.72.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "aCGH" version))
+ (sha256
+ (base32
+ "1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"))))
+ (properties `((upstream-name . "aCGH")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-cluster r-multtest r-survival))
+ (home-page "https://bioconductor.org/packages/aCGH")
+ (synopsis
+ "Classes and functions for array comparative genomic hybridization data")
+ (description
+ "This package provides functions for reading
+@dfn{array comparative genomic hybridization} (aCGH) data from image analysis
+output files and clone information files, creation of @code{aCGH} objects for
+storing these data. Basic methods are accessing/replacing, subsetting,
+printing and plotting @code{aCGH} objects.")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs